Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 0.0e+00 1850.9 981 100.0
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 0.0e+00 1798.1 981 97.5
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1115.9 1022 61.9
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 6.7e-312 1073.9 980 61.9
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 1.8e-299 1032.7 1018 58.5
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.9e-297 1025.4 1019 58.1
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.0e-286 990.3 1018 56.8
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 8.2e-276 954.1 1044 54.7
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 7.9e-271 937.6 1006 55.0
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 2.5e-269 932.6 995 55.4
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 7.4e-269 931.0 1147 50.7
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 2.6e-266 922.5 1031 53.9
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 5.0e-265 918.3 1042 53.0
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 6.5e-265 917.9 1010 53.1
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 4.2e-264 915.2 1004 54.0
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 3.6e-263 912.1 1041 52.9
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 3.0e-262 909.1 1021 55.7
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 6.7e-262 907.9 992 53.3
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 1.1e-261 907.1 1000 54.4
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 9.7e-261 904.0 1190 48.9
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 2.2e-260 902.9 1008 53.7
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 3.7e-260 902.1 1007 53.8
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 4.8e-260 901.7 939 55.5
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 8.2e-260 901.0 1039 52.6
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 1.4e-259 900.2 1050 55.0
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 5.9e-258 894.8 1002 52.8
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 7.7e-258 894.4 996 54.2
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 2.9e-257 892.5 1023 51.9
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 2.5e-256 889.4 1101 51.3
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 4.2e-256 888.6 1005 52.8
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 8.0e-255 884.4 1000 53.4
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.8e-254 883.2 994 53.8
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 2.2e-252 876.3 1043 52.6
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.8e-252 875.9 990 53.2
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 1.4e-251 873.6 997 51.8
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 4.1e-251 872.1 995 53.3
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 3.5e-250 869.0 1012 52.3
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 4.5e-250 868.6 1014 52.4
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 5.9e-250 868.2 1005 52.6
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 1.3e-249 867.1 1008 52.5
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.3e-249 867.1 1047 50.4
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 2.2e-249 866.3 997 53.0
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 5.0e-249 865.1 993 52.6
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 8.5e-249 864.4 998 52.8
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 1.1e-248 864.0 1010 52.7
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 2.1e-247 859.8 1000 51.8
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 2.1e-247 859.8 1007 51.6
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 1.5e-245 853.6 1003 50.9
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 2.0e-245 853.2 692 64.7
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.7e-244 850.1 994 51.4
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 4.8e-244 848.6 1006 51.2
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 4.8e-244 848.6 1003 51.7
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 2.4e-243 846.3 1004 51.3
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 4.5e-242 842.0 1021 50.0
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 5.9e-242 841.6 1001 51.0
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 3.8e-241 839.0 1026 50.9
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 6.5e-241 838.2 998 50.7
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 1.5e-240 837.0 1028 50.1
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 5.5e-240 835.1 1013 53.5
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 9.4e-240 834.3 1023 50.3
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 3.6e-239 832.4 993 49.7
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 8.0e-239 831.2 1007 51.4
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 4.0e-238 828.9 988 49.7
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 1.5e-237 827.0 997 50.7
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.5e-237 827.0 1002 50.9
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 7.5e-237 824.7 1041 49.5
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.2e-236 823.2 994 50.6
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 6.3e-236 821.6 1005 50.1
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 2.4e-235 819.7 992 50.8
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 7.0e-235 818.1 941 53.2
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 3.8e-233 812.4 1013 50.5
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 5.0e-233 812.0 991 50.5
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.0e-230 804.3 1027 49.8
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 4.4e-229 798.9 1033 48.7
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 7.5e-229 798.1 1004 50.1
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 2.5e-224 783.1 1020 48.1
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 3.3e-224 782.7 979 48.3
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 4.3e-224 782.3 1005 48.0
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 9.5e-224 781.2 1009 48.4
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 1.6e-223 780.4 1007 49.1
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 4.0e-222 775.8 1002 48.5
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 5.2e-222 775.4 1000 48.7
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 6.4e-220 768.5 1006 48.0
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 3.2e-219 766.1 999 47.5
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 4.1e-219 765.8 999 47.9
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 8.6e-217 758.1 1010 47.7
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 3.1e-214 749.6 1003 47.0
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 5.2e-214 748.8 1002 48.2
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 5.8e-213 745.3 1012 46.0
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 1.3e-212 744.2 669 58.3
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 2.9e-212 743.0 668 58.2
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 4.9e-212 742.3 694 58.1
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 1.1e-211 741.1 676 58.3
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 1.4e-211 740.7 1011 46.5
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 3.9e-209 732.6 996 45.8
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 4.3e-208 729.2 993 49.7
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 5.6e-208 728.8 667 57.3
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 1.8e-206 723.8 667 56.5
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 4.9e-204 715.7 695 55.3
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 5.4e-203 712.2 673 56.6
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 1.2e-202 711.1 993 45.5
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 1.2e-202 711.1 681 57.4
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 2.3e-201 706.8 992 46.0
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 3.0e-201 706.4 992 45.2
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 1.1e-200 704.5 688 56.0
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 1.5e-200 704.1 999 44.7
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 6.2e-199 698.7 704 54.5
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 8.1e-199 698.4 992 45.4
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 8.9e-198 694.9 1011 45.1
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 4.4e-197 692.6 1017 44.3
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 3.4e-189 666.4 697 52.2
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 6.0e-186 655.6 680 51.9
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.0e-185 654.8 744 50.8
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 3.5e-178 629.8 1050 40.8
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.8e-175 620.2 1014 41.8
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 2.7e-154 550.4 709 45.1
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 2.7e-146 523.9 669 46.3
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 6.1e-146 522.7 623 48.0
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 9.7e-136 488.8 759 44.0
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 4.1e-118 430.3 663 40.4
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 4.1e-102 377.1 525 39.0
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.7e-95 355.1 304 58.2
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.9e-94 351.7 475 39.8
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.9e-94 351.7 759 32.7
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 9.5e-91 339.3 454 39.9
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 7.2e-30 137.1 371 28.3
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.6e-29 134.8 115 62.6
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 7.4e-27 127.1 115 60.9
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 4.1e-25 121.3 378 36.2
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 3.0e-20 105.1 182 39.6
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 3.7e-18 98.2 142 43.0
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 1.2e-13 83.2 146 37.7
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 1.6e-13 82.8 146 37.7
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 1.3e-10 73.2 106 40.6
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 4.8e-10 71.2 83 51.8
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 5.4e-09 67.8 106 39.6
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 1.0e-07 63.5 82 48.8
SGA_v2.0_scaffold57G20265 Striga asiatica HOM05D005408 ORTHO05D006790 1.1e-06 60.1 89 43.8


User provided reference genes

Program Settings