Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 5.0e-151 537.7 271 100.0
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 5.1e-95 351.7 264 69.7
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 9.7e-94 347.4 262 69.5
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 2.4e-92 342.8 264 68.2
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 6.9e-92 341.3 246 70.3
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 1.2e-91 340.5 245 70.2
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 1.5e-91 340.1 252 69.0
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 2.6e-91 339.3 261 68.6
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 3.4e-91 339.0 256 68.4
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 4.5e-91 338.6 251 69.3
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 7.7e-91 337.8 246 69.5
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.3e-90 337.0 267 64.8
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.7e-90 336.7 246 69.9
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 2.2e-90 336.3 263 65.8
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.2e-90 336.3 267 65.2
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 2.9e-90 335.9 261 66.7
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 3.8e-90 335.5 258 66.7
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 3.8e-90 335.5 263 65.4
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 5.0e-90 335.1 252 68.3
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 5.0e-90 335.1 266 66.2
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 5.0e-90 335.1 247 68.4
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 1.1e-89 334.0 253 65.6
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 1.4e-89 333.6 258 67.4
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.4e-89 333.6 267 64.0
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 1.4e-89 333.6 247 68.8
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 3.2e-89 332.4 247 67.6
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 3.2e-89 332.4 246 67.1
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 5.5e-89 331.6 265 63.4
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 1.6e-88 330.1 263 64.6
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 2.1e-88 329.7 263 65.4
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 4.7e-88 328.6 262 65.6
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 4.7e-88 328.6 256 66.8
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 4.7e-88 328.6 247 67.6
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 4.7e-88 328.6 261 65.9
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 1.4e-87 327.0 256 66.4
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 1.4e-87 327.0 256 66.8
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 1.4e-87 327.0 269 62.1
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 1.4e-87 327.0 256 66.4
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 1.4e-87 327.0 263 62.7
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 1.8e-87 326.6 246 66.3
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 2.3e-87 326.2 246 67.1
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 3.0e-87 325.9 246 66.7
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 3.0e-87 325.9 261 63.2
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 3.9e-87 325.5 262 62.6
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 5.1e-87 325.1 256 66.8
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 8.8e-87 324.3 256 66.4
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 8.8e-87 324.3 251 64.5
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 1.5e-86 323.6 246 67.5
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-86 323.6 245 67.3
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.0e-86 323.2 266 62.4
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 3.3e-86 322.4 247 64.4
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 3.3e-86 322.4 256 65.6
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 3.3e-86 322.4 262 66.0
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 4.4e-86 322.0 244 66.0
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 4.4e-86 322.0 244 66.0
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 4.4e-86 322.0 268 64.6
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 5.7e-86 321.6 256 65.6
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 5.7e-86 321.6 256 65.6
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 7.4e-86 321.2 247 64.8
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 9.7e-86 320.9 262 61.1
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 9.7e-86 320.9 259 64.1
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 1.7e-85 320.1 261 65.1
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 2.2e-85 319.7 263 61.6
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 2.8e-85 319.3 247 65.2
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 3.7e-85 318.9 249 66.3
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 3.7e-85 318.9 251 64.9
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.4e-84 317.0 245 62.4
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.4e-84 317.0 245 62.4
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 9.1e-84 314.3 246 64.6
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 9.1e-84 314.3 246 63.8
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 1.2e-83 313.9 284 59.2
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 1.5e-83 313.5 261 60.9
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.0e-83 313.2 256 63.3
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 2.0e-83 313.2 258 62.8
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 2.6e-83 312.8 266 62.0
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 3.4e-83 312.4 249 63.9
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 3.4e-83 312.4 283 60.1
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 7.7e-83 311.2 249 65.1
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 1.0e-82 310.8 263 62.0
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 5.0e-82 308.5 247 64.0
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 8.5e-82 307.8 244 63.1
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 8.5e-82 307.8 237 65.4
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 2.5e-81 306.2 256 60.2
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 3.2e-81 305.8 243 63.8
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 4.2e-81 305.4 237 64.6
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 1.2e-80 303.9 247 61.9
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 1.4e-79 300.4 256 61.7
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.8e-79 300.1 278 57.2
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 3.0e-79 299.3 256 60.9
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 5.2e-79 298.5 246 60.2
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 6.7e-79 298.1 251 61.0
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.1e-78 297.4 266 58.6
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 2.6e-78 296.2 247 59.5
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 5.7e-78 295.0 248 59.3
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 9.7e-78 294.3 269 57.2
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.8e-77 292.0 268 58.6
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.4e-76 290.4 262 58.8
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 2.4e-76 289.7 247 57.9
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 4.5e-75 285.4 257 57.2
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 5.9e-75 285.0 257 57.2
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.0e-74 284.3 245 61.6
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 5.5e-73 278.5 247 57.5
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 5.5e-73 278.5 247 57.5
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.2e-73 278.1 260 54.6
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 8.8e-71 271.2 248 54.4
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 1.5e-70 270.4 263 54.4
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 9.7e-70 267.7 234 59.0
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 4.8e-69 265.4 253 54.9
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 6.3e-69 265.0 247 55.5
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 3.1e-68 262.7 244 57.8
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.1e-68 262.7 261 52.1
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.5e-67 259.2 235 58.7
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.5e-65 253.1 259 52.5
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 3.2e-65 252.7 243 54.3
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 5.5e-65 251.9 263 53.6
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 3.0e-63 246.1 262 49.6
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 8.8e-63 244.6 278 47.1
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 8.3e-61 238.0 248 48.8
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 1.8e-60 236.9 249 47.8
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 1.2e-59 234.2 249 47.0
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 7.7e-59 231.5 227 53.7
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 1.2e-56 224.2 189 62.4
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 2.3e-55 219.9 230 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 3.4e-54 216.1 263 45.6
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.2e-51 207.6 222 48.6
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 4.5e-51 205.7 239 45.6
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 8.6e-42 174.9 258 38.4
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 2.1e-40 170.2 227 45.4
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 5.2e-31 139.0 180 44.4
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 3.4e-30 136.3 157 49.0
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 2.1e-27 127.1 141 48.9
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.7e-26 124.0 112 59.8
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 3.1e-23 113.2 132 50.0
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 6.0e-19 99.0 111 42.3
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.1e-16 90.5 167 38.3
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.8e-15 87.4 150 32.0
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 9.0e-15 85.1 53 73.6
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 4.4e-14 82.8 48 77.1
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 4.2e-12 76.3 89 47.2
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 9.3e-12 75.1 63 58.7
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 3.9e-10 69.7 56 66.1
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.9e-10 69.7 57 56.1
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 2.5e-09 67.0 48 68.8
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-07 61.6 79 44.3
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 2.4e-07 60.5 140 30.0
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 6.9e-07 58.9 72 34.7
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-06 57.8 32 84.4
SEGI_22616 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.5e-06 56.2 69 36.2


User provided reference genes

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