Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A77G34 Lonicera japonica HOM05D000967 ORTHO05D234786 2.7e-53 212.6 196 100.0
Nitab4.5_0004445g0090 Nicotiana tabacum HOM05D000967 ORTHO05D000796 1.0e-12 77.8 58 63.8
Actinidia05066 Actinidia chinensis HOM05D000967 ORTHO05D000796 1.8e-12 77.0 58 63.8
Manes.15G066600 Manihot esculenta HOM05D000967 ORTHO05D000796 1.8e-12 77.0 58 65.5
Nitab4.5_0005078g0010 Nicotiana tabacum HOM05D000967 ORTHO05D000796 3.0e-12 76.3 50 72.0
Actinidia32278 Actinidia chinensis HOM05D000967 ORTHO05D000796 5.1e-12 75.5 58 63.8
Peaxi162Scf00339g01012 Petunia axillaris HOM05D000967 ORTHO05D000796 5.1e-12 75.5 58 62.1
TWI38G2271 Tripterygium wilfordii HOM05D000967 ORTHO05D000796 6.7e-12 75.1 58 63.8
MSTRG.12995 Avicennia marina HOM05D000967 ORTHO05D000796 8.8e-12 74.7 57 63.2
CSS0022961 Camellia sinensis var. sinensis HOM05D000967 ORTHO05D000796 8.8e-12 74.7 58 63.8
Sed0016238 Sechium edule HOM05D000967 ORTHO05D000796 8.8e-12 74.7 58 62.1
Peaxi162Scf00235g00620 Petunia axillaris HOM05D000967 ORTHO05D000796 2.0e-11 73.6 58 60.3
Thecc.07G029300 Theobroma cacao HOM05D000967 ORTHO05D000796 2.0e-11 73.6 58 62.1
COL.COLO4_09717 Corchorus olitorius HOM05D000001 ORTHO05D000003 2.5e-11 73.2 58 62.1
TWI39G0216 Tripterygium wilfordii HOM05D000967 ORTHO05D000796 2.5e-11 73.2 58 62.1
SHI26577 Sapria himalayana HOM05D000967 ORTHO05D000796 3.3e-11 72.8 58 63.8
vmacro09695 Vaccinium macrocarpon HOM05D000967 ORTHO05D000796 3.3e-11 72.8 57 63.2
Sopen12g007330 Solanum pennellii HOM05D000967 ORTHO05D000796 4.3e-11 72.4 48 70.8
PGSC0003DMG400012860 Solanum tuberosum HOM05D000967 ORTHO05D000796 4.3e-11 72.4 48 70.8
Ca_22850_v3 Cicer arietinum L. HOM05D000967 ORTHO05D000796 7.4e-11 71.6 59 61.0
ClCG09G011030 Citrullus lanatus HOM05D000967 ORTHO05D000796 7.4e-11 71.6 58 62.1
MELO3C013132.2 Cucumis melo HOM05D000967 ORTHO05D000796 7.4e-11 71.6 58 62.1
Duzib213G0441 Durio zibethinus HOM05D000967 ORTHO05D000796 7.4e-11 71.6 58 60.3
Solyc12g014450.2 Solanum lycopersicum HOM05D000967 ORTHO05D000796 7.4e-11 71.6 48 70.8
AL1G58290 Arabidopsis lyrata HOM05D000967 ORTHO05D000796 9.7e-11 71.2 58 62.1
AT1G50630 Arabidopsis thaliana HOM05D000967 ORTHO05D000796 9.7e-11 71.2 58 62.1
Carub.0001s3967 Capsella rubella HOM05D000967 ORTHO05D000796 9.7e-11 71.2 58 62.1
Atru.chr2.3525 Acer truncatum HOM05D000967 ORTHO05D000796 1.3e-10 70.9 58 58.6
Ah.06g182330 Amaranthus hybridus HOM05D000967 ORTHO05D000796 1.3e-10 70.9 58 58.6
Cfa020285 Carpinus fangiana HOM05D000967 ORTHO05D000796 1.3e-10 70.9 58 63.8
