Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A851T65 Lonicera japonica HOM05D007059 ORTHO05D009155 1.3e-140 503.1 248 100.0
CSS0038027 Camellia sinensis var. sinensis HOM05D007059 ORTHO05D009155 4.1e-83 312.0 245 69.0
Rhsim04G0168700 Rhododendron simsii HOM05D007059 ORTHO05D009155 1.3e-81 307.0 247 68.4
vmacro08590 Vaccinium macrocarpon HOM05D007059 ORTHO05D009155 8.0e-79 297.7 245 65.7
Actinidia38411 Actinidia chinensis HOM05D007059 ORTHO05D009155 2.0e-77 293.1 243 65.4
TAR629G1440 Trochodendron aralioides HOM05D007059 ORTHO05D009155 2.2e-76 289.7 246 65.4
ECA234G4546 Erigeron canadensis HOM05D007059 ORTHO05D009155 4.1e-75 285.4 244 64.3
Prupe.1G344600 Prunus persica HOM05D007059 ORTHO05D009155 4.1e-75 285.4 245 64.5
Thecc.02G295400 Theobroma cacao HOM05D007059 ORTHO05D009155 1.2e-74 283.9 252 63.1
Atru.chr11.1222 Acer truncatum HOM05D007059 ORTHO05D009155 4.6e-74 282.0 245 63.7
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 7.8e-74 281.2 238 65.5
Nn4g24915 Nelumbo nucifera HOM05D007059 ORTHO05D009155 1.0e-73 280.8 247 64.8
Sabra10G0129500 Salix brachista HOM05D007059 ORTHO05D009155 3.9e-73 278.9 254 64.2
Potri.010G169700 Populus trichocarpa HOM05D007059 ORTHO05D009155 6.6e-73 278.1 254 64.2
CAN.G624.23 Capsicum annuum HOM05D007059 ORTHO05D009155 2.5e-72 276.2 247 63.2
Eucgr.G02016 Eucalyptus grandis HOM05D007059 ORTHO05D009155 2.5e-72 276.2 248 61.7
Nitab4.5_0002113g0150 Nicotiana tabacum HOM05D007059 ORTHO05D009155 2.5e-72 276.2 247 62.3
Nitab4.5_0007261g0020 Nicotiana tabacum HOM05D007059 ORTHO05D009155 3.3e-72 275.8 247 62.3
CiPaw.05G167400 Carya illinoinensis HOM05D007059 ORTHO05D009155 4.3e-72 275.4 237 64.6
Peaxi162Scf01172g00004 Petunia axillaris HOM05D007059 ORTHO05D009155 5.6e-72 275.0 247 62.8
PSO782G1004 Papaver somniferum HOM05D007059 ORTHO05D009155 1.2e-71 273.9 247 62.3
GSVIVG01010187001 Vitis vinifera HOM05D007059 ORTHO05D009155 1.6e-71 273.5 236 64.0
PSO063G1277 Papaver somniferum HOM05D007059 ORTHO05D009155 2.1e-71 273.1 247 62.3
Sopen04g004490 Solanum pennellii HOM05D007059 ORTHO05D009155 2.8e-71 272.7 252 61.5
PGSC0003DMG400032539 Solanum tuberosum HOM05D007059 ORTHO05D009155 8.1e-71 271.2 252 61.5
MD16G1006000 Malus domestica HOM05D007059 ORTHO05D009155 1.1e-70 270.8 246 62.2
Solyc04g009370.4 Solanum lycopersicum HOM05D007059 ORTHO05D009155 1.4e-70 270.4 252 61.1
COL.COLO4_16620 Corchorus olitorius HOM05D007059 ORTHO05D009155 6.8e-70 268.1 250 62.4
Ciclev10033522m.g Citrus clementina HOM05D007059 ORTHO05D009155 2.0e-69 266.5 246 63.0
FAN12G0665 Fragaria x ananassa HOM05D007059 ORTHO05D009155 2.0e-69 266.5 249 61.4
FvH4_4g36660 Fragaria vesca HOM05D007059 ORTHO05D009155 5.8e-69 265.0 247 61.5
RcHm_v2.0_Chr4g0446371 Rosa chinensis HOM05D007059 ORTHO05D009155 5.8e-69 265.0 245 62.9
FAN07G2854 Fragaria x ananassa HOM05D007059 ORTHO05D009155 7.5e-69 264.6 249 61.4
Glyma.11G104100 Glycine max HOM05D007059 ORTHO05D009155 7.5e-69 264.6 232 61.2
HanXRQChr01g0028541 Helianthus annuus HOM05D007059 ORTHO05D009155 1.3e-68 263.8 248 59.7
Psat7g174240 Pisum sativum HOM05D007059 ORTHO05D009155 1.3e-68 263.8 237 61.2
Lsat_1_v5_gn_4_26421 Lactuca sativa HOM05D007059 ORTHO05D009155 1.7e-68 263.5 247 59.1
