Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 2.0e-258 895.2 446 100.0
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 2.0e-197 692.6 448 78.3
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 3.8e-196 688.3 463 78.6
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 3.9e-193 678.3 462 78.1
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 6.7e-193 677.6 444 78.6
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 2.2e-191 672.5 447 77.4
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 2.8e-191 672.2 454 76.2
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 6.3e-191 671.0 451 76.7
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.8e-190 669.5 457 76.4
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 1.2e-189 666.8 459 75.6
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 2.0e-189 666.0 459 75.2
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 2.6e-189 665.6 451 76.5
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 7.7e-189 664.1 451 76.5
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 1.7e-188 662.9 456 75.4
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 2.2e-188 662.5 455 74.9
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 2.2e-188 662.5 453 75.7
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 5.0e-188 661.4 457 75.7
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 1.9e-187 659.4 455 74.1
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 5.5e-187 657.9 449 76.4
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 7.2e-187 657.5 474 73.2
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 7.2e-187 657.5 455 74.3
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 1.2e-186 656.8 454 73.8
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 1.6e-186 656.4 451 75.2
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 2.1e-186 656.0 448 75.0
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 2.1e-186 656.0 452 74.1
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 3.6e-186 655.2 453 74.0
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 3.6e-186 655.2 436 76.8
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 1.4e-185 653.3 462 74.5
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 1.4e-185 653.3 454 73.8
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.8e-185 652.9 457 75.3
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 2.3e-185 652.5 406 81.3
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 3.0e-185 652.1 406 81.0
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 5.2e-185 651.4 449 73.9
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 5.2e-185 651.4 457 73.1
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 6.7e-185 651.0 440 76.6
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 8.8e-185 650.6 453 74.2
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 1.1e-184 650.2 453 73.3
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 2.0e-184 649.4 449 73.9
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 2.6e-184 649.0 471 73.0
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 4.4e-184 648.3 439 75.6
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 9.7e-184 647.1 452 73.2
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 1.7e-183 646.4 455 74.5
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 2.2e-183 646.0 451 74.5
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 2.8e-183 645.6 454 73.6
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 2.8e-183 645.6 459 73.9
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 3.7e-183 645.2 455 74.5
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 4.8e-183 644.8 456 73.2
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 4.8e-183 644.8 452 73.5
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 4.8e-183 644.8 452 73.5
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 6.3e-183 644.4 470 72.6
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 8.2e-183 644.0 455 74.3
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.1e-182 643.7 455 74.3
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.4e-182 643.3 403 80.1
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 3.1e-182 642.1 450 72.4
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 4.1e-182 641.7 452 72.8
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 5.3e-182 641.3 459 72.1
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 1.6e-181 639.8 459 72.8
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 2.0e-181 639.4 447 74.7
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 4.5e-181 638.3 455 73.8
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 7.7e-181 637.5 457 73.5
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.7e-180 636.3 450 73.1
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 2.2e-180 636.0 449 72.4
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 2.9e-180 635.6 447 73.8
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 3.8e-180 635.2 455 72.1
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 3.8e-180 635.2 449 73.7
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 5.0e-180 634.8 447 73.8
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 2.5e-179 632.5 458 72.1
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 4.2e-179 631.7 448 72.8
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 5.5e-179 631.3 449 72.6
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 1.6e-178 629.8 440 73.2
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 2.7e-178 629.0 463 71.9
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 3.6e-178 628.6 403 78.2
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 3.6e-178 628.6 484 70.0
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 6.1e-178 627.9 411 77.9
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 8.8e-177 624.0 521 65.8
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 8.8e-177 624.0 402 76.4
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 1.2e-176 623.6 443 72.5
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 2.0e-176 622.9 455 71.6
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 4.4e-176 621.7 411 75.9
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 2.2e-175 619.4 446 72.4
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 4.8e-175 618.2 444 71.6
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 4.8e-175 618.2 423 75.9
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 8.2e-175 617.5 429 73.2
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 8.2e-175 617.5 455 70.5
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 1.1e-174 617.1 444 71.8
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 1.1e-174 617.1 443 72.2
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 1.4e-174 616.7 424 73.3
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 2.0e-173 612.8 392 78.1
