Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 1.1e-124 449.9 220 100.0
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 9.9e-105 383.6 222 83.8
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 4.2e-103 378.3 214 86.4
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 5.4e-103 377.9 212 87.3
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 1.6e-102 376.3 221 81.0
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 7.8e-102 374.0 213 86.4
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 1.3e-101 373.2 216 84.7
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 1.3e-101 373.2 216 81.9
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 1.7e-101 372.9 215 85.6
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 3.0e-101 372.1 215 84.2
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 6.6e-101 370.9 222 78.8
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 6.6e-101 370.9 222 78.8
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 8.7e-101 370.5 221 82.8
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 8.7e-101 370.5 219 81.3
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 1.1e-100 370.2 222 78.8
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 9.6e-100 367.1 222 77.9
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 2.8e-99 365.5 221 81.0
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 2.8e-99 365.5 213 84.0
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 6.2e-99 364.4 218 82.6
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 8.1e-99 364.0 219 79.0
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 1.1e-98 363.6 218 82.6
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 4.0e-98 361.7 212 82.5
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 5.3e-98 361.3 214 83.2
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 9.0e-98 360.5 216 80.6
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 9.0e-98 360.5 216 81.0
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 1.2e-97 360.1 214 80.8
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 2.0e-97 359.4 214 82.2
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 4.4e-97 358.2 215 81.9
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 5.8e-97 357.8 214 81.3
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 9.9e-97 357.1 214 82.2
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 9.9e-97 357.1 216 81.0
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 9.9e-97 357.1 216 81.0
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 9.9e-97 357.1 212 82.5
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 1.3e-96 356.7 216 81.5
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 1.3e-96 356.7 214 80.8
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 2.2e-96 355.9 218 80.3
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 2.2e-96 355.9 214 79.9
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 4.9e-96 354.8 216 79.6
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 6.4e-96 354.4 213 80.3
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 8.4e-96 354.0 214 81.3
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 1.1e-95 353.6 214 79.4
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 1.4e-95 353.2 222 75.7
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.4e-95 352.4 209 81.3
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 3.2e-95 352.1 214 79.0
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 4.2e-95 351.7 215 79.1
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 4.2e-95 351.7 215 79.5
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 5.4e-95 351.3 229 76.9
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 5.4e-95 351.3 214 78.5
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 5.4e-95 351.3 222 75.7
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 9.3e-95 350.5 219 76.7
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 9.3e-95 350.5 222 75.2
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 4.6e-94 348.2 216 78.7
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 1.0e-93 347.1 215 78.6
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 1.7e-93 346.3 213 78.9
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 1.7e-93 346.3 213 78.9
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 1.7e-93 346.3 214 78.5
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 2.3e-93 345.9 219 76.3
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 2.3e-93 345.9 218 74.8
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 6.6e-93 344.4 215 79.5
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 6.6e-93 344.4 214 80.8
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 1.9e-92 342.8 221 78.3
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 2.8e-91 339.0 214 77.1
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 6.2e-91 337.8 202 81.7
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 6.2e-91 337.8 220 75.0
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 8.1e-91 337.4 210 76.7
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 8.1e-91 337.4 216 75.5
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 8.1e-91 337.4 215 77.2
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 1.1e-90 337.0 216 75.0
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 3.1e-90 335.5 216 75.9
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 4.0e-90 335.1 216 76.4
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 1.2e-89 333.6 214 75.7
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 1.5e-89 333.2 216 76.4
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 1.5e-89 333.2 214 77.1
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 2.0e-89 332.8 212 76.9
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 2.0e-89 332.8 214 76.6
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 3.4e-89 332.0 215 77.2
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 5.8e-89 331.3 217 76.0
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 7.6e-89 330.9 218 76.1
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 1.3e-88 330.1 214 75.2
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 1.3e-88 330.1 216 75.0
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 1.3e-88 330.1 214 75.2
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 1.3e-88 330.1 214 75.2
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 2.9e-88 328.9 214 75.2
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 2.9e-88 328.9 214 75.2
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 2.4e-87 325.9 214 75.2
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 4.2e-87 325.1 216 74.5
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 1.6e-86 323.2 217 72.8
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 5.1e-85 318.2 201 79.1
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 8.7e-85 317.4 198 76.8
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 2.6e-81 305.8 210 70.0
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 4.9e-80 301.6 218 68.8
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 6.5e-80 301.2 203 70.9
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 2.5e-79 299.3 214 69.6
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 1.6e-78 296.6 218 70.2
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 2.7e-78 295.8 218 68.3
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 4.6e-78 295.0 216 69.4
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 3.3e-76 288.9 216 68.1
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 1.8e-74 283.1 184 70.1
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 7.6e-73 277.7 193 72.0
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 2.9e-72 275.8 194 65.5
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 5.5e-71 271.6 191 69.1
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 3.0e-69 265.8 188 71.3
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 5.1e-69 265.0 146 85.6
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 1.5e-68 263.5 150 84.7
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 1.1e-66 257.3 192 64.1
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 5.9e-65 251.5 260 54.6
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 5.9e-65 251.5 148 81.8
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 4.2e-63 245.4 150 78.7
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 2.8e-59 232.6 147 74.8
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 1.2e-54 217.2 167 59.3
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 5.9e-49 198.4 189 50.3
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.0e-45 185.7 100 88.0
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 2.2e-35 153.3 212 43.9
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 7.5e-28 128.3 66 89.4
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 3.1e-26 122.9 85 69.4
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 7.0e-26 121.7 94 63.8
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 1.5e-23 114.0 66 80.3
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 9.5e-23 111.3 87 60.9
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 2.8e-22 109.8 98 55.1
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 4.3e-15 85.9 67 61.2
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 3.1e-13 79.7 143 37.8
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 1.3e-08 64.3 148 27.7
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 1.7e-08 63.9 148 27.0
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 1.7e-08 63.9 148 27.0
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 3.9e-08 62.8 148 27.0
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 1.5e-07 60.8 150 28.7
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 1.9e-07 60.5 41 65.9
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 4.3e-07 59.3 148 26.4
MELO3C013239.2 Cucumis melo HOM05D000031 ORTHO05D000030 5.6e-07 58.9 32 78.1
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 7.3e-07 58.5 148 27.0
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 9.5e-07 58.2 110 31.8
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 9.5e-07 58.2 150 27.3
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 9.5e-07 58.2 148 27.0
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 9.5e-07 58.2 148 27.0
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.2e-06 57.8 148 26.4
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 1.6e-06 57.4 148 26.4
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 2.1e-06 57.0 157 26.1
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 2.1e-06 57.0 148 26.4
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 2.8e-06 56.6 148 27.0
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 3.6e-06 56.2 150 24.7
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 3.6e-06 56.2 150 24.7


User provided reference genes

Program Settings