Haze_09737 Corylus avellana HOM05D000967 ORTHO05D000796 1.3e-10 70.9 58 63.8
Duzib170G0206 Durio zibethinus HOM05D000967 ORTHO05D000796 1.3e-10 70.9 58 60.3
ECA236G4669 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.3e-10 70.9 58 60.3
Eucgr.F00658 Eucalyptus grandis HOM05D000967 ORTHO05D000796 1.7e-10 70.5 58 62.1
HanXRQChr03g0083021 Helianthus annuus HOM05D000967 ORTHO05D000796 1.7e-10 70.5 58 58.6
HanXRQChr06g0182351 Helianthus annuus HOM05D000967 ORTHO05D000796 1.7e-10 70.5 58 58.6
Nitab4.5_0000168g0080 Nicotiana tabacum HOM05D000967 ORTHO05D000796 1.7e-10 70.5 58 58.6
Nitab4.5_0006743g0010 Nicotiana tabacum HOM05D000967 ORTHO05D000796 1.7e-10 70.5 58 58.6
Potri.001G356200 Populus trichocarpa HOM05D000967 ORTHO05D000796 1.7e-10 70.5 58 62.1
RhsimUnG0248100 Rhododendron simsii HOM05D000967 ORTHO05D000796 1.7e-10 70.5 58 56.9
Solyc10g006120.2 Solanum lycopersicum HOM05D000967 ORTHO05D000796 1.7e-10 70.5 58 58.6
Sopen10g002070 Solanum pennellii HOM05D000967 ORTHO05D000796 1.7e-10 70.5 58 58.6
MSTRG.14460 Avicennia marina HOM05D000967 ORTHO05D000796 2.2e-10 70.1 58 60.3
CiPaw.11G194200 Carya illinoinensis HOM05D000967 ORTHO05D000796 2.2e-10 70.1 58 63.8
CsaV3_7G021170 Cucumis sativus L. HOM05D000967 ORTHO05D000796 2.2e-10 70.1 58 60.3
Sed0017625 Sechium edule HOM05D000967 ORTHO05D000796 2.2e-10 70.1 58 60.3
Aa31LG8G7110 Aethionema arabicum HOM05D000967 ORTHO05D000796 2.8e-10 69.7 58 62.1
CAN.G492.23 Capsicum annuum HOM05D000967 ORTHO05D000796 2.8e-10 69.7 58 58.6
DCAR_016650 Daucus carota HOM05D000967 ORTHO05D000796 2.8e-10 69.7 58 58.6
Hma1.2p1_1332F.1_g276100 Hydrangea macrophylla HOM05D000967 ORTHO05D000796 2.8e-10 69.7 58 58.6
Lsat_1_v5_gn_7_114581 Lactuca sativa HOM05D000967 ORTHO05D000796 2.8e-10 69.7 58 58.6
Nn1g03355 Nelumbo nucifera HOM05D000967 ORTHO05D000796 2.8e-10 69.7 58 60.3
Psat5g172880 Pisum sativum HOM05D000967 ORTHO05D000796 2.8e-10 69.7 59 61.0
AL3G34020 Arabidopsis lyrata HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 62.1
BcaB04g19100 Brassica carinata HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 62.1
BcaB07g33497 Brassica carinata HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 60.3
BcaC08g43230 Brassica carinata HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 60.3
BcaC08g43231 Brassica carinata HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 60.3
A06p03000 Brassica napus HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 60.3
C06p05770 Brassica napus HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 60.3
