Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 7.6e-65 250.4 128 100.0
Lj3A1060T72 Lonicera japonica HOM05D004112 ORTHO05D004739 2.0e-25 119.4 66 93.9
Lj3C53G2 Lonicera japonica HOM05D004112 ORTHO05D004739 2.6e-20 102.4 65 84.6
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 2.2e-19 99.4 101 57.4
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.6e-14 83.2 105 48.6
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 6.1e-14 81.3 102 50.0
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.0e-13 80.5 100 48.0
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 6.8e-13 77.8 103 45.6
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.7e-12 74.7 109 47.7
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 5.7e-12 74.7 103 48.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.3e-11 73.6 103 46.6
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.7e-11 73.2 105 47.6
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 2.8e-11 72.4 104 43.3
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 4.8e-11 71.6 105 44.8
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 6.3e-11 71.2 102 48.0
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 8.3e-11 70.9 105 47.6
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 8.3e-11 70.9 103 39.8
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.4e-10 70.1 109 45.0
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.4e-10 69.3 109 45.9
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 3.1e-10 68.9 102 46.1
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 7.0e-10 67.8 112 42.0
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.2e-09 67.0 100 47.0
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 1.2e-09 67.0 106 45.3
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.7e-09 65.9 109 43.1
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.7e-09 65.9 99 45.5
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.5e-09 65.5 109 43.1
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.5e-09 65.5 101 47.5
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 4.5e-09 65.1 116 37.1
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 5.9e-09 64.7 101 40.6
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.0e-08 63.9 111 43.2
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 3.8e-08 62.0 105 44.8
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 5.0e-08 61.6 115 37.4
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 6.5e-08 61.2 103 42.7
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 6.5e-08 61.2 98 44.9
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 8.5e-08 60.8 106 41.5
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 8.5e-08 60.8 106 41.5
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 8.5e-08 60.8 100 45.0
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 8.5e-08 60.8 100 45.0
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.1e-07 60.5 105 43.8
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.1e-07 60.5 105 43.8
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.1e-07 60.5 143 33.6
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.5e-07 60.1 100 37.0
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.5e-07 60.1 118 39.8
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.9e-07 59.7 105 37.1
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 2.5e-07 59.3 104 38.5
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 2.5e-07 59.3 105 43.8
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 2.5e-07 59.3 98 43.9
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.5e-07 59.3 149 32.9
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.5e-07 59.3 105 40.0
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 3.2e-07 58.9 103 41.7
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 5.5e-07 58.2 100 43.0
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 5.5e-07 58.2 101 40.6
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 5.5e-07 58.2 107 36.4
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 5.5e-07 58.2 149 33.6
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 7.2e-07 57.8 147 32.7
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 9.4e-07 57.4 104 38.5
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 9.4e-07 57.4 105 36.2
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.2e-06 57.0 102 40.2
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.2e-06 57.0 127 36.2
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.6e-06 56.6 102 40.2
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.6e-06 56.6 101 39.6
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.6e-06 56.6 106 42.5
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 2.1e-06 56.2 112 37.5
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 2.7e-06 55.8 101 39.6
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 2.7e-06 55.8 101 41.6
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 2.7e-06 55.8 103 42.7
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 3.6e-06 55.5 107 39.3
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 3.6e-06 55.5 103 39.8
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 4.7e-06 55.1 107 39.3
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 4.7e-06 55.1 101 40.6
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.7e-06 55.1 104 38.5
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 6.1e-06 54.7 99 39.4
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 6.1e-06 54.7 100 36.0
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 6.1e-06 54.7 100 37.0
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 8.0e-06 54.3 101 38.6


User provided reference genes

Program Settings