Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A814T59 Lonicera japonica HOM05D001550 ORTHO05D001611 9.2e-173 610.1 313 100.0
Lj6C673T5 Lonicera japonica HOM05D001550 ORTHO05D001611 2.5e-45 186.8 395 38.5
Dinv38304 Davidia involucrata HOM05D001550 ORTHO05D001611 1.9e-40 170.6 234 47.9
CSS0012470 Camellia sinensis var. sinensis HOM05D001550 ORTHO05D001611 5.3e-35 152.5 295 39.7
Actinidia01463 Actinidia chinensis HOM05D001550 ORTHO05D001611 2.6e-34 150.2 267 40.1
vmacro08125 Vaccinium macrocarpon HOM05D001550 ORTHO05D001611 3.4e-34 149.8 410 31.2
Rhsim04G0219600 Rhododendron simsii HOM05D001550 ORTHO05D001611 5.6e-29 132.5 273 38.8
Haze_01233 Corylus avellana HOM05D001550 ORTHO05D001611 1.6e-28 131.0 232 43.1
GSVIVG01017765001 Vitis vinifera HOM05D001550 ORTHO05D001611 3.1e-27 126.7 247 38.1
QL06p008333 Quercus lobata HOM05D001550 ORTHO05D001611 5.8e-26 122.5 233 39.9
Dinv44398 Davidia involucrata HOM05D001550 ORTHO05D001611 3.2e-24 116.7 285 32.6
DCAR_024560 Daucus carota HOM05D001550 ORTHO05D001611 1.2e-23 114.8 392 30.1
CiPaw.01G150400 Carya illinoinensis HOM05D001550 ORTHO05D001611 2.1e-23 114.0 222 38.3
Duzib052G0087 Durio zibethinus HOM05D001550 ORTHO05D001611 3.5e-23 113.2 238 39.9
Lalb_Chr15g0083591 Lupinus albus HOM05D001550 ORTHO05D001611 4.6e-23 112.8 224 35.7
MD16G1172200 Malus domestica HOM05D001550 ORTHO05D001611 4.6e-23 112.8 234 39.3
Prupe.1G139000 Prunus persica HOM05D001550 ORTHO05D001611 7.9e-23 112.1 191 39.3
Duzib151G0932 Durio zibethinus HOM05D001550 ORTHO05D001611 2.3e-22 110.5 230 40.4
Nitab4.5_0004537g0020 Nicotiana tabacum HOM05D001550 ORTHO05D001611 3.9e-22 109.8 392 29.8
Duzib212G0661 Durio zibethinus HOM05D001550 ORTHO05D001611 1.5e-21 107.8 230 40.0
Thecc.04G282200 Theobroma cacao HOM05D001550 ORTHO05D001611 1.9e-21 107.5 230 38.7
Lalb_Chr20g0114461 Lupinus albus HOM05D001550 ORTHO05D001611 3.3e-21 106.7 229 36.2
Lalb_Chr18g0051791 Lupinus albus HOM05D001550 ORTHO05D001611 5.7e-21 105.9 220 37.3
TAR362G0978 Trochodendron aralioides HOM05D001550 ORTHO05D001611 7.4e-21 105.5 394 30.5
Ciclev10004133m.g Citrus clementina HOM05D001550 ORTHO05D001611 9.7e-21 105.1 212 39.2
Gohir.A10G162800 Gossypium hirsutum HOM05D001550 ORTHO05D001611 2.2e-20 104.0 220 39.1
Gohir.D10G169200 Gossypium hirsutum HOM05D001550 ORTHO05D001611 2.8e-20 103.6 220 39.1
Gohir.D02G053700 Gossypium hirsutum HOM05D001550 ORTHO05D001611 3.7e-20 103.2 230 39.1
Gorai.005G059300 Gossypium raimondii HOM05D001550 ORTHO05D001611 3.7e-20 103.2 230 39.1
Gohir.A02G048400 Gossypium hirsutum HOM05D001550 ORTHO05D001611 6.3e-20 102.4 230 39.1
