Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A789T23 Lonicera japonica HOM05D000264 ORTHO05D000152 1.7e-78 295.8 141 100.0
Lj3A718T89 Lonicera japonica HOM05D000264 ORTHO05D000152 1.4e-40 169.9 165 56.4
Lj3A780G47 Lonicera japonica HOM05D000264 ORTHO05D000152 2.1e-39 166.0 161 54.7
Lj3A780G48 Lonicera japonica HOM05D000264 ORTHO05D000152 3.3e-37 158.7 159 54.7
Lj3A790T26 Lonicera japonica HOM05D000264 ORTHO05D000152 5.7e-37 157.9 165 52.7
Lj3A793G38 Lonicera japonica HOM05D000264 ORTHO05D000152 3.7e-36 155.2 159 53.5
Lj3A384G20 Lonicera japonica HOM05D000264 ORTHO05D000152 1.8e-35 152.9 185 49.7
Lj3C673G1 Lonicera japonica HOM05D000264 ORTHO05D000152 4.6e-31 138.3 190 45.8
Lj3C792T0 Lonicera japonica HOM05D000264 ORTHO05D000152 6.3e-28 127.9 131 52.7
Lj3A670G8 Lonicera japonica HOM05D000264 ORTHO05D000152 2.9e-25 119.0 190 41.6
Lj3C780G6 Lonicera japonica HOM05D000264 ORTHO05D000152 3.8e-25 118.6 111 53.2
Lj3A661G20 Lonicera japonica HOM05D000264 ORTHO05D000152 6.1e-23 111.3 190 41.1
Lj3A662G12 Lonicera japonica HOM05D000264 ORTHO05D000152 6.3e-20 101.3 73 68.5
Lj3C787G3 Lonicera japonica HOM05D000264 ORTHO05D000152 5.3e-19 98.2 155 40.0
Lj3A718G91 Lonicera japonica HOM05D000264 ORTHO05D000152 1.3e-12 77.0 114 40.4
Dinv14086 Davidia involucrata HOM05D000096 ORTHO05D000045 1.1e-11 73.9 98 40.8
Dinv29924 Davidia involucrata HOM05D000264 ORTHO05D000152 1.1e-11 73.9 98 40.8
QL10p054384 Quercus lobata HOM05D000264 ORTHO05D000152 1.4e-11 73.6 134 38.8
Hma1.2p1_1193F.1_g265580 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 5.3e-11 71.6 91 47.3
FvH4_1g10390 Fragaria vesca HOM05D000264 ORTHO05D000152 9.1e-11 70.9 101 43.6
Lj4A628G55 Lonicera japonica HOM05D000264 ORTHO05D000152 1.2e-10 70.5 92 46.7
Ciclev10004518m.g Citrus clementina HOM05D000264 ORTHO05D000152 2.0e-10 69.7 93 45.2
FvH4_1g10402 Fragaria vesca HOM05D000264 ORTHO05D001690 2.0e-10 69.7 101 42.6
QL10p054050 Quercus lobata HOM05D000264 ORTHO05D000152 2.0e-10 69.7 101 42.6
Hma1.2p1_1193F.1_g265640 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 2.6e-10 69.3 92 47.8
RcHm_v2.0_Chr7g0237491 Rosa chinensis HOM05D000264 ORTHO05D000152 2.6e-10 69.3 90 44.4
CiPaw.01G049800 Carya illinoinensis HOM05D000264 ORTHO05D000152 3.5e-10 68.9 99 41.4
Cc11_g07190 Coffea canephora HOM05D000264 ORTHO05D000152 3.5e-10 68.9 144 36.1
FAN26G1085 Fragaria x ananassa HOM05D000264 ORTHO05D000152 4.5e-10 68.6 101 42.6
Gorai.012G179400 Gossypium raimondii HOM05D000264 ORTHO05D000152 4.5e-10 68.6 133 36.1
CAN.G449.15 Capsicum annuum HOM05D000264 ORTHO05D000152 5.9e-10 68.2 97 35.1
Gorai.012G180100 Gossypium raimondii HOM05D000264 ORTHO05D000152 5.9e-10 68.2 103 42.7
Gorai.012G177600 Gossypium raimondii HOM05D000264 ORTHO05D000152 7.7e-10 67.8 103 42.7
