Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 0.0e+00 1308.5 719 100.0
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 8.6e-166 588.2 743 54.5
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 9.3e-144 515.0 569 61.7
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.1e-134 482.6 702 49.9
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.8e-132 476.1 703 47.8
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 7.6e-130 468.8 721 49.2
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 3.4e-122 443.4 681 49.8
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.5e-120 437.2 727 45.8
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.5e-117 427.9 570 54.7
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 6.7e-110 402.5 703 45.0
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 8.8e-110 402.1 710 44.5
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.5e-109 401.4 723 43.4
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 1.5e-109 401.4 703 44.2
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.4e-109 399.8 707 44.7
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 8.2e-108 395.6 718 44.4
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 1.8e-107 394.4 703 43.7
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 7.0e-107 392.5 699 43.6
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.7e-105 387.9 737 41.2
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.4e-102 378.3 708 44.8
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 4.0e-102 376.7 713 45.6
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.1e-101 375.2 740 41.4
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.1e-101 375.2 673 47.7
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.5e-101 374.8 701 46.9
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 2.0e-101 374.4 699 44.8
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.8e-100 370.5 362 64.4
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.7e-100 370.2 674 44.1
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 1.4e-99 368.2 713 42.4
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.8e-99 367.9 735 43.8
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.1e-99 366.7 674 44.5
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 4.1e-99 366.7 718 43.6
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 4.1e-99 366.7 704 42.9
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 5.3e-99 366.3 699 41.3
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 7.0e-99 365.9 699 46.5
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 2.0e-98 364.4 704 42.8
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.1e-96 358.6 777 41.6
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 7.2e-96 355.9 696 42.0
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 4.0e-94 350.1 719 43.7
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 8.8e-94 349.0 695 44.0
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 1.3e-92 345.1 703 40.7
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-92 345.1 684 42.7
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 1.8e-91 341.3 689 45.1
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 2.4e-91 340.9 538 46.8
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.0e-90 337.8 679 42.4
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 3.5e-90 337.0 768 41.5
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 4.5e-90 336.7 722 42.7
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.3e-89 335.1 553 45.4
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 3.8e-89 333.6 714 38.5
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.5e-89 332.8 683 45.1
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 1.1e-88 332.0 683 45.1
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.1e-88 332.0 681 40.8
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.6e-87 328.2 675 44.6
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 3.6e-87 327.0 669 39.9
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.6e-87 327.0 693 39.8
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 6.1e-87 326.2 653 42.3
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 5.2e-86 323.2 687 42.1
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 8.8e-86 322.4 619 44.7
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 3.4e-85 320.5 700 41.1
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 9.8e-85 318.9 694 39.3
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 1.7e-84 318.2 734 37.9
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.7e-84 317.0 679 43.6
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 8.3e-84 315.8 657 44.3
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.4e-83 315.1 716 39.9
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 1.2e-82 312.0 724 41.4
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.0e-81 308.9 679 40.4
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.3e-81 307.8 699 40.5
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 6.6e-81 306.2 686 42.7
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 5.6e-80 303.1 693 38.5
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 9.5e-80 302.4 704 40.8
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 1.2e-79 302.0 721 38.7
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 2.1e-79 301.2 707 37.3
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 3.6e-79 300.4 731 36.0
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 4.0e-78 297.0 742 37.7
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 5.2e-78 296.6 790 36.7
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 6.8e-78 296.2 727 37.3
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 6.8e-78 296.2 700 38.7
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.5e-77 295.0 313 64.5
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.7e-76 291.6 820 34.0
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 6.4e-76 289.7 719 37.0
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-75 288.5 677 41.5
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.2e-74 285.4 770 38.2
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 3.5e-74 283.9 685 36.4
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 5.9e-74 283.1 733 38.3
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 7.8e-74 282.7 296 58.4
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 2.3e-73 281.2 709 36.4
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 5.0e-73 280.0 707 37.6
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 5.0e-73 280.0 707 39.0
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 2.5e-72 277.7 728 37.6
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 9.5e-72 275.8 537 45.1