Peaxi162Scf00386g00034 Petunia axillaris HOM05D001550 ORTHO05D001611 6.3e-20 102.4 369 30.6
Oeu021108.1 Olea europaea HOM05D001550 ORTHO05D001611 1.1e-19 101.7 197 39.1
Solyc01g067600.3 Solanum lycopersicum HOM05D001550 ORTHO05D001611 1.1e-19 101.7 198 37.9
Sopen01g029560 Solanum pennellii HOM05D001550 ORTHO05D001611 1.1e-19 101.7 198 37.9
Nitab4.5_0000784g0050 Nicotiana tabacum HOM05D001550 ORTHO05D001611 2.4e-19 100.5 387 28.4
Nn4g25933 Nelumbo nucifera HOM05D001550 ORTHO05D001611 4.1e-19 99.8 206 36.4
CAN.G223.17 Capsicum annuum HOM05D001550 ORTHO05D001611 1.2e-18 98.2 395 28.9
Atru.chr4.2803 Acer truncatum HOM05D001550 ORTHO05D001611 2.0e-18 97.4 175 38.3
FAN22G2038 Fragaria x ananassa HOM05D001550 ORTHO05D001611 2.0e-18 97.4 203 37.9
Cc03_g02050 Coffea canephora HOM05D001550 ORTHO05D001611 2.6e-18 97.1 291 30.6
Nn3g21383 Nelumbo nucifera HOM05D001550 ORTHO05D001611 2.6e-18 97.1 187 38.5
RcHm_v2.0_Chr4g0421671 Rosa chinensis HOM05D001550 ORTHO05D001611 3.4e-18 96.7 342 27.5
Eucgr.H03883 Eucalyptus grandis HOM05D001550 ORTHO05D001611 4.5e-18 96.3 210 37.6
FAN17G2495 Fragaria x ananassa HOM05D001550 ORTHO05D001611 1.0e-17 95.1 203 37.4
TAR633G2809 Trochodendron aralioides HOM05D001550 ORTHO05D001611 1.7e-17 94.4 234 37.2
Ca_02419_v3 Cicer arietinum L. HOM05D001550 ORTHO05D001611 2.9e-17 93.6 206 34.5
FAN07G1583 Fragaria x ananassa HOM05D001550 ORTHO05D001611 3.8e-17 93.2 203 37.4
MD13G1170600 Malus domestica HOM05D001550 ORTHO05D001611 3.8e-17 93.2 233 36.5
Lj6g0002294 Lotus japonicus HOM05D001550 ORTHO05D001611 8.5e-17 92.0 206 34.0
Gorai.011G188700 Gossypium raimondii HOM05D001550 ORTHO05D001611 1.4e-16 91.3 246 35.8
Glyma.07G249600 Glycine max HOM05D001550 ORTHO05D001611 4.2e-16 89.7 237 35.0
TWI09G0200 Tripterygium wilfordii HOM05D001550 ORTHO05D001611 7.2e-16 89.0 199 33.7
Manes.03G193000 Manihot esculenta HOM05D001550 ORTHO05D001611 2.7e-15 87.0 260 35.4
TPR.G21916 Trifolium pratense HOM05D001550 ORTHO05D001611 2.7e-15 87.0 207 32.4
VMungo1215G2563 Vigna mungo HOM05D001550 ORTHO05D001611 2.7e-15 87.0 235 34.0
FvH4_4g17691 Fragaria vesca HOM05D001550 ORTHO05D001611 6.1e-15 85.9 169 36.7
TAR636G3189 Trochodendron aralioides HOM05D001550 ORTHO05D001611 1.4e-14 84.7 233 34.8
Aqoxy2G03050 Aquilegia oxysepala HOM05D001550 ORTHO05D001611 2.3e-14 84.0 198 34.8
Prupe.8G255400 Prunus persica HOM05D001550 ORTHO05D001611 2.3e-14 84.0 355 25.9
Phvul.009G246100 Phaseolus vulgaris HOM05D001550 ORTHO05D001611 3.0e-14 83.6 186 35.5
Lj4g0024545 Lotus japonicus HOM05D001550 ORTHO05D001611 3.9e-14 83.2 204 33.3
Glyma.17G024800 Glycine max HOM05D001550 ORTHO05D001611 6.7e-14 82.4 199 36.2
