Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 1.3e-157 559.7 275 100.0
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 2.6e-118 429.1 277 77.3
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 1.0e-114 417.2 272 73.9
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.9e-114 415.6 272 74.3
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 6.5e-114 414.5 272 73.9
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 7.2e-113 411.0 273 73.6
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 8.0e-112 407.5 271 72.0
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 2.3e-111 406.0 267 74.5
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 4.4e-110 401.7 275 71.3
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 9.8e-110 400.6 270 73.0
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 9.8e-110 400.6 273 72.9
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 1.3e-109 400.2 275 70.2
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 1.7e-109 399.8 277 71.5
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 1.7e-109 399.8 270 73.0
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 2.2e-109 399.4 270 72.6
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 4.9e-109 398.3 271 71.2
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 6.3e-109 397.9 277 71.1
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 1.1e-108 397.1 270 72.2
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.4e-108 396.7 277 71.1
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 1.2e-107 393.7 273 69.6
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 1.6e-107 393.3 273 70.0
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 4.5e-107 391.7 277 69.0
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 5.9e-107 391.3 272 71.3
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 2.3e-106 389.4 274 71.5
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 2.9e-106 389.0 272 68.4
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 6.6e-106 387.9 272 68.4
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 1.5e-105 386.7 276 71.0
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 4.2e-105 385.2 272 69.1
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 5.5e-105 384.8 273 69.2
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 5.5e-105 384.8 272 70.6
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 9.5e-105 384.0 271 70.8
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 2.1e-104 382.9 270 70.4
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 2.1e-104 382.9 280 68.9
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 4.7e-104 381.7 274 70.1
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 1.4e-103 380.2 275 66.9
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 1.4e-103 380.2 272 68.4
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 1.8e-103 379.8 270 69.6
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.3e-103 379.4 269 69.5
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 5.2e-103 378.3 273 68.5
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 8.9e-103 377.5 272 66.2
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 8.9e-103 377.5 253 72.7
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 3.4e-102 375.6 272 69.1
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 5.7e-102 374.8 274 68.2
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 5.7e-102 374.8 250 72.8
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.3e-101 373.6 269 67.7
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 2.2e-101 372.9 280 66.4
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 6.3e-101 371.3 274 68.6
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 8.3e-101 370.9 269 66.9
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 8.3e-101 370.9 250 70.4
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.1e-100 370.5 272 68.8
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.4e-100 369.4 270 65.6
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 2.7e-99 365.9 278 65.1
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 3.5e-99 365.5 273 67.8
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 5.9e-99 364.8 271 65.3
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.7e-98 363.2 269 65.4
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 2.9e-98 362.5 251 71.3
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 5.0e-98 361.7 276 65.6
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 1.1e-97 360.5 278 66.5
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 1.1e-97 360.5 273 65.2
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 1.1e-97 360.5 273 66.3
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.5e-97 359.4 271 64.2
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 2.5e-97 359.4 270 64.8
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 2.5e-97 359.4 274 65.3
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 3.3e-97 359.0 273 65.9
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 3.3e-97 359.0 276 65.2
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 5.6e-97 358.2 270 63.7
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 5.6e-97 358.2 276 65.2
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 9.5e-97 357.5 270 63.3
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 2.1e-96 356.3 274 65.3
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 2.1e-96 356.3 276 63.8
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 3.6e-96 355.5 273 65.9
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 8.0e-96 354.4 272 63.6
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 8.0e-96 354.4 276 64.5
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 8.0e-96 354.4 273 65.9
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 8.0e-96 354.4 270 62.2
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 1.4e-95 353.6 275 62.9
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 2.3e-95 352.8 270 64.4
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 3.1e-95 352.4 271 64.6
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 6.8e-95 351.3 310 57.4
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 8.9e-95 350.9 270 61.9
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 8.9e-95 350.9 270 63.0
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.0e-94 349.7 271 63.5
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 3.4e-94 349.0 272 63.2
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 4.4e-94 348.6 279 64.5
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 5.8e-94 348.2 270 62.2
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 2.9e-93 345.9 270 63.0
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 2.9e-93 345.9 271 63.1
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 2.9e-93 345.9 271 63.1
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 2.9e-93 345.9 269 63.2
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 1.4e-92 343.6 272 63.2
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 4.1e-92 342.0 262 66.0
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 7.0e-92 341.3 278 62.2
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 7.0e-92 341.3 271 62.7
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 7.0e-92 341.3 271 62.7
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 7.0e-92 341.3 311 58.5
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.2e-91 340.5 259 66.0
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 2.0e-91 339.7 273 63.0
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 2.0e-91 339.7 276 61.2
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 1.3e-90 337.0 270 61.9
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 5.0e-90 335.1 271 60.1
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 6.6e-90 334.7 277 58.1
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 1.5e-89 333.6 227 69.6
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 3.3e-89 332.4 236 68.6
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 5.6e-89 331.6 240 68.8
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 2.3e-87 326.2 363 49.6
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 3.1e-87 325.9 241 64.7
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 6.8e-87 324.7 232 67.7
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 2.6e-86 322.8 274 59.5
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 9.8e-86 320.9 272 58.8
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 5.4e-84 315.1 341 52.5
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 8.1e-80 301.2 274 54.0
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 2.5e-73 279.6 262 58.0
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.1e-71 274.2 266 52.6
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 3.2e-68 262.7 233 58.8
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 6.6e-66 255.0 281 50.2
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 2.4e-63 246.5 154 74.7
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 8.4e-61 238.0 186 58.6
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.6e-59 233.8 261 45.6
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 6.7e-50 201.8 265 44.5
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.3e-42 176.8 138 65.2
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 6.7e-42 175.3 262 40.1
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 5.7e-41 172.2 128 61.7
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.8e-34 150.6 143 56.6
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 8.2e-24 115.2 334 29.3
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 3.7e-16 89.7 49 85.7
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 1.1e-15 88.2 45 91.1
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 1.2e-11 74.7 84 45.2
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 3.0e-10 70.1 43 74.4
SEGI_34336 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 3.5e-06 56.6 33 81.8


User provided reference genes

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