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 3.5e-173 612.1 429 72.7
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 1.0e-172 610.5 420 72.6
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 1.7e-172 609.8 388 78.1
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 3.8e-172 608.6 446 70.2
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 2.5e-171 605.9 444 70.7
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 2.5e-171 605.9 400 74.8
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 1.2e-170 603.6 405 75.6
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 1.2e-170 603.6 405 75.6
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 1.6e-170 603.2 409 74.1
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 6.1e-170 601.3 392 77.0
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 8.0e-170 600.9 386 77.2
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 1.0e-169 600.5 386 77.5
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 1.4e-169 600.1 441 69.6
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 1.4e-169 600.1 365 84.1
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 1.8e-169 599.7 451 70.3
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 3.0e-169 599.0 455 67.7
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 4.0e-169 598.6 444 69.4
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 5.2e-169 598.2 414 73.2
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 3.4e-168 595.5 403 73.9
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 1.7e-167 593.2 453 69.5
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.1e-163 580.5 448 68.5
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 1.5e-163 580.1 405 74.1
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 1.8e-158 563.1 443 66.8
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 2.1e-154 549.7 370 75.1
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 7.0e-150 534.6 417 64.7
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 4.3e-147 525.4 431 61.9
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 3.1e-145 519.2 389 66.1
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 1.2e-141 507.3 524 56.1
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 2.8e-138 496.1 449 60.6
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 8.1e-138 494.6 372 70.2
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 9.9e-136 487.6 451 61.0
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 6.4e-135 485.0 385 63.1
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 6.6e-132 474.9 335 72.8
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 9.2e-126 454.5 377 59.4
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 2.3e-116 423.3 337 66.2
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 3.0e-116 422.9 390 55.1
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 3.3e-115 419.5 282 76.2
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 9.6e-115 417.9 373 62.2
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.5e-107 394.0 279 73.1
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 7.9e-101 371.7 291 63.9
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 4.3e-99 365.9 409 52.3
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 8.2e-98 361.7 289 66.1
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 7.2e-86 322.0 445 45.8
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 6.9e-81 305.4 170 89.4
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 2.2e-79 300.4 205 73.2
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 3.6e-77 293.1 206 71.8
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 8.8e-76 288.5 191 78.0
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 7.4e-67 258.8 208 67.3
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 7.4e-67 258.8 208 67.3
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 6.1e-61 239.2 159 76.1
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-54 216.9 161 64.6
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 4.9e-50 203.0 151 65.6
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 9.1e-49 198.7 128 73.4
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 3.4e-43 180.3 203 54.2
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 5.2e-36 156.4 100 75.0
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 7.5e-35 152.5 93 76.3
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 6.4e-34 149.4 149 57.7
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.2e-32 145.2 136 59.6
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 2.7e-32 144.1 397 30.0
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 2.3e-31 141.0 77 88.3
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 2.6e-27 127.5 158 48.1
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 3.2e-25 120.6 184 40.8
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 7.8e-24 115.9 195 39.0
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 1.8e-20 104.8 67 77.6
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 8.6e-15 85.9 50 82.0
PRCOL_00006728 Prasinoderma coloniale HOM05D004678 ORTHO05D333305 2.6e-11 74.3 393 25.7
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 2.4e-09 67.8 39 71.8
Lsat_1_v5_gn_7_11140 Lactuca sativa HOM05D002771 ORTHO05D003078 4.6e-08 63.5 256 25.8
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 4.6e-08 63.5 58 56.9
Mapoly0162s0009 Marchantia polymorpha HOM05D002771 ORTHO05D003078 6.0e-08 63.2 284 23.2
CBR_g36553 Chara braunii HOM05D003605 ORTHO05D003078 7.8e-08 62.8 213 27.7
CBR_g81019 Chara braunii HOM05D003605 ORTHO05D004292 1.3e-07 62.0 285 26.0
Pp3c20_8270 Physcomitrium patens HOM05D004697 ORTHO05D006015 3.9e-07 60.5 319 25.4
Pp3s32_480 Physcomitrium patens HOM05D003605 ORTHO05D309393 5.1e-07 60.1 212 25.5
Migut.D01039 Erythranthe guttata HOM05D004697 ORTHO05D006015 1.5e-06 58.5 261 23.8
DCAR_012361 Daucus carota HOM05D002771 ORTHO05D003078 2.5e-06 57.8 257 22.2
FAN26G2714 Fragaria x ananassa HOM05D003605 ORTHO05D004292 2.5e-06 57.8 303 25.1
Mapoly0192s0009 Marchantia polymorpha HOM05D004697 ORTHO05D006015 2.5e-06 57.8 317 24.0
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 4.3e-06 57.0 316 24.7
PGR102G0607 Punica granatum HOM05D004697 ORTHO05D006015 4.3e-06 57.0 261 25.3
DCAR_016232 Daucus carota HOM05D004697 ORTHO05D006015 5.6e-06 56.6 229 24.5
Lalb_Chr25g0279581 Lupinus albus HOM05D004697 ORTHO05D006015 5.6e-06 56.6 314 23.2
RcHm_v2.0_Chr2g0115381 Rosa chinensis HOM05D003605 ORTHO05D004292 5.6e-06 56.6 290 25.5
FvH4_1g21500 Fragaria vesca HOM05D003605 ORTHO05D004292 7.3e-06 56.2 290 25.5
FAN19G1223 Fragaria x ananassa HOM05D003605 ORTHO05D004292 7.3e-06 56.2 290 25.5
Lsat_1_v5_gn_4_104321 Lactuca sativa HOM05D004697 ORTHO05D006015 7.3e-06 56.2 236 25.0


User provided reference genes

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