Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 5.2e-153 544.3 259 100.0
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 2.9e-95 352.4 255 65.9
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 1.5e-91 340.1 245 66.9
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 6.9e-89 331.3 250 62.8
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 9.0e-89 330.9 253 64.8
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 1.7e-87 326.6 259 59.8
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 3.8e-87 325.5 255 60.0
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 4.2e-86 322.0 246 62.6
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 2.7e-85 319.3 255 61.6
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 3.5e-85 318.9 228 64.0
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 1.0e-84 317.4 256 59.8
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 3.0e-84 315.8 255 60.4
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 1.5e-83 313.5 255 61.2
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 4.3e-83 312.0 252 59.9
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 4.0e-81 305.4 251 58.2
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 2.6e-80 302.8 254 57.5
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 1.3e-79 300.4 256 55.9
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 2.4e-78 296.2 252 57.9
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 1.2e-77 293.9 254 57.1
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 3.5e-77 292.4 256 56.2
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 4.6e-77 292.0 264 54.5
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 6.0e-77 291.6 254 56.3
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 1.8e-76 290.0 254 55.5
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 8.7e-76 287.7 250 57.2
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 1.1e-75 287.3 254 55.1
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 1.5e-75 287.0 255 56.1
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 9.6e-75 284.3 254 53.5
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 1.3e-74 283.9 249 54.6
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 1.3e-74 283.9 254 54.7
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 2.1e-74 283.1 247 57.1
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 2.1e-74 283.1 252 56.3
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 4.8e-74 282.0 251 55.4
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 6.2e-74 281.6 254 56.7
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 2.4e-73 279.6 246 55.3
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 9.0e-73 277.7 245 57.1
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 1.2e-72 277.3 231 55.4
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 7.6e-72 274.6 241 56.8
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 7.6e-72 274.6 251 55.0
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.3e-71 273.9 248 53.2
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 2.2e-71 273.1 260 51.5
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 2.2e-71 273.1 241 56.4
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 3.8e-71 272.3 245 53.5
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 3.2e-70 269.2 250 52.0
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 1.3e-68 263.8 257 51.8
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 1.1e-67 260.8 251 51.4
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 2.5e-67 259.6 250 50.0
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 2.5e-67 259.6 230 55.2
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 4.3e-67 258.8 255 54.5
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 5.6e-67 258.5 252 51.6
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 9.6e-67 257.7 251 49.8
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 1.6e-66 256.9 248 54.4
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 3.7e-66 255.8 251 48.6
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 6.2e-66 255.0 248 48.4
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 4.0e-65 252.3 244 52.0
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 4.0e-65 252.3 244 50.0
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 5.3e-65 251.9 252 50.8
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 5.3e-65 251.9 253 49.0
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 3.4e-64 249.2 247 50.6
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 7.6e-64 248.1 246 48.4
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 1.0e-63 247.7 246 48.4
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 1.7e-63 246.9 246 50.8
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 6.5e-63 245.0 251 47.4
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 1.1e-62 244.2 167 67.7
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 3.2e-62 242.7 262 49.2
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 4.2e-62 242.3 233 48.9
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 5.5e-62 241.9 244 50.4
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 7.1e-62 241.5 255 47.1
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 7.9e-61 238.0 253 46.6
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 1.5e-59 233.8 243 46.5
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 1.8e-57 226.9 242 48.3
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 1.8e-57 226.9 242 48.3
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 3.1e-57 226.1 251 47.0
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 5.3e-57 225.3 241 47.3
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 5.3e-57 225.3 241 47.7
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 5.3e-57 225.3 234 47.9
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 9.0e-57 224.6 250 45.6
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 1.2e-56 224.2 234 45.7
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 1.2e-56 224.2 240 47.9
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 1.5e-56 223.8 259 45.2
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 2.0e-56 223.4 250 45.6
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 2.6e-56 223.0 241 47.7
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 4.5e-56 222.2 242 48.3
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 1.3e-55 220.7 242 47.9
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 1.7e-55 220.3 241 48.1
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 1.9e-54 216.9 260 45.0
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 9.4e-54 214.5 175 56.6
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.1e-53 213.4 234 47.9
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 4.6e-53 212.2 158 65.8
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 6.1e-53 211.8 240 44.6
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 6.1e-53 211.8 170 57.6
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 6.3e-50 201.8 259 43.6
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 7.7e-48 194.9 172 54.7
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 1.7e-47 193.7 173 54.9
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 6.5e-47 191.8 234 41.0
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 1.1e-46 191.0 232 40.9
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 9.4e-46 188.0 240 47.9
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 6.1e-45 185.3 242 43.0
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 2.0e-43 180.3 237 42.6
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 2.6e-43 179.9 299 34.1
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 3.3e-43 179.5 299 33.8
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 4.2e-38 162.5 256 35.5
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.5e-35 154.1 154 50.6
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 2.6e-35 153.3 167 47.3
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 3.7e-34 149.4 157 47.8
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 8.2e-34 148.3 167 45.5
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 3.8e-31 139.4 150 44.7
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 6.5e-31 138.7 230 31.3
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 6.1e-29 132.1 100 62.0
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 4.8e-26 122.5 83 65.1
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 3.1e-25 119.8 118 49.2
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 3.5e-24 116.3 88 61.4
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 7.7e-24 115.2 158 44.9
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 3.6e-21 106.3 340 24.4
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 1.0e-20 104.8 115 45.2
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 1.5e-19 100.9 144 38.9
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 3.4e-19 99.8 111 50.5
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.7e-18 97.4 83 53.0
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 1.4e-17 94.4 90 51.1
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 9.1e-17 91.7 73 56.2
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 2.0e-16 90.5 67 58.2
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 1.3e-15 87.8 79 51.9


User provided reference genes

Program Settings