MBI06_g22349_MAGBIO Magnolia biondii HOM05D007059 ORTHO05D009155 1.7e-68 263.5 245 58.8
Phvul.011G032300 Phaseolus vulgaris HOM05D007059 ORTHO05D009155 1.7e-68 263.5 232 63.8
Ca_03042_v3 Cicer arietinum L. HOM05D007059 ORTHO05D009155 8.3e-68 261.2 235 62.6
Cc11_g00200 Coffea canephora HOM05D007059 ORTHO05D009155 8.3e-68 261.2 246 61.0
Gohir.D01G138500 Gossypium hirsutum HOM05D007059 ORTHO05D009155 8.3e-68 261.2 250 60.0
Glyma.12G029100 Glycine max HOM05D007059 ORTHO05D009155 1.4e-67 260.4 232 60.8
VMungo1127G1389 Vigna mungo HOM05D007059 ORTHO05D009155 2.4e-67 259.6 232 62.1
MELO3C020030.2 Cucumis melo HOM05D007059 ORTHO05D009155 4.1e-67 258.8 244 58.6
Lj3g0001367 Lotus japonicus HOM05D007059 ORTHO05D009155 5.4e-67 258.5 236 60.6
Manes.16G044801 Manihot esculenta HOM05D007059 ORTHO05D009155 7.1e-67 258.1 244 61.5
TPR.G21564 Trifolium pratense HOM05D007059 ORTHO05D009155 2.1e-66 256.5 240 59.6
Medtr4g074210 Medicago truncatula HOM05D007059 ORTHO05D009155 3.5e-66 255.8 237 59.9
Gorai.002G167400 Gossypium raimondii HOM05D007059 ORTHO05D009155 4.6e-66 255.4 251 60.2
Lalb_Chr01g0001591 Lupinus albus HOM05D007059 ORTHO05D009155 1.0e-65 254.2 239 58.2
AL3G33460 Arabidopsis lyrata HOM05D007059 ORTHO05D009155 1.7e-65 253.4 230 60.0
Gohir.A01G145900 Gossypium hirsutum HOM05D007059 ORTHO05D009155 3.9e-65 252.3 250 58.8
Carub.0003s1980 Capsella rubella HOM05D007059 ORTHO05D009155 8.6e-65 251.1 233 61.4
ClCG11G001160 Citrullus lanatus HOM05D007059 ORTHO05D009155 8.6e-65 251.1 252 58.3
Thhalv10021482m.g Eutrema salsugineum HOM05D007059 ORTHO05D009155 1.9e-64 250.0 229 59.8
BcaC09g48947 Brassica carinata HOM05D007059 ORTHO05D009155 5.6e-64 248.4 223 63.2
C01p44250 Brassica napus HOM05D007059 ORTHO05D009155 5.6e-64 248.4 223 63.2
BolC1t04385H Brassica oleracea HOM05D007059 ORTHO05D009155 5.6e-64 248.4 223 63.2
Haze_11738 Corylus avellana HOM05D007059 ORTHO05D009155 5.6e-64 248.4 214 65.0
Sp3g17910 Schrenkiella parvula HOM05D007059 ORTHO05D009155 9.5e-64 247.7 191 68.1
CARHR095430 Cardamine hirsuta HOM05D007059 ORTHO05D009155 1.6e-63 246.9 228 61.0
Aqoxy3G04246 Aquilegia oxysepala HOM05D007059 ORTHO05D009155 3.6e-63 245.7 201 68.2
MSTRG.2053 Avicennia marina HOM05D007059 ORTHO05D009155 4.7e-63 245.4 246 58.9
Sed0015909 Sechium edule HOM05D007059 ORTHO05D009155 4.7e-63 245.4 244 57.0
Migut.E00704 Erythranthe guttata HOM05D007059 ORTHO05D009155 8.1e-63 244.6 241 58.9
Sc10g0008670 Simmondsia chinensis HOM05D007059 ORTHO05D009155 2.4e-62 243.0 250 58.0
TWI77G0260 Tripterygium wilfordii HOM05D007059 ORTHO05D009155 4.0e-62 242.3 205 64.9
arahy.Tifrunner.gnm1.ann1.NRJ0Q8 Arachis hypogaea HOM05D007059 ORTHO05D009155 4.4e-61 238.8 228 59.6
arahy.Tifrunner.gnm1.ann1.PC0HA4 Arachis hypogaea HOM05D007059 ORTHO05D009155 4.4e-61 238.8 228 59.6
A01p34850 Brassica napus HOM05D007059 ORTHO05D009155 1.7e-60 236.9 223 61.9
BraA01t03568Z Brassica rapa HOM05D007059 ORTHO05D009155 1.7e-60 236.9 223 61.9
Duzib251G0490 Durio zibethinus HOM05D007059 ORTHO05D009155 2.9e-60 236.1 249 57.0
Cpa.g.sc298.2 Carica papaya HOM05D007059 ORTHO05D009155 4.9e-60 235.3 210 64.3
AUR62017646 Chenopodium quinoa HOM05D007059 ORTHO05D009155 1.4e-59 233.8 247 55.9