Glyma.15G154200 Glycine max HOM05D001550 ORTHO05D001611 8.8e-14 82.0 206 32.0
SalBow2G2718 Salvia bowleyana HOM05D001550 ORTHO05D001611 1.1e-13 81.6 315 32.1
Glyma.09G046300 Glycine max HOM05D001550 ORTHO05D001611 1.5e-13 81.3 206 31.6
VMungo1309G1422 Vigna mungo HOM05D001550 ORTHO05D001611 1.5e-13 81.3 200 35.0
CsaV3_6G017320 Cucumis sativus L. HOM05D001550 ORTHO05D001611 2.5e-13 80.5 273 31.9
PGR004G2052 Punica granatum HOM05D001550 ORTHO05D001611 2.5e-13 80.5 208 32.7
Lsat_1_v5_gn_5_49141 Lactuca sativa HOM05D001550 ORTHO05D001611 3.3e-13 80.1 229 33.2
CSS0040603 Camellia sinensis var. sinensis HOM05D001550 ORTHO05D001611 4.3e-13 79.7 170 38.2
Medtr2g437350 Medicago truncatula HOM05D001550 ORTHO05D001611 5.7e-13 79.3 189 32.3
PSO170G0358 Papaver somniferum HOM05D001550 ORTHO05D001611 5.7e-13 79.3 232 28.9
PSO210G1805 Papaver somniferum HOM05D001550 ORTHO05D001611 9.7e-13 78.6 166 38.6
ATR0706G291 Amborella trichopoda HOM05D001550 ORTHO05D001611 1.3e-12 78.2 204 36.8
ClCG06G005270 Citrullus lanatus HOM05D001550 ORTHO05D001611 1.3e-12 78.2 149 41.6
CiPaw.08G098900 Carya illinoinensis HOM05D001550 ORTHO05D001611 1.7e-12 77.8 170 34.7
MD03G1282000 Malus domestica HOM05D001550 ORTHO05D001611 1.7e-12 77.8 311 26.0
Gohir.A11G116500 Gossypium hirsutum HOM05D001550 ORTHO05D001611 2.2e-12 77.4 321 29.3
Manes.05G066000 Manihot esculenta HOM05D001550 ORTHO05D001611 2.2e-12 77.4 171 34.5
FAN27G0147 Fragaria x ananassa HOM05D001550 ORTHO05D001611 3.7e-12 76.6 351 25.9
CiPaw.02G084400 Carya illinoinensis HOM05D001550 ORTHO05D001611 4.8e-12 76.3 119 40.3
MELO3C021346.2 Cucumis melo HOM05D001550 ORTHO05D001611 6.3e-12 75.9 227 33.9
TWI23G1006 Tripterygium wilfordii HOM05D001550 ORTHO05D001611 8.2e-12 75.5 201 32.8
PSO210G3508 Papaver somniferum HOM05D001550 ORTHO05D001611 1.4e-11 74.7 236 29.2
SalBow3G2858 Salvia bowleyana HOM05D001550 ORTHO05D001611 1.4e-11 74.7 200 38.0
MSTRG.21610 Avicennia marina HOM05D001550 ORTHO05D001611 2.4e-11 73.9 189 37.0
FAN15G0221 Fragaria x ananassa HOM05D001550 ORTHO05D001611 2.4e-11 73.9 351 25.4
GSVIVG01010964001 Vitis vinifera HOM05D001550 ORTHO05D001611 2.4e-11 73.9 199 35.2
unitig_0.g1182 Utricularia gibba HOM05D001550 ORTHO05D001611 3.1e-11 73.6 184 33.7
Atru.chr5.1234 Acer truncatum HOM05D001550 ORTHO05D001611 4.1e-11 73.2 174 37.4
Phvul.003G103100 Phaseolus vulgaris HOM05D001550 ORTHO05D001611 4.1e-11 73.2 222 32.0
Psat1g152560 Pisum sativum HOM05D001550 ORTHO05D001611 5.3e-11 72.8 201 32.3
QL12p030643 Quercus lobata HOM05D001550 ORTHO05D001611 5.3e-11 72.8 181 32.6