BolC6t35687H Brassica oleracea HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 60.3
BraA06t23513Z Brassica rapa HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 60.3
Carub.0003s2025 Capsella rubella HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 62.1
CARHR095950 Cardamine hirsuta HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 62.1
Thhalv10011484m.g Eutrema salsugineum HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 60.3
Thhalv10020720m.g Eutrema salsugineum HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 62.1
Sp3g18330 Schrenkiella parvula HOM05D000967 ORTHO05D000796 3.7e-10 69.3 58 62.1
Cc05_g14230 Coffea canephora HOM05D000967 ORTHO05D000796 4.8e-10 68.9 58 56.9
Migut.H01795 Erythranthe guttata HOM05D000967 ORTHO05D000796 4.8e-10 68.9 58 56.9
Peaxi162Scf00235g00625 Petunia axillaris HOM05D000967 ORTHO05D000796 4.8e-10 68.9 58 58.6
Sp1g37450 Schrenkiella parvula HOM05D000967 ORTHO05D000796 4.8e-10 68.9 58 60.3
PGSC0003DMG400022304 Solanum tuberosum HOM05D000967 ORTHO05D000796 4.8e-10 68.9 58 53.4
Aa31LG10G3710 Aethionema arabicum HOM05D000967 ORTHO05D000796 6.3e-10 68.6 58 58.6
CARHR040680 Cardamine hirsuta HOM05D000967 ORTHO05D000796 6.3e-10 68.6 58 58.6
MD11G1210400 Malus domestica HOM05D000967 ORTHO05D000796 6.3e-10 68.6 58 60.3
Cpa.g.sc12.247 Carica papaya HOM05D000967 ORTHO05D000796 8.2e-10 68.2 58 60.3
HanXRQChr13g0408221 Helianthus annuus HOM05D000967 ORTHO05D000796 8.2e-10 68.2 58 60.3
Prupe.4G222600 Prunus persica HOM05D000967 ORTHO05D000796 8.2e-10 68.2 58 60.3
Sc16g0005790 Simmondsia chinensis HOM05D000967 ORTHO05D000796 8.2e-10 68.2 61 59.0
AT3G20300 Arabidopsis thaliana HOM05D000967 ORTHO05D000796 1.1e-09 67.8 58 62.1
Gohir.A01G083900 Gossypium hirsutum HOM05D000967 ORTHO05D000796 1.1e-09 67.8 58 58.6
Gohir.D01G070300 Gossypium hirsutum HOM05D000967 ORTHO05D000796 1.1e-09 67.8 58 58.6
Gorai.002G093000 Gossypium raimondii HOM05D000967 ORTHO05D000796 1.1e-09 67.8 58 58.6
Lj1A880T58 Lonicera japonica HOM05D000967 ORTHO05D000796 1.1e-09 67.8 58 60.3
Lalb_Chr18g0050291 Lupinus albus HOM05D000967 ORTHO05D000796 1.1e-09 67.8 58 60.3
RcHm_v2.0_Chr5g0041291 Rosa chinensis HOM05D000967 ORTHO05D000796 1.1e-09 67.8 58 60.3
Solyc07g064900.3 Solanum lycopersicum HOM05D000967 ORTHO05D000796 1.1e-09 67.8 58 53.4
Sopen07g033100 Solanum pennellii HOM05D000967 ORTHO05D000796 1.1e-09 67.8 58 53.4
Aqoxy1G02873 Aquilegia oxysepala HOM05D000967 ORTHO05D000796 1.4e-09 67.4 90 46.7
A05p28620 Brassica napus HOM05D000967 ORTHO05D000796 1.4e-09 67.4 58 58.6
