Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 6.2e-157 557.4 271 100.0
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 5.3e-68 261.9 227 55.1
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 2.0e-67 260.0 235 56.2
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 2.0e-67 260.0 227 55.9
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 2.7e-67 259.6 225 56.0
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 5.9e-67 258.5 227 54.2
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 7.7e-67 258.1 227 55.5
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 7.7e-67 258.1 227 54.6
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 1.3e-66 257.3 227 55.1
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 1.7e-66 256.9 227 54.2
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 1.7e-66 256.9 227 54.6
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 2.2e-66 256.5 227 54.6
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 3.8e-66 255.8 227 54.2
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 8.5e-66 254.6 227 52.4
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.1e-65 254.2 227 55.1
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.1e-65 254.2 227 52.4
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 1.1e-65 254.2 230 53.0
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.9e-65 253.4 227 54.2
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 2.5e-65 253.1 230 52.2
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 2.5e-65 253.1 226 54.0
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 2.5e-65 253.1 227 53.3
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 5.5e-65 251.9 227 53.3
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 5.5e-65 251.9 227 52.4
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 5.5e-65 251.9 227 53.7
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 7.2e-65 251.5 227 55.5
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 7.2e-65 251.5 227 53.3
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 1.2e-64 250.8 230 51.3
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 1.6e-64 250.4 230 50.9
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 1.6e-64 250.4 230 51.3
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 1.6e-64 250.4 227 52.4
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 1.6e-64 250.4 226 53.1
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 2.1e-64 250.0 229 52.4
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 2.1e-64 250.0 226 53.1
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 2.7e-64 249.6 227 52.9
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 2.7e-64 249.6 227 52.9
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.7e-64 249.6 230 51.7
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.7e-64 249.6 227 52.0
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 2.7e-64 249.6 227 53.3
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.7e-64 249.6 227 52.0
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 3.6e-64 249.2 227 52.9
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 3.6e-64 249.2 225 53.3
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 4.7e-64 248.8 227 52.0
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 6.1e-64 248.4 231 52.4
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 6.1e-64 248.4 235 51.1
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.0e-63 247.7 227 52.4
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.0e-63 247.7 227 52.4
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.4e-63 247.3 227 51.1
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 1.8e-63 246.9 230 50.9
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 1.8e-63 246.9 230 50.9
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 1.8e-63 246.9 227 52.0
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 1.8e-63 246.9 228 52.2
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 1.8e-63 246.9 231 51.5
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 2.3e-63 246.5 230 50.9
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 2.3e-63 246.5 230 50.9
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 2.3e-63 246.5 230 50.9
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.3e-63 246.5 231 52.8
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 2.3e-63 246.5 227 52.0
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 2.3e-63 246.5 227 52.9
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.0e-63 246.1 227 51.1
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 4.0e-63 245.7 230 50.9
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 5.2e-63 245.4 230 51.7
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 5.2e-63 245.4 231 51.1
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 8.8e-63 244.6 231 52.8
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 1.2e-62 244.2 226 51.8
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 1.2e-62 244.2 227 53.3
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 1.5e-62 243.8 227 52.9
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 2.0e-62 243.4 231 51.1
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 4.4e-62 242.3 226 53.1
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 5.7e-62 241.9 236 51.3
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 9.8e-62 241.1 249 48.6
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 9.8e-62 241.1 232 50.0
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.3e-61 240.7 226 50.9
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 1.7e-61 240.4 229 51.5
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.2e-61 240.0 231 49.8
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 1.8e-60 236.9 228 49.6
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.8e-60 236.9 231 49.8
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 5.4e-60 235.3 230 49.6
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 7.0e-60 235.0 230 50.9
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 9.1e-60 234.6 231 48.9
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 1.6e-59 233.8 222 50.9
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 5.9e-59 231.9 232 50.9
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.3e-58 230.7 221 52.0
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 1.7e-58 230.3 228 49.6
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 2.9e-58 229.6 227 50.2
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 5.0e-58 228.8 217 51.2
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 2.1e-56 223.4 250 47.6
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.0e-55 221.1 239 46.4
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 2.6e-54 216.5 231 48.5
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 4.4e-54 215.7 257 45.1
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 9.8e-54 214.5 195 51.8
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 9.8e-54 214.5 275 42.9
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 9.2e-52 208.0 227 47.1
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 5.9e-51 205.3 252 43.7
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 2.0e-46 190.3 170 52.9
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 2.0e-46 190.3 230 43.5
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 8.3e-45 184.9 187 52.9
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 1.4e-44 184.1 261 38.7
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 2.4e-44 183.3 227 42.3
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 2.4e-44 183.3 178 50.6
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 7.0e-44 181.8 255 38.8
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 9.2e-44 181.4 268 38.1
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 3.3e-41 172.9 276 36.2
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 5.6e-41 172.2 255 36.1
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 6.2e-40 168.7 200 42.5
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 7.0e-36 155.2 124 57.3
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 1.4e-31 141.0 135 51.1
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 2.1e-27 127.1 98 61.2
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 6.0e-27 125.6 230 35.7
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 3.9e-26 122.9 98 58.2
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 3.9e-18 96.3 139 36.7
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 3.3e-17 93.2 187 32.6
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 3.3e-17 93.2 206 29.6
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.6e-17 92.4 82 54.9
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 4.7e-16 89.4 90 46.7
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.1e-15 88.2 81 49.4
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 9.0e-15 85.1 67 61.2
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 2.0e-14 84.0 101 46.5
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 7.1e-12 75.5 169 33.1
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 2.7e-11 73.6 55 54.5
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 3.9e-10 69.7 69 52.2
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 5.1e-10 69.3 60 51.7
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.9e-09 67.4 60 55.0
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 1.9e-09 67.4 66 47.0
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 8.1e-08 62.0 62 51.6


User provided reference genes

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