MD11G1301800 Malus domestica HOM05D001550 ORTHO05D001611 6.9e-11 72.4 346 25.4
Potri.002G209409 Populus trichocarpa HOM05D001550 ORTHO05D001611 6.9e-11 72.4 200 31.0
Cfa005989 Carpinus fangiana HOM05D001550 ORTHO05D001611 9.1e-11 72.0 161 37.9
Dinv30777 Davidia involucrata HOM05D001550 ORTHO05D001611 9.1e-11 72.0 211 34.1
Sed0018217 Sechium edule HOM05D001550 ORTHO05D001611 9.1e-11 72.0 182 33.5
FvH4_2g25070 Fragaria vesca HOM05D001550 ORTHO05D001611 2.0e-10 70.9 351 24.5
Sabra02G0150800 Salix brachista HOM05D001550 ORTHO05D001611 2.0e-10 70.9 135 37.8
TWI14G1206 Tripterygium wilfordii HOM05D001550 ORTHO05D001611 2.6e-10 70.5 201 33.8
Cpa.g.sc441.5 Carica papaya HOM05D001550 ORTHO05D001611 3.4e-10 70.1 148 37.2
SGA_v2.0_scaffold1G00389 Striga asiatica HOM05D001550 ORTHO05D001611 3.4e-10 70.1 207 33.3
Duzib138G1650 Durio zibethinus HOM05D001550 ORTHO05D001611 4.5e-10 69.7 188 33.0
Duzib133G1221 Durio zibethinus HOM05D001550 ORTHO05D001611 5.9e-10 69.3 306 29.4
Gorai.004G053100 Gossypium raimondii HOM05D001550 ORTHO05D001611 5.9e-10 69.3 158 39.2
QL03p007439 Quercus lobata HOM05D001550 ORTHO05D001611 7.7e-10 68.9 169 37.9
QL03p007656 Quercus lobata HOM05D001550 ORTHO05D001611 7.7e-10 68.9 169 37.9
Manes.01G215600 Manihot esculenta HOM05D001550 ORTHO05D001611 1.0e-09 68.6 184 31.5
MSTRG.10083 Avicennia marina HOM05D001550 ORTHO05D001611 1.3e-09 68.2 294 29.6
Migut.D00180 Erythranthe guttata HOM05D001550 ORTHO05D001611 1.3e-09 68.2 194 34.5
Gohir.A08G043300 Gossypium hirsutum HOM05D001550 ORTHO05D001611 1.3e-09 68.2 103 46.6
PSO832G3901 Papaver somniferum HOM05D001550 ORTHO05D001611 1.3e-09 68.2 276 30.1
CSS0005237 Camellia sinensis var. sinensis HOM05D001550 ORTHO05D001611 1.7e-09 67.8 240 29.6
Gorai.008G009600 Gossypium raimondii HOM05D001550 ORTHO05D001611 1.7e-09 67.8 304 28.0
Oeu057580.1 Olea europaea HOM05D001550 ORTHO05D001611 1.7e-09 67.8 137 40.9
Os07g0669800 Oryza sativa ssp. japonica HOM05D001550 ORTHO05D001611 2.2e-09 67.4 200 33.5
Dinv19735 Davidia involucrata HOM05D001550 ORTHO05D001611 2.9e-09 67.0 218 31.7
Gohir.D11G121600 Gossypium hirsutum HOM05D001550 ORTHO05D001611 2.9e-09 67.0 332 27.1
Gorai.007G130300 Gossypium raimondii HOM05D001550 ORTHO05D001611 2.9e-09 67.0 331 27.2
MSTRG.3931 Avicennia marina HOM05D001550 ORTHO05D001611 3.8e-09 66.6 308 28.6
CiPaw.07G103400 Carya illinoinensis HOM05D001550 ORTHO05D001611 3.8e-09 66.6 211 32.7
Peaxi162Scf00067g01920 Petunia axillaris HOM05D001550 ORTHO05D001611 3.8e-09 66.6 159 35.8
RcHm_v2.0_Chr6g0293091 Rosa chinensis HOM05D001550 ORTHO05D001611 3.8e-09 66.6 184 29.3
Gohir.A08G073675 Gossypium hirsutum HOM05D001550 ORTHO05D001611 5.0e-09 66.2 181 34.8