C05p44020 Brassica napus HOM05D000967 ORTHO05D000796 1.4e-09 67.4 58 58.6
BraA05t21738Z Brassica rapa HOM05D000967 ORTHO05D000796 1.4e-09 67.4 58 58.6
CAN.G337.64 Capsicum annuum HOM05D000967 ORTHO05D000796 1.4e-09 67.4 58 53.4
Glyma.08G321700 Glycine max HOM05D000967 ORTHO05D000796 1.4e-09 67.4 58 58.6
MD11G1210500 Malus domestica HOM05D000967 ORTHO05D000796 1.4e-09 67.4 58 60.3
BolC5t33125H Brassica oleracea HOM05D000967 ORTHO05D000796 1.8e-09 67.0 58 58.6
CANSAT11G0627 Cannabis sativa HOM05D000967 ORTHO05D000796 1.8e-09 67.0 58 56.9
Ciclev10008348m.g Citrus clementina HOM05D000967 ORTHO05D000796 1.8e-09 67.0 58 56.9
Medtr3g054010 Medicago truncatula HOM05D000967 ORTHO05D000796 1.8e-09 67.0 59 59.3
QL08p007346 Quercus lobata HOM05D000967 ORTHO05D000796 1.8e-09 67.0 58 58.6
BcaC01g03569 Brassica carinata HOM05D000967 ORTHO05D000796 2.4e-09 66.6 58 60.3
A03p41670 Brassica napus HOM05D000967 ORTHO05D000796 2.4e-09 66.6 58 60.3
C03p51020 Brassica napus HOM05D000967 ORTHO05D000796 2.4e-09 66.6 58 60.3
BolC3t17386H Brassica oleracea HOM05D000967 ORTHO05D000796 2.4e-09 66.6 58 60.3
BraA03t13320Z Brassica rapa HOM05D000967 ORTHO05D000796 2.4e-09 66.6 58 60.3
HanXRQChr03g0076791 Helianthus annuus HOM05D000967 ORTHO05D000796 2.4e-09 66.6 58 58.6
Lj6g0008869 Lotus japonicus HOM05D000967 ORTHO05D000796 2.4e-09 66.6 48 68.8
Nitab4.5_0000984g0050 Nicotiana tabacum HOM05D000967 ORTHO05D000796 2.4e-09 66.6 58 56.9
Nitab4.5_0002826g0060 Nicotiana tabacum HOM05D000967 ORTHO05D000796 2.4e-09 66.6 58 56.9
Phvul.006G048100 Phaseolus vulgaris HOM05D000967 ORTHO05D000796 2.4e-09 66.6 58 56.9
Prupe.4G222500 Prunus persica HOM05D000967 ORTHO05D000796 2.4e-09 66.6 58 58.6
THA.LOC104817849 Tarenaya hassleriana HOM05D000967 ORTHO05D000796 3.1e-09 66.2 57 59.6
BcaB04g20661 Brassica carinata HOM05D000967 ORTHO05D000796 4.1e-09 65.9 58 58.6
A01p34380 Brassica napus HOM05D000967 ORTHO05D000796 4.1e-09 65.9 58 58.6
BraA01t03535Z Brassica rapa HOM05D000967 ORTHO05D000796 4.1e-09 65.9 58 58.6
FvH4_3g23470 Fragaria vesca HOM05D000967 ORTHO05D000796 4.1e-09 65.9 58 58.6
FAN11G3182 Fragaria x ananassa HOM05D000967 ORTHO05D000796 4.1e-09 65.9 58 58.6
Gohir.A04G012000 Gossypium hirsutum HOM05D000967 ORTHO05D000796 4.1e-09 65.9 58 56.9
Gohir.D05G374600 Gossypium hirsutum HOM05D000967 ORTHO05D000796 4.1e-09 65.9 58 56.9
Gorai.009G443500 Gossypium raimondii HOM05D000967 ORTHO05D000796 4.1e-09 65.9 58 56.9
Lj8C173T4 Lonicera japonica HOM05D000967 ORTHO05D000796 4.1e-09 65.9 39 79.5
BcaB04g19101 Brassica carinata HOM05D000967 ORTHO05D000796 5.3e-09 65.5 58 58.6
