Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 0.0e+00 1978.8 1005 100.0
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1487.6 1072 71.9
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1426.4 1074 68.0
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1379.4 1080 66.7
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1369.8 1070 67.0
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1349.3 1044 66.7
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1338.9 1029 67.2
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 0.0e+00 1321.2 1070 64.2
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 0.0e+00 1295.4 1074 64.4
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1295.0 1072 62.9
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1293.1 1125 61.4
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1290.0 1061 64.1
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1284.2 1076 62.1
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1280.0 1076 63.1
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1272.7 1077 62.1
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1271.5 1055 64.2
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 0.0e+00 1270.4 1066 63.0
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1268.1 1075 62.8
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1265.8 1075 62.9
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 0.0e+00 1265.4 1066 62.8
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 0.0e+00 1263.1 1070 62.8
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1262.3 1076 60.9
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1261.5 1076 61.7
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1259.6 1069 61.5
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1251.9 1074 61.9
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1247.3 1069 61.3
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1247.3 942 67.3
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 0.0e+00 1245.7 1066 62.2
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 0.0e+00 1238.8 1070 62.0
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1231.1 1079 60.9
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1230.3 1073 61.9
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1224.9 1081 60.5
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 0.0e+00 1224.5 985 64.5
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1219.5 1075 59.8
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1212.6 1083 59.2
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1209.9 1075 60.4
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1207.6 1076 59.6
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 0.0e+00 1201.8 1075 59.3
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1198.3 1074 58.7
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1196.0 1081 58.5
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1192.6 1079 58.3
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1192.6 1075 58.2
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1189.9 1074 58.5
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1189.1 1090 58.3
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1189.1 1075 57.7
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 0.0e+00 1186.0 1053 60.3
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1182.9 1085 58.2
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1177.5 1076 57.7
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1175.6 1080 57.0
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 0.0e+00 1174.8 1076 58.6
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1174.8 1076 56.9
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 0.0e+00 1153.3 1065 58.0
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 0.0e+00 1150.6 1146 55.9
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 0.0e+00 1149.0 1076 56.4
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 0.0e+00 1148.3 1041 58.4
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 0.0e+00 1146.7 1080 56.1
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1134.0 1069 55.7
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 0.0e+00 1116.7 1082 56.8
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 0.0e+00 1088.6 1091 55.2
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 0.0e+00 1080.9 1176 51.5
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 4.4e-309 1064.7 1079 53.1
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 1.4e-307 1059.7 1072 53.9
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 3.2e-307 1058.5 1076 55.3
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 2.8e-303 1045.4 1071 52.0
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 2.3e-302 1042.3 1073 53.5
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 2.6e-301 1038.9 1069 51.8
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 8.3e-300 1033.9 1083 52.7
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 9.2e-299 1030.4 1080 52.7
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 7.8e-298 1027.3 1078 54.1
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 1.7e-297 1026.2 1079 50.8
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 8.6e-297 1023.8 1071 52.7
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 1.1e-296 1023.5 1088 52.1
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 4.3e-296 1021.5 1058 51.1
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 5.6e-296 1021.1 1025 52.7
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 1.6e-295 1019.6 1103 50.5
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 3.6e-295 1018.5 1054 51.6
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 5.4e-291 1004.6 945 54.6
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 2.3e-289 999.2 1067 50.6
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 2.8e-287 992.3 1082 50.7
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.6e-287 991.9 1062 53.9
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 6.2e-287 991.1 1082 50.6
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 3.5e-282 975.3 1073 51.7
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 3.7e-247 859.0 710 63.0
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.2e-234 817.4 597 70.2
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 1.1e-227 794.3 1102 41.7
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 4.1e-222 775.8 642 60.7
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 9.4e-219 764.6 1093 40.9
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 9.4e-219 764.6 1093 40.9
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 4.4e-208 729.2 978 41.9
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 3.5e-181 639.8 1017 37.4
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.8e-169 600.9 1054 36.0
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 1.7e-159 567.8 459 63.0
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 8.4e-159 565.5 603 50.9
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 1.6e-157 561.2 430 65.6
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 7.6e-136 489.2 429 60.6
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 1.4e-113 415.2 420 54.5
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.6e-109 401.7 456 46.7
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 3.7e-98 364.0 793 31.0
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 9.1e-89 332.8 410 51.5
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.2e-88 332.4 220 73.2
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 1.0e-84 319.3 285 56.5
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 6.1e-77 293.5 323 50.8
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 1.3e-74 285.8 419 42.2
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 9.2e-73 279.6 460 35.9
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 5.6e-70 270.4 338 46.2
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 7.5e-67 260.0 957 26.2
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 7.5e-67 260.0 799 26.9
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 5.4e-65 253.8 645 29.6
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 5.6e-38 164.1 152 54.6
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.4e-36 159.5 87 85.1
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 3.9e-31 141.4 246 38.2
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 7.4e-30 137.1 138 55.8
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 2.1e-29 135.6 183 46.4
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.8e-29 135.2 122 51.6
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 1.8e-28 132.5 103 62.1
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 4.5e-27 127.9 114 56.1
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 1.4e-25 122.9 79 68.4
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.9e-25 122.5 115 51.3
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 7.1e-25 120.6 137 51.1
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 3.9e-23 114.8 123 46.3
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 6.7e-23 114.0 103 55.3
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 5.7e-22 110.9 81 66.7
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 1.3e-21 109.8 655 24.1
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 3.7e-21 108.2 111 55.0
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 4.8e-21 107.8 651 24.0
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 8.2e-21 107.1 661 23.4
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 8.2e-21 107.1 87 62.1
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 8.2e-21 107.1 87 62.1
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 1.1e-20 106.7 130 43.8
MCO08G239 Micromonas commoda HOM05D002786 ORTHO05D003493 3.1e-20 105.1 648 22.5
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 4.1e-20 104.8 663 23.8
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 6.9e-20 104.0 88 54.5
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 1.5e-19 102.8 83 63.9
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 5.8e-19 100.9 648 23.5
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 2.2e-18 99.0 654 23.7
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 3.8e-18 98.2 130 41.5
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 2.3e-15 89.0 67 64.2
A03p17820 Brassica napus HOM05D002786 ORTHO05D003493 1.1e-14 86.7 653 22.7
BraA03t11046Z Brassica rapa HOM05D002786 ORTHO05D003493 2.5e-14 85.5 646 22.0
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 3.1e-12 78.6 65 53.8
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 3.1e-12 78.6 541 22.0
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 5.3e-12 77.8 48 70.8
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 5.5e-09 67.8 201 30.8
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 7.2e-09 67.4 154 37.0
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 6.1e-08 64.3 39 79.5
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 1.8e-07 62.8 284 25.7
CDE09G0536 Ceratophyllum demersum HOM05D005298 ORTHO05D043882 1.1e-06 60.1 74 52.7
Zm00001eb082360 Zea mays HOM05D005298 ORTHO05D030733 7.4e-06 57.4 44 52.3
Zm00001eb383150 Zea mays HOM05D005298 ORTHO05D030733 7.4e-06 57.4 44 52.3


User provided reference genes

Program Settings