Gohir.D04G184900 Gossypium hirsutum HOM05D000264 ORTHO05D000152 1.0e-09 67.4 103 42.7
FvH4_1g10400 Fragaria vesca HOM05D000264 ORTHO05D000152 2.2e-09 66.2 101 41.6
FAN19G0684 Fragaria x ananassa HOM05D000264 ORTHO05D000152 2.2e-09 66.2 101 41.6
Gohir.D04G184300 Gossypium hirsutum HOM05D000264 ORTHO05D000152 2.2e-09 66.2 103 40.8
Gohir.D04G184400 Gossypium hirsutum HOM05D000264 ORTHO05D000152 2.2e-09 66.2 106 42.5
Gohir.D04G184575 Gossypium hirsutum HOM05D000264 ORTHO05D000152 2.2e-09 66.2 103 40.8
Gorai.012G178000 Gossypium raimondii HOM05D000264 ORTHO05D000152 2.2e-09 66.2 106 42.5
Gorai.012G178600 Gossypium raimondii HOM05D000264 ORTHO05D000152 2.2e-09 66.2 103 40.8
RcHm_v2.0_Chr7g0213401 Rosa chinensis HOM05D000264 ORTHO05D000152 2.2e-09 66.2 101 41.6
CAN.G694.51 Capsicum annuum HOM05D000264 ORTHO05D000152 3.8e-09 65.5 97 35.1
CAN.G694.54 Capsicum annuum HOM05D000264 ORTHO05D000152 3.8e-09 65.5 97 33.0
Dinv29921 Davidia involucrata HOM05D000264 ORTHO05D000152 3.8e-09 65.5 112 40.2
Gohir.D04G184750 Gossypium hirsutum HOM05D000264 ORTHO05D000152 3.8e-09 65.5 103 40.8
Gohir.D04G185250 Gossypium hirsutum HOM05D000264 ORTHO05D000152 3.8e-09 65.5 103 40.8
Gorai.012G179000 Gossypium raimondii HOM05D000264 ORTHO05D000152 3.8e-09 65.5 103 40.8
Potri.019G107400 Populus trichocarpa HOM05D000264 ORTHO05D000152 3.8e-09 65.5 96 40.6
Potri.019G108200 Populus trichocarpa HOM05D000264 ORTHO05D000152 3.8e-09 65.5 93 44.1
Duzib151G0964 Durio zibethinus HOM05D000264 ORTHO05D000152 5.0e-09 65.1 91 44.0
Gorai.012G177900 Gossypium raimondii HOM05D000264 ORTHO05D000152 5.0e-09 65.1 103 39.8
Cc11_g07210 Coffea canephora HOM05D000264 ORTHO05D000152 6.5e-09 64.7 103 37.9
Hma1.2p1_1193F.1_g265570 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 6.5e-09 64.7 90 45.6
Hma1.2p1_1276F.1_g272240 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 6.5e-09 64.7 91 45.1
CAN.G208.89 Capsicum annuum HOM05D000264 ORTHO05D000152 8.5e-09 64.3 149 30.9
Gohir.D04G184600 Gossypium hirsutum HOM05D000264 ORTHO05D000152 8.5e-09 64.3 103 40.8
Gorai.012G178700 Gossypium raimondii HOM05D000264 ORTHO05D000152 8.5e-09 64.3 92 42.4
GSVIVG01013583001 Vitis vinifera HOM05D000264 ORTHO05D000152 8.5e-09 64.3 96 40.6
Gorai.012G177800 Gossypium raimondii HOM05D000264 ORTHO05D000152 1.1e-08 63.9 103 39.8
Nitab4.5_0012130g0010 Nicotiana tabacum HOM05D000264 ORTHO05D000152 1.1e-08 63.9 145 32.4
GSVIVG01020905001 Vitis vinifera HOM05D000264 ORTHO05D000152 1.1e-08 63.9 125 39.2
DCAR_024223 Daucus carota HOM05D000264 ORTHO05D000152 1.5e-08 63.5 116 37.1
Gohir.D04G184525 Gossypium hirsutum HOM05D000264 ORTHO05D000152 1.5e-08 63.5 103 40.8
Gorai.012G178300 Gossypium raimondii HOM05D000264 ORTHO05D000152 1.5e-08 63.5 103 40.8
Potri.019G107700 Populus trichocarpa HOM05D000264 ORTHO05D000152 1.5e-08 63.5 92 41.3
