Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 1.2e-124 449.9 227 100.0
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.8e-109 399.4 225 88.0
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 2.9e-107 392.1 224 86.2
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 3.7e-107 391.7 227 85.5
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 8.3e-107 390.6 227 86.8
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 4.6e-105 384.8 223 86.1
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 1.3e-104 383.3 224 84.8
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 2.3e-104 382.5 212 87.7
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 3.0e-104 382.1 228 83.3
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 6.6e-104 380.9 212 88.2
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 8.6e-104 380.6 228 82.9
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.9e-103 379.4 227 82.4
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 5.6e-103 377.9 212 86.8
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 9.6e-103 377.1 220 85.9
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.6e-102 376.3 223 86.1
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 3.6e-102 375.2 230 80.9
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 3.6e-102 375.2 230 80.9
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 4.7e-102 374.8 230 81.7
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.4e-101 373.2 223 83.9
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 1.8e-101 372.9 223 84.3
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.8e-101 372.9 224 83.9
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 3.1e-101 372.1 217 85.3
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 4.0e-101 371.7 224 83.9
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 5.2e-101 371.3 221 82.4
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 5.2e-101 371.3 223 83.4
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 8.9e-101 370.5 223 83.0
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 1.2e-100 370.2 218 84.4
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.2e-100 370.2 222 83.8
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 1.5e-100 369.8 223 84.3
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 3.4e-100 368.6 220 82.3
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 7.6e-100 367.5 223 82.5
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 7.6e-100 367.5 220 81.8
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.7e-99 366.3 221 82.8
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.2e-99 365.9 221 82.8
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.2e-99 365.9 221 82.8
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 3.8e-99 365.2 219 81.3
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 6.4e-99 364.4 219 81.3
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.4e-98 363.2 218 83.0
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 2.4e-98 362.5 220 82.7
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 3.2e-98 362.1 216 81.5
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 4.2e-98 361.7 212 84.4
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 5.4e-98 361.3 223 83.4
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 9.3e-98 360.5 216 83.3
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 9.3e-98 360.5 227 78.0
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.6e-97 359.8 219 79.5
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 2.7e-97 359.0 220 82.3
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.6e-97 358.2 258 72.5
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 6.0e-97 357.8 220 81.8
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 6.0e-97 357.8 212 82.5
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 6.0e-97 357.8 218 81.2
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 1.0e-96 357.1 224 80.8
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.3e-96 356.7 214 84.1
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.7e-96 356.3 220 81.4
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 5.1e-96 354.8 226 79.6
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 7.3e-95 350.9 265 69.8
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 9.6e-95 350.5 233 76.4
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.3e-94 350.1 220 77.3
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 2.1e-94 349.4 218 79.8
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 6.2e-94 347.8 223 77.6
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.1e-93 347.1 215 80.5
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 1.8e-93 346.3 224 77.2
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 4.0e-93 345.1 223 77.1
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 4.0e-93 345.1 221 75.1
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 5.3e-93 344.7 220 77.3
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 6.9e-93 344.4 223 76.2
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 6.9e-93 344.4 223 76.2
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 6.9e-93 344.4 227 76.2
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 6.9e-93 344.4 220 76.4
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 9.0e-93 344.0 220 76.8
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 1.2e-92 343.6 220 76.8
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.2e-92 343.6 218 78.4
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 2.0e-92 342.8 223 76.2
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 2.6e-92 342.4 219 78.5
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 5.8e-92 341.3 220 75.9
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 5.8e-92 341.3 220 75.0
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 5.8e-92 341.3 221 77.4
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 5.8e-92 341.3 220 75.9
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 2.2e-91 339.3 220 75.5
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.9e-91 338.2 220 75.0
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.9e-90 336.3 220 74.5
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 1.9e-90 336.3 218 76.1
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 3.5e-89 332.0 220 75.0
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 4.6e-89 331.6 224 74.1
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 8.7e-88 327.4 212 77.8