unitig_27.g25281 Utricularia gibba HOM05D007059 ORTHO05D009155 2.1e-58 229.9 189 66.7
AUR62012864 Chenopodium quinoa HOM05D007059 ORTHO05D009155 7.8e-58 228.0 220 59.5
CANSAT35G1437 Cannabis sativa HOM05D007059 ORTHO05D009155 1.0e-57 227.6 219 59.4
Aa31LG8G6740 Aethionema arabicum HOM05D007059 ORTHO05D009155 6.6e-57 224.9 295 49.8
ATR0124G031 Amborella trichopoda HOM05D007059 ORTHO05D009155 1.1e-56 224.2 155 71.6
HPP92_002491 Vanilla planifolia HOM05D007059 ORTHO05D009155 1.6e-55 220.3 217 56.2
HPP92_002544 Vanilla planifolia HOM05D007059 ORTHO05D009155 1.6e-55 220.3 211 57.3
EL10Ac9g22903 Beta vulgaris HOM05D007059 ORTHO05D009155 4.7e-55 218.8 171 67.8
Migut.E00613 Erythranthe guttata HOM05D007059 ORTHO05D009155 2.4e-54 216.5 183 62.3
Oeu027905.1 Olea europaea HOM05D007059 ORTHO05D009155 6.9e-54 214.9 169 69.8
Dinv01917 Davidia involucrata HOM05D007059 ORTHO05D009155 1.5e-53 213.8 245 53.9
Zm00001eb259420 Zea mays HOM05D007059 ORTHO05D009155 4.4e-53 212.2 143 74.1
Hund08500 Selenicereus undatus HOM05D007059 ORTHO05D009155 2.2e-52 209.9 214 55.1
THA.LOC104801903 Tarenaya hassleriana HOM05D007059 ORTHO05D009155 8.4e-52 208.0 220 55.9
SGA_v2.0_scaffold88G27235 Striga asiatica HOM05D007059 ORTHO05D009155 9.3e-51 204.5 218 56.9
AagrBONN_evm.TU.Sc2ySwM_344.1288 Anthoceros agrestis HOM05D007059 ORTHO05D009155 1.6e-50 203.8 174 61.5
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 3.5e-50 202.6 140 77.1
Pp3c2_14430 Physcomitrium patens HOM05D007059 ORTHO05D009155 3.5e-50 202.6 171 60.2
Pp3c10_16080 Physcomitrium patens HOM05D007059 ORTHO05D009155 1.3e-49 200.7 196 55.6
SMO114G0039 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 8.7e-49 198.0 142 70.4
Mapoly0055s0010 Marchantia polymorpha HOM05D007059 ORTHO05D009155 1.7e-44 183.7 162 58.6
Actinidia13703 Actinidia chinensis HOM05D007059 ORTHO05D009155 6.4e-44 181.8 182 59.3
PGR031G0357 Punica granatum HOM05D007059 ORTHO05D009155 2.0e-37 160.2 238 43.7
CsaV3_5G013210 Cucumis sativus L. HOM05D007059 ORTHO05D009155 4.6e-34 149.1 176 49.4
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 1.3e-33 147.5 156 56.4
CBR_g48375 Chara braunii HOM05D007059 ORTHO05D009155 7.6e-29 131.7 201 40.3
AT3G19900 Arabidopsis thaliana HOM05D007059 ORTHO05D009155 1.5e-24 117.5 145 49.0
SEGI_27177 Sequoiadendron giganteum HOM05D007059 ORTHO05D009155 5.9e-21 105.5 58 84.5
Actinidia14379 Actinidia chinensis HOM05D007059 ORTHO05D009155 6.5e-20 102.1 182 40.7
BolC5t33201H Brassica oleracea HOM05D007059 ORTHO05D009155 2.5e-19 100.1 101 58.4
Cre01.g007050 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D009155 2.8e-15 86.7 154 35.1
SMO364G0884 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 3.1e-14 83.2 82 53.7
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 3.8e-12 76.3 91 48.4
BraA05t21808Z Brassica rapa HOM05D007059 ORTHO05D040342 1.2e-10 71.2 58 63.8
A05p29230 Brassica napus HOM05D007059 ORTHO05D040342 7.9e-10 68.6 49 71.4
MCO14G049 Micromonas commoda HOM05D007059 ORTHO05D009155 3.9e-09 66.2 91 36.3
Cre03.g197850 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D034487 1.7e-07 60.8 162 25.3


User provided reference genes

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