Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.1e-66 256.5 132 100.0
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 4.0e-53 211.5 123 86.2
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 9.0e-53 210.3 120 87.5
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 2.6e-52 208.8 128 82.8
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.6e-52 208.8 131 82.4
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 3.4e-52 208.4 124 84.7
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 3.4e-52 208.4 130 84.6
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 5.8e-52 207.6 131 79.4
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 9.9e-52 206.8 131 79.4
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 9.9e-52 206.8 128 83.6
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 9.9e-52 206.8 132 78.0
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 9.9e-52 206.8 128 81.2
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 1.3e-51 206.5 128 78.9
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.7e-51 206.1 125 83.2
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.7e-51 206.1 128 81.2
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 1.7e-51 206.1 129 79.1
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.2e-51 205.7 125 83.2
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.9e-51 205.3 128 82.8
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 3.8e-51 204.9 131 79.4
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 3.8e-51 204.9 115 88.7
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 4.9e-51 204.5 133 79.7
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.9e-51 204.5 131 78.6
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 4.9e-51 204.5 115 88.7
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 6.4e-51 204.1 129 79.1
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 8.4e-51 203.8 115 87.8
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 8.4e-51 203.8 121 86.0
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 8.4e-51 203.8 115 87.8
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 8.4e-51 203.8 115 87.8
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 1.1e-50 203.4 128 77.3
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 1.1e-50 203.4 128 77.3
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 1.1e-50 203.4 131 79.4
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.4e-50 203.0 117 84.6
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 1.9e-50 202.6 138 77.5
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 2.4e-50 202.2 115 87.0
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 3.2e-50 201.8 128 79.7
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 3.2e-50 201.8 115 87.0
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 5.5e-50 201.1 115 87.0
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 7.1e-50 200.7 128 79.7
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 7.1e-50 200.7 114 86.8
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 9.3e-50 200.3 128 81.2
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.6e-49 199.5 132 75.8
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 2.1e-49 199.1 118 84.7
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.1e-49 199.1 120 82.5
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 2.7e-49 198.7 128 79.7
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.7e-49 198.7 131 76.3
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 2.7e-49 198.7 114 86.0
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.5e-49 198.4 123 80.5
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 3.5e-49 198.4 114 86.0
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 3.5e-49 198.4 114 86.0
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.5e-49 198.4 120 82.5
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 3.5e-49 198.4 133 76.7
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 4.6e-49 198.0 130 78.5
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 4.6e-49 198.0 134 75.4
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 4.6e-49 198.0 115 84.3
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 7.9e-49 197.2 128 79.7
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 7.9e-49 197.2 128 79.7
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 1.0e-48 196.8 115 84.3
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 1.0e-48 196.8 128 79.7
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.3e-48 196.4 133 72.9
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 2.3e-48 195.7 129 78.3
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 2.3e-48 195.7 115 84.3
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 2.3e-48 195.7 111 88.3
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.0e-48 195.3 128 78.9
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 3.0e-48 195.3 127 78.7
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 3.9e-48 194.9 128 78.9
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 5.1e-48 194.5 123 77.2
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 6.7e-48 194.1 128 78.1
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 6.7e-48 194.1 128 78.1
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 6.7e-48 194.1 128 78.1
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 6.7e-48 194.1 128 78.1
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 6.7e-48 194.1 117 80.3
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 8.7e-48 193.7 114 83.3
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 8.7e-48 193.7 116 81.9
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.5e-47 193.0 115 82.6
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.9e-47 192.6 127 78.0
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 1.9e-47 192.6 128 77.3
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 1.9e-47 192.6 128 77.3
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.9e-47 192.6 128 78.1
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.9e-47 192.6 116 81.9
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 2.5e-47 192.2 115 83.5
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 3.3e-47 191.8 128 78.1
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 3.3e-47 191.8 128 78.1
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 4.3e-47 191.4 129 76.0
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 4.3e-47 191.4 129 76.0
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 4.3e-47 191.4 129 76.0
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 4.3e-47 191.4 128 76.6
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 4.3e-47 191.4 115 80.9
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.6e-47 191.0 123 79.7
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 5.6e-47 191.0 115 82.6
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 5.6e-47 191.0 115 80.9
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 7.4e-47 190.7 115 80.9
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 7.4e-47 190.7 115 80.9
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-46 189.5 115 80.9
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 6.2e-46 187.6 114 78.9
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 6.2e-46 187.6 173 59.5
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.2e-46 187.2 115 79.1
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 8.2e-46 187.2 118 78.0
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.4e-45 186.4 114 78.9
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-45 186.4 115 80.0
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.4e-45 186.4 121 78.5
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.8e-45 186.0 115 78.3
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-45 186.0 115 79.1
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 1.8e-45 186.0 115 79.1
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 2.4e-45 185.7 115 79.1
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 2.4e-45 185.7 115 79.1
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 2.4e-45 185.7 114 79.8
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.1e-45 185.3 115 77.4
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-45 184.9 115 78.3
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 5.3e-45 184.5 162 63.6
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 5.3e-45 184.5 114 79.8
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.9e-45 184.1 115 76.5
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-44 183.0 115 75.7
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-44 183.0 115 75.7
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.6e-44 182.2 115 75.7
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.6e-44 182.2 116 79.3
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 5.8e-44 181.0 128 72.7
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.0e-43 180.3 123 74.8
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.0e-43 180.3 123 74.8
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 1.0e-43 180.3 128 74.2
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.3e-43 179.9 129 71.3
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-43 179.9 118 74.6
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.3e-43 179.9 128 71.9
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 2.2e-43 179.1 114 77.2
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 4.9e-43 177.9 123 71.5
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 1.1e-42 176.8 123 70.7
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 4.2e-42 174.9 129 72.1
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 3.0e-40 168.7 164 59.8
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.9e-39 166.0 115 70.4
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.5e-39 165.6 115 70.4
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 9.7e-39 163.7 128 62.5
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.3e-38 163.3 115 71.3
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 2.8e-38 162.2 115 65.2
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.8e-38 161.4 115 69.6
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.8e-37 159.5 99 79.8
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 3.1e-37 158.7 115 73.0
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 7.6e-36 154.1 115 61.7
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.4e-34 149.8 115 64.3
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.5e-34 149.1 102 74.5
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 2.5e-34 149.1 87 85.1
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 3.2e-34 148.7 123 58.5
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 2.5e-31 139.0 203 40.9
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 5.7e-31 137.9 88 81.8
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 2.6e-28 129.0 77 88.3
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.7e-27 126.3 70 90.0
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 9.4e-26 120.6 128 47.7
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 9.4e-26 120.6 71 84.5
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 9.4e-26 120.6 71 84.5
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 3.6e-25 118.6 71 84.5
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 5.1e-24 114.8 64 90.6
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.5e-23 113.2 116 47.4
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-21 106.7 65 81.5
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 9.1e-21 104.0 61 75.4
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 8.5e-19 97.4 59 76.3
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.1e-18 97.1 59 76.3
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.0e-16 89.0 59 69.5
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.5e-15 86.7 62 72.6
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 2.0e-15 86.3 70 68.6
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 7.4e-15 84.3 51 74.5
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 7.4e-15 84.3 104 38.5
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 9.7e-15 84.0 62 71.0
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 4.5e-12 75.1 108 33.3
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.3e-11 73.6 62 67.7
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.3e-11 73.6 62 67.7
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.7e-11 73.2 47 74.5
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 6.7e-08 61.2 59 57.6


User provided reference genes

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