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 2.5e-87 325.9 223 76.7
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.1e-85 320.5 220 70.9
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.1e-85 320.5 224 70.1
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.1e-85 320.5 220 71.4
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.4e-85 320.1 223 73.1
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.8e-85 319.7 189 84.7
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 4.0e-85 318.5 222 72.1
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.2e-84 317.0 220 74.1
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.5e-84 316.6 268 62.3
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 2.0e-84 316.2 210 72.4
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.6e-84 315.8 222 70.3
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 2.6e-84 315.8 220 71.8
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 3.4e-84 315.5 220 70.0
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 3.4e-84 315.5 220 70.0
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 5.8e-84 314.7 220 69.5
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 5.8e-84 314.7 220 71.4
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 5.8e-84 314.7 220 71.4
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 7.6e-84 314.3 220 69.5
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 9.9e-84 313.9 220 69.5
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 1.7e-83 313.2 220 69.1
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 2.2e-83 312.8 220 75.0
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 8.4e-83 310.8 225 68.0
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 7.4e-79 297.7 213 69.0
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 9.6e-79 297.4 214 67.8
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.1e-77 293.9 217 67.7
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 5.3e-77 291.6 213 66.7
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.8e-76 288.1 213 64.3
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 3.8e-75 285.4 177 80.2
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 4.9e-75 285.0 213 65.3
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 1.1e-74 283.9 215 65.6
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.8e-70 269.2 180 71.1
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.9e-67 259.2 218 61.5
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.5e-63 246.1 141 85.8
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 5.1e-56 221.9 134 81.3
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 1.3e-54 217.2 132 83.3
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 6.3e-54 214.9 127 83.5
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 9.1e-53 211.1 229 48.9
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.0e-52 209.9 123 82.9
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.1e-50 204.1 121 82.6
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 5.1e-48 195.3 155 66.5
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 4.7e-41 172.2 124 66.1
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 1.5e-39 167.2 130 67.7
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 5.7e-39 165.2 92 90.2
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.3e-38 164.1 115 70.4
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.1e-37 159.1 95 83.2
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.2e-36 157.5 107 71.0
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 6.8e-32 141.7 202 42.1
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.8e-30 135.6 91 70.3
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 6.3e-30 135.2 78 82.1
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.1e-29 134.4 166 44.0
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.2e-28 131.0 91 70.3
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 2.9e-27 126.3 181 39.8
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 8.5e-27 124.8 93 68.8
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.5e-26 124.0 218 34.4
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.9e-26 123.6 189 36.5
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 4.2e-26 122.5 189 36.0
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.7e-25 119.8 202 40.1
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 5.2e-24 115.5 73 78.1
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 2.2e-22 110.2 195 36.9
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.8e-21 107.1 88 62.5
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 1.8e-21 107.1 65 75.4
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 3.1e-21 106.3 216 32.9
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 3.1e-21 106.3 71 76.1
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 3.5e-20 102.8 83 65.1
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.3e-19 100.1 187 35.8
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 2.9e-19 99.8 59 81.4
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.9e-18 97.1 170 32.4
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.5e-18 96.7 59 74.6
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 7.2e-18 95.1 63 74.6
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.6e-17 94.0 58 77.6
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 2.1e-17 93.6 95 56.8
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 4.0e-16 89.4 70 62.9
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 8.9e-16 88.2 59 74.6
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 3.7e-14 82.8 68 61.8
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.1e-13 81.3 50 78.0
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 5.0e-11 72.4 91 48.4
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 6.6e-11 72.0 57 64.9
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 3.3e-10 69.7 66 57.6
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 5.6e-10 68.9 68 52.9
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 9.5e-10 68.2 65 53.8
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 1.2e-09 67.8 64 54.7
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 2.8e-09 66.6 59 57.6
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 1.0e-08 64.7 57 57.9
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 3.1e-08 63.2 39 79.5
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 7.5e-07 58.5 48 60.4


User provided reference genes

Program Settings