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 1.6e-71 275.0 762 38.1
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 1.6e-71 275.0 786 37.3
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 8.0e-71 272.7 701 41.9
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 8.0e-71 272.7 655 38.6
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.8e-70 271.6 711 37.4
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 3.4e-69 267.3 630 40.0
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 7.5e-69 266.2 708 35.3
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 3.7e-68 263.8 720 38.9
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 6.4e-68 263.1 746 38.3
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.4e-67 261.9 389 48.1
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 5.4e-67 260.0 707 37.2
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 5.4e-67 260.0 573 40.5
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 2.7e-66 257.7 453 48.1
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 3.0e-65 254.2 464 40.3
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 3.3e-64 250.8 592 38.9
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 3.3e-64 250.8 676 39.1
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 1.4e-62 245.4 507 43.4
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 4.0e-62 243.8 435 45.1
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 2.0e-61 241.5 385 52.7
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 3.7e-60 237.3 682 38.0
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 6.4e-60 236.5 485 43.5
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 1.4e-59 235.3 672 37.6
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 1.4e-59 235.3 706 35.8
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.2e-58 232.3 678 36.9
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 3.5e-58 230.7 673 37.9
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 3.5e-58 230.7 285 54.4
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 3.0e-57 227.6 707 36.4
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 8.6e-57 226.1 509 41.5
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 1.9e-56 224.9 451 42.4
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 5.6e-56 223.4 518 40.2
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.6e-55 221.9 564 37.9
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.8e-54 218.4 505 40.6
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 7.6e-53 213.0 681 36.0
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 3.2e-51 207.6 519 39.5
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 4.1e-51 207.2 700 34.7
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 1.6e-50 205.3 525 38.7
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.0e-49 202.6 357 47.3
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 2.3e-49 201.4 675 36.0
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 9.6e-48 196.1 471 41.0
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 2.8e-47 194.5 467 40.5
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 4.7e-47 193.7 695 33.8
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 6.9e-46 189.9 670 35.8
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 8.9e-46 189.5 458 40.8
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 3.4e-45 187.6 546 35.9
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 7.6e-45 186.4 456 40.1
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 7.6e-45 186.4 219 55.7
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 8.4e-44 183.0 704 33.1
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.9e-40 171.8 522 33.9
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.1e-35 156.0 700 31.9
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 6.0e-34 150.2 326 35.0
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 3.1e-30 137.9 100 74.0
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 4.2e-27 127.5 659 30.3
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.9e-25 120.9 251 41.0
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.6e-23 115.5 343 30.0
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 8.1e-23 113.2 340 31.5
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.9e-20 104.0 68 82.4
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.5e-18 97.8 66 78.8
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 7.9e-18 96.7 340 30.9
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.8e-15 88.2 55 83.6
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.8e-15 87.4 58 79.3
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.3e-15 87.0 56 82.1
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.3e-15 87.0 55 83.6
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.3e-15 87.0 57 80.7
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 2.4e-14 85.1 452 25.4
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 2.4e-14 85.1 312 37.5
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 3.1e-14 84.7 473 26.0
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.5e-13 82.4 328 27.4
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-12 78.6 49 81.6
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-12 78.6 50 82.0
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 2.2e-12 78.6 279 32.6
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.9e-12 78.2 49 81.6
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.5e-12 77.0 50 80.0
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-11 76.3 48 81.2
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-11 76.3 49 79.6
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 9.3e-11 73.2 103 40.8
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 2.1e-10 72.0 57 68.4
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.6e-10 70.9 118 47.5
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 1.3e-09 69.3 95 49.5
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.7e-09 66.6 57 68.4
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.5e-08 65.9 86 53.5
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 2.5e-08 65.1 57 57.9
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.7e-07 61.2 39 76.9
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-06 59.7 39 74.4
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 1.8e-06 58.9 37 78.4
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 1.8e-06 58.9 37 78.4
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.1e-06 58.2 39 71.8
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.9e-06 57.0 39 71.8
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.1e-06 56.6 39 71.8


User provided reference genes

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