MD15G1232000 Malus domestica HOM05D000264 ORTHO05D000152 1.9e-08 63.2 89 42.7
CANSAT25G3901 Cannabis sativa HOM05D000264 ORTHO05D000152 2.5e-08 62.8 103 40.8
CAN.G694.73 Capsicum annuum HOM05D000264 ORTHO05D000152 2.5e-08 62.8 94 34.0
Gohir.D04G184250 Gossypium hirsutum HOM05D000264 ORTHO05D000152 2.5e-08 62.8 106 40.6
Gorai.012G179600 Gossypium raimondii HOM05D000264 ORTHO05D000152 2.5e-08 62.8 95 42.1
CAN.G694.74 Capsicum annuum HOM05D000264 ORTHO05D000152 3.2e-08 62.4 134 30.6
Ciclev10004657m.g Citrus clementina HOM05D000264 ORTHO05D000152 3.2e-08 62.4 90 40.0
FAN23G1255 Fragaria x ananassa HOM05D000264 ORTHO05D000152 3.2e-08 62.4 101 37.6
Gorai.012G177200 Gossypium raimondii HOM05D000264 ORTHO05D000152 3.2e-08 62.4 103 39.8
MD02G1116900 Malus domestica HOM05D000264 ORTHO05D000152 3.2e-08 62.4 133 34.6
QL10p052455 Quercus lobata HOM05D000264 ORTHO05D000152 3.2e-08 62.4 112 38.4
CAN.G1342.5 Capsicum annuum HOM05D000264 ORTHO05D000152 4.2e-08 62.0 102 37.3
Cc11_g07220 Coffea canephora HOM05D000264 ORTHO05D000152 4.2e-08 62.0 103 35.9
FvH4_1g10380 Fragaria vesca HOM05D000264 ORTHO05D000152 4.2e-08 62.0 101 36.6
FAN19G1494 Fragaria x ananassa HOM05D000264 ORTHO05D000152 5.5e-08 61.6 101 36.6
Gohir.D04G183800 Gossypium hirsutum HOM05D000264 ORTHO05D000152 5.5e-08 61.6 103 39.8
Gorai.012G177500 Gossypium raimondii HOM05D000264 ORTHO05D000152 7.2e-08 61.2 95 42.1
Lj3A789T22 Lonicera japonica HOM05D000264 ORTHO05D000152 7.2e-08 61.2 132 36.4
Potri.019G106000 Populus trichocarpa HOM05D000264 ORTHO05D000152 7.2e-08 61.2 112 37.5
Potri.019G108501 Populus trichocarpa HOM05D000264 ORTHO05D000152 7.2e-08 61.2 90 42.2
Potri.019G108801 Populus trichocarpa HOM05D000264 ORTHO05D000152 7.2e-08 61.2 112 37.5
GSVIVG01020895001 Vitis vinifera HOM05D000264 ORTHO05D000152 7.2e-08 61.2 93 41.9
Ciclev10006527m.g Citrus clementina HOM05D000264 ORTHO05D000152 9.4e-08 60.8 90 40.0
Prupe.7G182300 Prunus persica HOM05D000264 ORTHO05D000152 9.4e-08 60.8 104 38.5
Thecc.04G245400 Theobroma cacao HOM05D000264 ORTHO05D000152 9.4e-08 60.8 92 40.2
CAN.G126.67 Capsicum annuum HOM05D000264 ORTHO05D000152 1.2e-07 60.5 97 34.0
CAN.G126.72 Capsicum annuum HOM05D000264 ORTHO05D000152 1.2e-07 60.5 101 35.6
Ciclev10016608m.g Citrus clementina HOM05D000264 ORTHO05D000152 1.2e-07 60.5 90 40.0
Lj3A790G27 Lonicera japonica HOM05D000264 ORTHO05D000152 1.2e-07 60.5 126 36.5
Lj3C560G2 Lonicera japonica HOM05D000264 ORTHO05D000152 1.2e-07 60.5 88 42.0
Gohir.D04G184200 Gossypium hirsutum HOM05D000264 ORTHO05D000152 1.6e-07 60.1 106 38.7
CAN.G126.62 Capsicum annuum HOM05D000264 ORTHO05D000152 2.1e-07 59.7 94 36.2
CAN.G449.41 Capsicum annuum HOM05D000264 ORTHO05D000152 2.1e-07 59.7 148 30.4
Gohir.D04G184801 Gossypium hirsutum HOM05D000264 ORTHO05D000152 2.1e-07 59.7 94 38.3
