Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 1.3e-188 662.9 326 100.0
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 7.0e-115 417.9 337 66.8
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 9.8e-109 397.5 285 69.8
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 2.4e-107 392.9 329 63.5
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 7.0e-107 391.3 253 75.9
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 9.2e-107 391.0 272 69.5
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 1.6e-106 390.2 250 75.6
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 1.6e-106 390.2 305 66.2
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 2.7e-106 389.4 251 76.1
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 3.5e-106 389.0 256 73.8
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 4.6e-106 388.7 250 73.6
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 1.3e-105 387.1 288 67.0
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 1.7e-105 386.7 290 66.2
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 3.0e-105 386.0 249 75.9
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 3.9e-105 385.6 283 68.6
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 3.9e-105 385.6 311 65.9
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 5.0e-105 385.2 332 62.0
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 6.6e-105 384.8 252 75.4
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 8.6e-105 384.4 250 74.8
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 8.6e-105 384.4 318 63.2
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 2.5e-104 382.9 261 70.9
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 2.5e-104 382.9 305 63.6
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 4.3e-104 382.1 331 61.3
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 4.3e-104 382.1 332 62.0
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 5.6e-104 381.7 254 72.0
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 5.6e-104 381.7 331 61.6
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 7.3e-104 381.3 271 69.4
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 9.5e-104 380.9 325 62.2
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 1.2e-103 380.6 284 68.0
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 1.2e-103 380.6 322 63.7
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 1.6e-103 380.2 334 61.4
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 1.6e-103 380.2 267 70.8
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 1.6e-103 380.2 278 69.4
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 2.1e-103 379.8 250 73.2
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 2.1e-103 379.8 327 63.9
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 2.8e-103 379.4 270 69.6
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.8e-103 379.4 314 63.7
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 2.8e-103 379.4 278 69.8
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 3.6e-103 379.0 250 73.2
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 4.7e-103 378.6 250 75.2
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 6.2e-103 378.3 332 61.1
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 8.0e-103 377.9 299 65.2
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 1.8e-102 376.7 331 61.0
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 4.0e-102 375.6 303 64.7
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 6.8e-102 374.8 268 67.9
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 8.9e-102 374.4 313 62.9
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 8.9e-102 374.4 302 63.2
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 1.2e-101 374.0 328 61.0
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 1.5e-101 373.6 280 68.6
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 2.0e-101 373.2 303 62.7
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 3.4e-101 372.5 334 61.4
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 7.5e-101 371.3 257 69.6
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 9.8e-101 370.9 313 64.2
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 1.3e-100 370.5 314 61.8
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 1.7e-100 370.2 259 71.4
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 1.7e-100 370.2 250 71.2
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 2.2e-100 369.8 299 62.9
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 2.2e-100 369.8 322 60.6
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 2.9e-100 369.4 305 62.3
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 4.9e-100 368.6 302 62.3
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 4.9e-100 368.6 302 64.9
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 4.9e-100 368.6 309 62.1
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 8.3e-100 367.9 305 62.0
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 1.1e-99 367.5 318 62.6
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 1.9e-99 366.7 257 69.6
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 2.4e-99 366.3 257 69.3
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 2.4e-99 366.3 252 71.4
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 4.1e-99 365.5 322 60.2
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 4.1e-99 365.5 255 70.6
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 9.2e-99 364.4 299 62.2
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 1.2e-98 364.0 257 68.9
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 2.0e-98 363.2 303 62.4
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 6.0e-98 361.7 299 64.9
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 6.0e-98 361.7 249 71.5
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 7.8e-98 361.3 245 70.6
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 1.3e-97 360.5 308 62.7
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 3.9e-97 359.0 299 61.2
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 8.6e-97 357.8 314 58.9
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 8.6e-97 357.8 304 62.2
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.5e-96 357.1 254 66.9
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 3.3e-96 355.9 317 59.3
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 3.3e-96 355.9 254 66.5
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 1.6e-95 353.6 304 61.5
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 1.6e-95 353.6 250 67.2
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 2.1e-95 353.2 274 66.1
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 2.8e-95 352.8 256 67.2
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 1.4e-94 350.5 306 60.8
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 1.2e-93 347.4 258 65.5
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 2.0e-93 346.7 255 70.2
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 4.1e-91 339.0 254 64.6
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 6.0e-90 335.1 321 53.6
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 3.0e-89 332.8 250 61.2
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 5.1e-89 332.0 250 63.2
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 4.7e-87 325.5 250 60.0
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 1.8e-86 323.6 257 58.8
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 1.5e-85 320.5 251 62.2
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 4.9e-84 315.5 236 61.9
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 6.4e-84 315.1 250 58.8
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 1.1e-83 314.3 249 58.6
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.9e-83 313.5 275 56.0
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 2.4e-83 313.2 254 59.1
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 5.4e-83 312.0 236 61.0
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 1.0e-81 307.8 235 58.7
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 3.0e-81 306.2 305 54.8
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 3.9e-81 305.8 251 57.4
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 4.3e-80 302.4 240 65.8
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.6e-79 300.4 255 55.7
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 2.8e-79 299.7 250 59.6
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 8.1e-79 298.1 251 57.4
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 3.1e-78 296.2 308 54.5
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 5.2e-78 295.4 336 53.0
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 5.2e-78 295.4 252 58.3
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 1.1e-75 287.7 239 60.3
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 2.5e-72 276.6 256 57.8
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 3.2e-67 259.6 254 53.1
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 9.3e-67 258.1 241 54.8
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 1.6e-66 257.3 189 66.1
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 3.9e-65 252.7 202 57.4
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 2.1e-63 246.9 179 65.4
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 6.2e-63 245.4 322 47.5
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 1.4e-62 244.2 251 53.8
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 3.1e-62 243.0 286 45.1
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 2.1e-58 230.3 304 47.7
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.8e-55 219.9 269 48.7
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 2.0e-53 213.8 180 61.1
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 2.6e-53 213.4 212 53.8
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 1.6e-50 204.1 175 58.3
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 1.1e-48 198.0 182 55.5
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 7.6e-45 185.3 300 37.3
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 8.5e-44 181.8 137 59.1
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 2.7e-42 176.8 273 42.5
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 2.2e-36 157.1 114 62.3
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 6.1e-34 149.1 152 53.9
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 4.4e-32 142.9 103 67.0
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 1.3e-31 141.4 285 37.2
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 4.8e-31 139.4 100 66.0
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 1.7e-28 131.0 126 53.2
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 6.1e-26 122.5 128 52.3
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 8.8e-25 118.6 72 76.4
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 5.5e-19 99.4 58 81.0
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 2.1e-18 97.4 85 61.2
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 3.7e-15 86.7 57 71.9
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 8.2e-15 85.5 93 49.5
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 2.4e-14 84.0 81 50.6
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 7.2e-11 72.4 71 46.5


User provided reference genes

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