Glyma.18G090800 Glycine max HOM05D000967 ORTHO05D000796 5.3e-09 65.5 58 58.6
PGR004G1054 Punica granatum HOM05D000967 ORTHO05D000796 5.3e-09 65.5 58 56.9
TPR.G32245 Trifolium pratense HOM05D000967 ORTHO05D000796 5.3e-09 65.5 59 55.9
MSTRG.6955 Avicennia marina HOM05D000967 ORTHO05D000796 6.9e-09 65.1 58 62.1
Oeu005995.1 Olea europaea HOM05D000967 ORTHO05D000796 6.9e-09 65.1 58 56.9
unitig_8.g4793 Utricularia gibba HOM05D000967 ORTHO05D000796 6.9e-09 65.1 58 53.4
Ah.04g166130 Amaranthus hybridus HOM05D000967 ORTHO05D000796 9.1e-09 64.7 58 56.9
EL10Ac4g07705 Beta vulgaris HOM05D000967 ORTHO05D000796 9.1e-09 64.7 58 56.9
RcHm_v2.0_Chr5g0041311 Rosa chinensis HOM05D000967 ORTHO05D000796 9.1e-09 64.7 57 59.6
TAR624G1268 Trochodendron aralioides HOM05D000967 ORTHO05D000796 9.1e-09 64.7 58 56.9
Aqoxy1G02874 Aquilegia oxysepala HOM05D000967 ORTHO05D000796 1.2e-08 64.3 90 45.6
ECA240G3039 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.2e-08 64.3 58 56.9
Migut.M01716 Erythranthe guttata HOM05D000967 ORTHO05D000796 1.2e-08 64.3 58 56.9
Migut.M01718 Erythranthe guttata HOM05D000967 ORTHO05D000796 1.2e-08 64.3 58 56.9
Lsat_1_v5_gn_9_93240 Lactuca sativa HOM05D000967 ORTHO05D000796 1.2e-08 64.3 58 55.2
MBI19_g29456_MAGBIO Magnolia biondii HOM05D000967 ORTHO05D000796 1.2e-08 64.3 50 60.0
MSTRG.15777 Avicennia marina HOM05D000967 ORTHO05D000796 1.5e-08 63.9 58 58.6
MSTRG.16004 Avicennia marina HOM05D000967 ORTHO05D000796 1.5e-08 63.9 58 58.6
FvH4_3g23460 Fragaria vesca HOM05D000967 ORTHO05D000796 1.5e-08 63.9 58 56.9
FAN11G3882 Fragaria x ananassa HOM05D000967 ORTHO05D000796 1.5e-08 63.9 58 56.9
FAN21G3703 Fragaria x ananassa HOM05D000967 ORTHO05D000796 1.5e-08 63.9 58 56.9
FAN25G2344 Fragaria x ananassa HOM05D000967 ORTHO05D000796 1.5e-08 63.9 58 56.9
BcaC09g48984 Brassica carinata HOM05D000967 ORTHO05D000796 2.0e-08 63.5 58 56.9
Hund23202 Selenicereus undatus HOM05D000967 ORTHO05D000796 2.0e-08 63.5 48 64.6
TAR627G0215 Trochodendron aralioides HOM05D000967 ORTHO05D000796 2.0e-08 63.5 58 58.6
TAR629G1524 Trochodendron aralioides HOM05D000967 ORTHO05D000796 2.0e-08 63.5 58 58.6
C01p43820 Brassica napus HOM05D000967 ORTHO05D000796 2.6e-08 63.2 58 56.9
BolC1t04338H Brassica oleracea HOM05D000967 ORTHO05D000796 2.6e-08 63.2 58 56.9
MSTRG.7189 Avicennia marina HOM05D000967 ORTHO05D000796 4.5e-08 62.4 58 58.6
MBI19_g03682_MAGBIO Magnolia biondii HOM05D000967 ORTHO05D000796 5.9e-08 62.0 40 67.5
SGA_v2.0_scaffold4G01899 Striga asiatica HOM05D000967 ORTHO05D000796 5.9e-08 62.0 58 56.9