Gorai.012G179100 Gossypium raimondii HOM05D000264 ORTHO05D000152 2.1e-07 59.7 94 38.3
Hma1.2p1_1276F.1_g272230 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 2.1e-07 59.7 103 37.9
Lj5A330T28 Lonicera japonica HOM05D000264 ORTHO05D000152 2.1e-07 59.7 88 40.9
Gohir.A04G140732 Gossypium hirsutum HOM05D000264 ORTHO05D000152 2.7e-07 59.3 103 38.8
Prupe.7G182400 Prunus persica HOM05D000264 ORTHO05D000152 2.7e-07 59.3 102 37.3
CAN.G449.16 Capsicum annuum HOM05D000264 ORTHO05D000152 3.6e-07 58.9 102 36.3
FvH4_1g10430 Fragaria vesca HOM05D000264 ORTHO05D000152 3.6e-07 58.9 89 40.4
Gorai.012G180200 Gossypium raimondii HOM05D000264 ORTHO05D000152 3.6e-07 58.9 103 38.8
Hma1.2p1_1193F.1_g265660 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 3.6e-07 58.9 103 37.9
CAN.G126.71 Capsicum annuum HOM05D000264 ORTHO05D000152 4.7e-07 58.5 105 36.2
Cc11_g07820 Coffea canephora HOM05D000264 ORTHO05D000152 4.7e-07 58.5 124 32.3
Gohir.D04G184100 Gossypium hirsutum HOM05D000264 ORTHO05D000152 4.7e-07 58.5 103 40.8
Gohir.D04G184851 Gossypium hirsutum HOM05D000264 ORTHO05D000152 4.7e-07 58.5 92 40.2
Gorai.012G176900 Gossypium raimondii HOM05D000264 ORTHO05D000152 4.7e-07 58.5 103 39.8
Gorai.012G179200 Gossypium raimondii HOM05D000264 ORTHO05D000152 4.7e-07 58.5 92 40.2
Gorai.012G180000 Gossypium raimondii HOM05D000264 ORTHO05D000152 4.7e-07 58.5 92 40.2
arahy.Tifrunner.gnm1.ann1.S75E27 Arachis hypogaea HOM05D000264 ORTHO05D000152 6.1e-07 58.2 96 41.7
CAN.G694.52 Capsicum annuum HOM05D000264 ORTHO05D000152 6.1e-07 58.2 153 30.1
Cc11_g14510 Coffea canephora HOM05D000264 ORTHO05D000152 6.1e-07 58.2 88 40.9
DCAR_005092 Daucus carota HOM05D000264 ORTHO05D000152 6.1e-07 58.2 95 36.8
Lj6A655T45 Lonicera japonica HOM05D000264 ORTHO05D000152 6.1e-07 58.2 104 35.6
Actinidia04481 Actinidia chinensis HOM05D000264 ORTHO05D000152 8.0e-07 57.8 89 43.8
CAN.G861.10 Capsicum annuum HOM05D000264 ORTHO05D000152 8.0e-07 57.8 104 33.7
Dinv29918 Davidia involucrata HOM05D000264 ORTHO05D000152 8.0e-07 57.8 100 39.0
Ciclev10004698m.g Citrus clementina HOM05D000264 ORTHO05D000152 1.0e-06 57.4 90 37.8
Ciclev10006836m.g Citrus clementina HOM05D000264 ORTHO05D000152 1.0e-06 57.4 90 38.9
Gohir.D04G184550 Gossypium hirsutum HOM05D000264 ORTHO05D000152 1.0e-06 57.4 106 38.7
Gohir.D04G185200 Gossypium hirsutum HOM05D000264 ORTHO05D000152 1.0e-06 57.4 92 40.2
Gorai.012G177700 Gossypium raimondii HOM05D000264 ORTHO05D000152 1.0e-06 57.4 106 38.7
Gorai.012G178500 Gossypium raimondii HOM05D000264 ORTHO05D000152 1.0e-06 57.4 106 38.7
CANSAT78G2268 Cannabis sativa HOM05D000264 ORTHO05D000152 1.4e-06 57.0 94 36.2
Ciclev10004944m.g Citrus clementina HOM05D000264 ORTHO05D000152 1.8e-06 56.6 90 41.1