Gohir.D12G009600 Gossypium hirsutum HOM05D001550 ORTHO05D001611 5.0e-09 66.2 298 27.5
HanXRQChr13g0409851 Helianthus annuus HOM05D001550 ORTHO05D001611 5.0e-09 66.2 169 33.7
arahy.Tifrunner.gnm1.ann1.338AY0 Arachis hypogaea HOM05D001550 ORTHO05D001611 6.5e-09 65.9 172 33.7
Rhsim13G0015300 Rhododendron simsii HOM05D001550 ORTHO05D001611 6.5e-09 65.9 315 28.6
FAN24G2366 Fragaria x ananassa HOM05D001550 ORTHO05D001611 8.5e-09 65.5 351 23.9
Potri.014G132900 Populus trichocarpa HOM05D001550 ORTHO05D001611 1.1e-08 65.1 225 31.6
arahy.Tifrunner.gnm1.ann1.1RFZ00 Arachis hypogaea HOM05D001550 ORTHO05D001611 1.4e-08 64.7 172 33.1
Gorai.004G086900 Gossypium raimondii HOM05D001550 ORTHO05D001611 1.4e-08 64.7 324 27.5
HanXRQChr03g0079941 Helianthus annuus HOM05D001550 ORTHO05D001611 1.4e-08 64.7 214 29.9
A07p26130 Brassica napus HOM05D001550 ORTHO05D001611 1.9e-08 64.3 254 26.4
BraA07t30259Z Brassica rapa HOM05D001550 ORTHO05D001611 1.9e-08 64.3 254 26.4
Haze_04174 Corylus avellana HOM05D001550 ORTHO05D001611 1.9e-08 64.3 169 35.5
Sed0016218 Sechium edule HOM05D001550 ORTHO05D001611 1.9e-08 64.3 165 32.7
Sc09g0003100 Simmondsia chinensis HOM05D001550 ORTHO05D001611 1.9e-08 64.3 169 34.9
Gohir.A12G009600 Gossypium hirsutum HOM05D001550 ORTHO05D001611 2.5e-08 63.9 309 27.8
Gohir.D08G083100 Gossypium hirsutum HOM05D001550 ORTHO05D001611 2.5e-08 63.9 324 27.2
Actinidia21067 Actinidia chinensis HOM05D001550 ORTHO05D001611 3.2e-08 63.5 173 32.9
Ciclev10018467m.g Citrus clementina HOM05D001550 ORTHO05D001611 3.2e-08 63.5 151 34.4
Oeu008493.2 Olea europaea HOM05D001550 ORTHO05D001611 4.2e-08 63.2 94 42.6
Sed0012078 Sechium edule HOM05D001550 ORTHO05D001611 4.2e-08 63.2 168 35.7
Nitab4.5_0001697g0130 Nicotiana tabacum HOM05D001550 ORTHO05D001611 5.5e-08 62.8 146 34.9
Sc19g0005060 Simmondsia chinensis HOM05D001550 ORTHO05D001611 5.5e-08 62.8 261 28.0
vmacro02489 Vaccinium macrocarpon HOM05D001550 ORTHO05D001611 5.5e-08 62.8 343 26.2
Actinidia40252 Actinidia chinensis HOM05D001550 ORTHO05D001611 7.2e-08 62.4 171 30.4
THA.LOC104802158 Tarenaya hassleriana HOM05D001550 ORTHO05D001611 7.2e-08 62.4 294 27.2
C06p28440 Brassica napus HOM05D001550 ORTHO05D001611 9.4e-08 62.0 254 26.0
Thecc.01G293700 Theobroma cacao HOM05D001550 ORTHO05D001611 9.4e-08 62.0 298 26.2
unitig_61.g26312 Utricularia gibba HOM05D001550 ORTHO05D001611 9.4e-08 62.0 236 29.2
COL.COLO4_08001 Corchorus olitorius HOM05D001550 ORTHO05D001611 1.2e-07 61.6 230 29.6
Nitab4.5_0001447g0070 Nicotiana tabacum HOM05D001550 ORTHO05D001611 1.6e-07 61.2 146 34.9
