Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 0.0e+00 1845.1 981 100.0
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 0.0e+00 1798.9 981 97.5
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1117.1 1022 62.0
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 1.3e-311 1073.2 980 61.9
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 6.9e-299 1030.8 1019 58.2
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 7.6e-298 1027.3 1018 58.5
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.6e-287 993.0 1018 56.8
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 2.5e-280 969.1 1044 55.3
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 9.0e-275 950.7 1006 55.6
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 2.1e-271 939.5 995 55.9
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 2.0e-269 932.9 1147 50.9
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 6.3e-268 927.9 1034 54.3
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.8e-267 926.4 1040 52.9
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 1.3e-265 920.2 1039 52.8
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 6.5e-265 917.9 1010 53.1
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 8.5e-265 917.5 1019 55.3
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.9e-264 916.4 1006 54.2
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 7.9e-263 911.0 994 53.6
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 3.9e-262 908.7 1002 53.5
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 5.1e-262 908.3 999 54.6
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 6.7e-262 907.9 1035 52.5
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 2.6e-261 906.0 1044 55.4
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 3.3e-261 905.6 1002 53.5
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 5.7e-261 904.8 1002 53.5
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 1.3e-260 903.7 1023 52.1
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 2.2e-260 902.9 1190 48.9
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 8.2e-260 901.0 1001 53.5
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 9.1e-259 897.5 996 54.7
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 1.5e-258 896.7 999 53.8
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.5e-258 896.7 1101 51.5
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 2.9e-257 892.5 1005 53.1
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 3.6e-255 885.6 998 52.2
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 3.6e-255 885.6 998 53.0
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 6.1e-255 884.8 994 54.2
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.9e-254 882.1 984 54.0
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 1.5e-253 880.2 1041 52.6
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 1.7e-252 876.7 1014 53.0
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 1.7e-252 876.7 997 53.6
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 8.2e-252 874.4 995 53.3
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 8.2e-252 874.4 1008 53.1
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.1e-251 874.0 1044 52.6
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.8e-251 873.2 1000 52.3
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 3.1e-251 872.5 993 52.9
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 9.1e-251 870.9 1010 52.3
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 3.5e-250 869.0 1005 52.6
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 5.9e-250 868.2 998 52.9
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.5e-248 863.6 1006 52.0
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 7.2e-248 861.3 688 65.7
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 1.6e-247 860.1 1013 52.3
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.7e-247 859.4 1003 52.2
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.1e-247 858.2 994 52.1
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 8.8e-246 854.4 1003 50.9
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 4.4e-245 852.0 1001 51.5
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 9.8e-245 850.9 1011 51.2
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 4.1e-243 845.5 1013 54.3
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 1.2e-242 844.0 1020 49.9
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.6e-242 843.6 1013 49.6
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 2.7e-242 842.8 998 51.0
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 4.5e-242 842.0 1023 51.2
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 1.0e-241 840.9 993 50.3
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 2.9e-241 839.3 1028 50.4
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 1.9e-240 836.6 1023 50.6
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.9e-240 836.6 1041 50.0
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 6.1e-239 831.6 1001 50.5
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 2.3e-238 829.7 1007 51.1
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 5.2e-238 828.6 1005 50.4
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 5.2e-238 828.6 1007 50.1
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 8.8e-238 827.8 1002 51.0
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 2.0e-237 826.6 992 51.0
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 9.8e-237 824.3 1013 51.0
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 4.9e-236 822.0 941 53.5
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.7e-233 813.5 991 50.7
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 3.8e-233 812.4 1027 50.0
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 4.0e-230 802.4 1033 49.0
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 3.4e-229 799.3 1004 49.9
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 4.9e-228 795.4 1032 48.3
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 3.5e-226 789.3 1009 48.9
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 4.6e-226 788.9 1004 49.2
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 2.3e-225 786.6 979 48.6
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 8.6e-225 784.6 1020 48.3
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 1.5e-224 783.9 999 49.1
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 9.5e-224 781.2 1001 48.8
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 1.8e-222 776.9 998 47.9
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 6.8e-222 775.0 1003 48.1
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 6.4e-220 768.5 998 48.1
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 3.0e-217 759.6 1012 47.5
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 8.6e-217 758.1 1003 47.3
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 1.6e-215 753.8 1013 46.4
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 6.2e-215 751.9 1001 48.6
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 5.8e-213 745.3 669 58.3
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 5.8e-213 745.3 1005 47.3
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 1.7e-212 743.8 1013 46.2
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 4.9e-212 742.3 668 58.2
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 1.1e-211 741.1 995 46.2
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 1.1e-211 741.1 676 58.4
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.1e-208 731.1 692 56.4
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 5.6e-208 728.8 667 57.3
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 6.2e-207 725.3 996 49.5
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 6.2e-207 725.3 667 56.7
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 1.1e-206 724.5 994 45.8
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 2.3e-206 723.4 994 46.2
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 1.7e-204 717.2 996 45.8
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 1.9e-203 713.8 995 45.6
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 1.9e-203 713.8 999 45.0
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 5.4e-203 712.2 1013 45.6
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 9.2e-203 711.4 673 56.6
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 4.6e-202 709.1 681 57.4
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 5.1e-201 705.7 1017 44.8
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 5.1e-201 705.7 704 54.8
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 1.1e-200 704.5 688 55.8
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 7.3e-192 675.2 680 53.2
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 5.8e-189 665.6 680 52.2
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 6.0e-186 655.6 751 50.7
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.4e-179 634.4 1048 40.8
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 7.4e-176 622.1 1029 41.0
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 4.2e-155 553.1 709 45.3
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 1.0e-148 531.9 671 46.5
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 3.0e-145 520.4 1033 37.5
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 8.0e-138 495.7 758 45.4
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 6.3e-119 433.0 691 39.8
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 2.0e-101 374.8 527 39.3
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 4.7e-98 363.6 304 59.2
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.7e-95 355.1 778 32.4
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 8.3e-95 352.8 474 39.7
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 2.5e-91 341.3 454 39.9
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 1.9e-30 139.0 369 28.2
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.5e-30 138.7 115 64.3
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.0e-27 129.0 115 61.7
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 7.0e-25 120.6 378 36.5
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.2e-19 103.2 182 39.0
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 6.3e-18 97.4 142 42.3
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 1.2e-13 83.2 146 37.0
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 1.6e-13 82.8 146 37.0
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 1.3e-10 73.2 83 53.0
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 2.8e-10 72.0 106 40.6
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 1.2e-08 66.6 106 39.6
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 1.7e-07 62.8 55 60.0
SGA_v2.0_scaffold57G20265 Striga asiatica HOM05D005408 ORTHO05D006790 1.7e-07 62.8 89 44.9


User provided reference genes

Program Settings