Dinv44629 Davidia involucrata HOM05D000264 ORTHO05D000152 1.8e-06 56.6 78 39.7
Duzib177G0874 Durio zibethinus HOM05D000264 ORTHO05D000152 1.8e-06 56.6 89 34.8
Gorai.012G178200 Gossypium raimondii HOM05D000264 ORTHO05D000152 1.8e-06 56.6 136 34.6
Gorai.012G179800 Gossypium raimondii HOM05D000264 ORTHO05D000152 1.8e-06 56.6 94 37.2
GSVIVG01013569001 Vitis vinifera HOM05D000264 ORTHO05D000152 1.8e-06 56.6 89 38.2
Ciclev10004701m.g Citrus clementina HOM05D000264 ORTHO05D000152 2.3e-06 56.2 90 37.8
Dinv14025 Davidia involucrata HOM05D000001 ORTHO05D000003 2.3e-06 56.2 101 37.6
Gohir.A04G140700 Gossypium hirsutum HOM05D000264 ORTHO05D000152 2.3e-06 56.2 103 37.9
Gohir.D04G184500 Gossypium hirsutum HOM05D000264 ORTHO05D000152 2.3e-06 56.2 138 36.2
QL10p053921 Quercus lobata HOM05D000477 ORTHO05D000338 2.3e-06 56.2 99 35.4
CAN.G1447.15 Capsicum annuum HOM05D000264 ORTHO05D000152 3.0e-06 55.8 89 36.0
CAN.G208.90 Capsicum annuum HOM05D000264 ORTHO05D000152 3.0e-06 55.8 90 35.6
CAN.G449.63 Capsicum annuum HOM05D000264 ORTHO05D000152 3.0e-06 55.8 97 32.0
Ciclev10006866m.g Citrus clementina HOM05D000264 ORTHO05D000152 3.0e-06 55.8 92 38.0
Gorai.012G176800 Gossypium raimondii HOM05D000264 ORTHO05D000152 3.0e-06 55.8 103 37.9
Dinv14027 Davidia involucrata HOM05D000264 ORTHO05D000152 4.0e-06 55.5 89 42.7
Eucgr.D01232 Eucalyptus grandis HOM05D000264 ORTHO05D000152 4.0e-06 55.5 94 39.4
arahy.Tifrunner.gnm1.ann1.98V0PV Arachis hypogaea HOM05D000992 ORTHO05D006704 5.2e-06 55.1 84 42.9
CANSAT25G0846 Cannabis sativa HOM05D000264 ORTHO05D000152 5.2e-06 55.1 103 38.8
CiPaw.01G190700 Carya illinoinensis HOM05D000264 ORTHO05D000152 5.2e-06 55.1 95 36.8
Gohir.D04G184450 Gossypium hirsutum HOM05D000264 ORTHO05D000152 5.2e-06 55.1 102 33.3
Gohir.D04G184700 Gossypium hirsutum HOM05D000264 ORTHO05D000152 5.2e-06 55.1 103 37.9
Gohir.D04G185100 Gossypium hirsutum HOM05D000264 ORTHO05D000152 5.2e-06 55.1 103 38.8
Gorai.012G178100 Gossypium raimondii HOM05D000264 ORTHO05D000152 5.2e-06 55.1 102 33.3
Thecc.04G245500 Theobroma cacao HOM05D000264 ORTHO05D000152 5.2e-06 55.1 92 38.0
Gohir.A04G140800 Gossypium hirsutum HOM05D000264 ORTHO05D000152 6.7e-06 54.7 104 37.5
Lj3A784T13 Lonicera japonica HOM05D000264 ORTHO05D000152 6.7e-06 54.7 141 28.4
Lj6A647T16 Lonicera japonica HOM05D000264 ORTHO05D000152 6.7e-06 54.7 89 39.3
Nn1g06590 Nelumbo nucifera HOM05D000264 ORTHO05D000152 6.7e-06 54.7 93 36.6
GSVIVG01018107001 Vitis vinifera HOM05D000264 ORTHO05D000152 6.7e-06 54.7 91 37.4
CANSAT78G0525 Cannabis sativa HOM05D000264 ORTHO05D000152 8.8e-06 54.3 92 37.0
Hma1.2p1_1193F.1_g265581 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 8.8e-06 54.3 90 37.8
TAR628G1506 Trochodendron aralioides HOM05D000264 ORTHO05D000152 8.8e-06 54.3 86 37.2


User provided reference genes

Program Settings