Cc01_g20490 Coffea canephora HOM05D001550 ORTHO05D001611 2.1e-07 60.8 215 31.2
Lalb_Chr15g0078681 Lupinus albus HOM05D001550 ORTHO05D001611 2.1e-07 60.8 164 31.1
Lalb_Chr21g0306771 Lupinus albus HOM05D001550 ORTHO05D001611 2.1e-07 60.8 170 32.9
Potri.005G028700 Populus trichocarpa HOM05D001550 ORTHO05D001611 2.1e-07 60.8 193 33.2
CAN.G1777.3 Capsicum annuum HOM05D001550 ORTHO05D001611 2.7e-07 60.5 216 29.6
Eucgr.K03451 Eucalyptus grandis HOM05D001550 ORTHO05D001611 2.7e-07 60.5 193 31.6
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 2.7e-07 60.5 212 32.5
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 4.7e-07 59.7 173 33.5
Lsat_1_v5_gn_8_54460 Lactuca sativa HOM05D001550 ORTHO05D001611 4.7e-07 59.7 102 44.1
Actinidia00675 Actinidia chinensis HOM05D001550 ORTHO05D001611 7.9e-07 58.9 170 31.8
BcaC08g45244 Brassica carinata HOM05D001550 ORTHO05D001611 7.9e-07 58.9 254 25.6
BolC6t38013H Brassica oleracea HOM05D001550 ORTHO05D001611 7.9e-07 58.9 254 25.6
AL5G45670 Arabidopsis lyrata HOM05D001550 ORTHO05D001611 1.0e-06 58.5 213 28.6
FAN20G2465 Fragaria x ananassa HOM05D001550 ORTHO05D001611 1.0e-06 58.5 203 29.1
HanXRQChr04g0118131 Helianthus annuus HOM05D001550 ORTHO05D001611 1.0e-06 58.5 272 29.8
MBI19_g23996_MAGBIO Magnolia biondii HOM05D001550 ORTHO05D001611 1.4e-06 58.2 246 29.3
Oeu030974.2 Olea europaea HOM05D001550 ORTHO05D001611 1.4e-06 58.2 141 36.9
Zm00001eb111100 Zea mays HOM05D001550 ORTHO05D001611 1.4e-06 58.2 109 43.1
CDE05G2265 Ceratophyllum demersum HOM05D001550 ORTHO05D001611 1.8e-06 57.8 174 32.8
AUR62033198 Chenopodium quinoa HOM05D001550 ORTHO05D001611 1.8e-06 57.8 184 32.6
Sabra13G0022700 Salix brachista HOM05D001550 ORTHO05D001611 1.8e-06 57.8 205 30.7
Zm00001eb330260 Zea mays HOM05D001550 ORTHO05D001611 1.8e-06 57.8 109 43.1
arahy.Tifrunner.gnm1.ann1.3KJA5W Arachis hypogaea HOM05D001550 ORTHO05D001611 2.3e-06 57.4 177 31.6
ECA247G2733 Erigeron canadensis HOM05D001550 ORTHO05D001611 2.3e-06 57.4 186 32.3
Phvul.001G204500 Phaseolus vulgaris HOM05D001550 ORTHO05D001611 2.3e-06 57.4 229 29.3
DCAR_002805 Daucus carota HOM05D001550 ORTHO05D001611 3.0e-06 57.0 201 26.9
Lj1g0021429 Lotus japonicus HOM05D001550 ORTHO05D001611 3.9e-06 56.6 167 34.1
Sc05g0004350 Simmondsia chinensis HOM05D001550 ORTHO05D001611 3.9e-06 56.6 176 31.2
Aa31LG10G16680 Aethionema arabicum HOM05D001550 ORTHO05D001611 5.1e-06 56.2 152 32.2
Lsat_1_v5_gn_9_2161 Lactuca sativa HOM05D001550 ORTHO05D001611 5.1e-06 56.2 126 34.9
Solyc06g008720.4 Solanum lycopersicum HOM05D001550 ORTHO05D001611 5.1e-06 56.2 179 29.6


User provided reference genes

Program Settings