MBI16_g26177_MAGBIO Magnolia biondii HOM05D000967 ORTHO05D000796 1.3e-07 60.8 61 49.2
Hund23415 Selenicereus undatus HOM05D000967 ORTHO05D000796 2.2e-07 60.1 57 52.6
AUR62015872 Chenopodium quinoa HOM05D000967 ORTHO05D000796 2.9e-07 59.7 56 53.6
arahy.Tifrunner.gnm1.ann1.HQET6I Arachis hypogaea HOM05D000967 ORTHO05D000796 3.8e-07 59.3 58 51.7
arahy.Tifrunner.gnm1.ann1.ZM1B8D Arachis hypogaea HOM05D000967 ORTHO05D000796 3.8e-07 59.3 58 51.7
Ah.06g182340 Amaranthus hybridus HOM05D000967 ORTHO05D000796 5.0e-07 58.9 48 58.3
CSS0032019 Camellia sinensis var. sinensis HOM05D000967 ORTHO05D000796 5.0e-07 58.9 58 55.2
AUR62020351 Chenopodium quinoa HOM05D000967 ORTHO05D000796 5.0e-07 58.9 47 57.4
Duzib235G0432 Durio zibethinus HOM05D000967 ORTHO05D000796 6.5e-07 58.5 58 51.7
Eucgr.E03959 Eucalyptus grandis HOM05D000967 ORTHO05D000796 6.5e-07 58.5 58 50.0
Gohir.A13G136900 Gossypium hirsutum HOM05D000967 ORTHO05D000796 8.5e-07 58.2 58 51.7
Gohir.D13G141300 Gossypium hirsutum HOM05D000967 ORTHO05D000796 8.5e-07 58.2 58 51.7
Gorai.013G158300 Gossypium raimondii HOM05D000967 ORTHO05D000796 8.5e-07 58.2 58 51.7
Cfa000133 Carpinus fangiana HOM05D000967 ORTHO05D000796 1.4e-06 57.4 51 51.0
PSO541G3968 Papaver somniferum HOM05D000967 ORTHO05D000796 1.4e-06 57.4 58 51.7
PSO675G9298 Papaver somniferum HOM05D000967 ORTHO05D000796 1.4e-06 57.4 58 51.7
Actinidia02330 Actinidia chinensis HOM05D000967 ORTHO05D000796 1.9e-06 57.0 58 55.2
Dinv22236 Davidia involucrata HOM05D000967 ORTHO05D000796 2.5e-06 56.6 49 59.2
Gohir.A10G010400 Gossypium hirsutum HOM05D000967 ORTHO05D000796 2.5e-06 56.6 58 48.3
Gohir.D10G010100 Gossypium hirsutum HOM05D000967 ORTHO05D000796 2.5e-06 56.6 58 48.3
Gorai.011G011100 Gossypium raimondii HOM05D000967 ORTHO05D000796 2.5e-06 56.6 58 48.3
Sc16g0005800 Simmondsia chinensis HOM05D000967 ORTHO05D000796 3.2e-06 56.2 52 53.8
SGA_v2.0_scaffold171G38909 Striga asiatica HOM05D000967 ORTHO05D000796 3.2e-06 56.2 58 51.7
ATR1128G057 Amborella trichopoda HOM05D000967 ORTHO05D000796 4.2e-06 55.8 58 53.4
Hund01968 Selenicereus undatus HOM05D000967 ORTHO05D000796 4.2e-06 55.8 47 55.3
unitig_747.g21654 Utricularia gibba HOM05D000967 ORTHO05D000796 4.2e-06 55.8 58 51.7
Atru.chr10.2309 Acer truncatum HOM05D000967 ORTHO05D000796 5.5e-06 55.5 58 50.0
Haze_06891 Corylus avellana HOM05D000967 ORTHO05D000796 5.5e-06 55.5 51 47.1
EL10Ac8g20148 Beta vulgaris HOM05D000967 ORTHO05D000796 9.4e-06 54.7 57 49.1


User provided reference genes

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