Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A626T15 Lonicera japonica HOM05D000596 ORTHO05D001497 3.6e-55 218.0 109 100.0
Lj3C626G0 Lonicera japonica HOM05D000596 ORTHO05D001497 5.0e-49 197.6 102 96.1
Lj3C619G2 Lonicera japonica HOM05D000596 ORTHO05D001497 1.4e-48 196.1 104 92.3
Lj3P623T4 Lonicera japonica HOM05D000596 ORTHO05D001497 5.5e-48 194.1 102 94.1
Lj3A628G5 Lonicera japonica HOM05D000596 ORTHO05D001497 8.8e-46 186.8 102 90.2
Lj3C624G0 Lonicera japonica HOM05D000596 ORTHO05D001497 2.6e-45 185.3 102 88.2
Lju682C9G10 Lonicera japonica HOM05D000596 ORTHO05D001497 7.4e-45 183.7 104 87.5
Lj3A628G6 Lonicera japonica HOM05D000596 ORTHO05D001497 6.7e-38 160.6 101 77.2
Lj3C624T3 Lonicera japonica HOM05D000596 ORTHO05D001497 6.7e-38 160.6 101 77.2
Lj1A501G15 Lonicera japonica HOM05D000596 ORTHO05D001497 8.3e-20 100.5 98 54.1
Lj1C516G0 Lonicera japonica HOM05D000596 ORTHO05D001497 8.3e-20 100.5 98 54.1
Lj3A496T11 Lonicera japonica HOM05D000596 ORTHO05D001497 2.4e-19 99.0 99 52.5
Lj3C497T1 Lonicera japonica HOM05D000596 ORTHO05D001497 7.0e-19 97.4 99 52.5
Lj3P625T8 Lonicera japonica HOM05D000596 ORTHO05D001497 4.7e-15 84.7 48 89.6
Lj3C453G0 Lonicera japonica HOM05D000596 ORTHO05D001497 1.0e-14 83.6 103 46.6
Lj3P430T4 Lonicera japonica HOM05D000596 ORTHO05D001497 5.2e-14 81.3 100 46.0
Lj1A498G7 Lonicera japonica HOM05D000596 ORTHO05D001497 2.0e-13 79.3 100 44.0
Lj1C519G0 Lonicera japonica HOM05D000596 ORTHO05D001497 2.0e-13 79.3 101 41.6
Lj1C520G1 Lonicera japonica HOM05D000596 ORTHO05D001497 2.0e-13 79.3 100 44.0
Lj1C499G0 Lonicera japonica HOM05D000596 ORTHO05D001497 2.6e-13 79.0 100 42.0
Manes.16G065800 Manihot esculenta HOM05D000596 ORTHO05D001497 1.3e-12 76.6 103 35.0
Manes.16G067901 Manihot esculenta HOM05D000596 ORTHO05D001497 1.3e-12 76.6 103 35.0
Manes.16G068951 Manihot esculenta HOM05D000596 ORTHO05D001497 1.3e-12 76.6 103 35.9
Manes.16G069001 Manihot esculenta HOM05D000596 ORTHO05D001497 4.9e-12 74.7 103 36.9
Manes.10G105128 Manihot esculenta HOM05D000596 ORTHO05D001497 2.4e-11 72.4 103 31.1
Manes.16G000900 Manihot esculenta HOM05D000596 ORTHO05D001497 2.4e-11 72.4 103 33.0
Cc08_g07420 Coffea canephora HOM05D000596 ORTHO05D001497 9.2e-11 70.5 103 33.0
Lj3g0003312 Lotus japonicus HOM05D000596 ORTHO05D001497 2.0e-10 69.3 102 32.4
Hma1.2p1_0528F.1_g172970 Hydrangea macrophylla HOM05D000596 ORTHO05D001497 6.0e-10 67.8 102 35.3
Hma1.2p1_0667F.1_g199646 Hydrangea macrophylla HOM05D000596 ORTHO05D001497 6.0e-10 67.8 102 35.3
MBI18_g01522_MAGBIO Magnolia biondii HOM05D000596 ORTHO05D001497 7.8e-10 67.4 97 33.0
Cc08_g07540 Coffea canephora HOM05D000596 ORTHO05D001497 1.0e-09 67.0 103 30.1
Hma1.2p1_0528F.1_g172980 Hydrangea macrophylla HOM05D000596 ORTHO05D001497 1.3e-09 66.6 87 37.9
Hma1.2p1_0667F.1_g199643 Hydrangea macrophylla HOM05D000596 ORTHO05D001497 1.3e-09 66.6 87 37.9
Peaxi162Scf00014g02412 Petunia axillaris HOM05D000596 ORTHO05D001497 1.7e-09 66.2 102 30.4
Aqoxy1G03943 Aquilegia oxysepala HOM05D000596 ORTHO05D001497 8.6e-09 63.9 104 29.8
Aqoxy4G00495 Aquilegia oxysepala HOM05D000596 ORTHO05D001497 1.5e-08 63.2 102 29.4
TWI38G0790 Tripterygium wilfordii HOM05D000596 ORTHO05D001497 1.5e-08 63.2 102 30.4
TAR626G0464 Trochodendron aralioides HOM05D000596 ORTHO05D001497 1.5e-08 63.2 97 32.0
Peaxi162Scf00045g00917 Petunia axillaris HOM05D000596 ORTHO05D001497 2.5e-08 62.4 102 29.4
Peaxi162Scf00071g00033 Petunia axillaris HOM05D000596 ORTHO05D001497 3.3e-08 62.0 102 29.4
Zm00001eb071080 Zea mays HOM05D000596 ORTHO05D001497 3.3e-08 62.0 102 31.4
Nn7g38350 Nelumbo nucifera HOM05D000596 ORTHO05D001497 4.3e-08 61.6 96 28.1
Peaxi162Scf00009g02721 Petunia axillaris HOM05D000596 ORTHO05D001497 4.3e-08 61.6 87 31.0
Zm00001eb047160 Zea mays HOM05D000596 ORTHO05D001497 4.3e-08 61.6 97 33.0
Nitab4.5_0005724g0010 Nicotiana tabacum HOM05D000596 ORTHO05D001497 5.6e-08 61.2 103 27.2
Duzib268G1815 Durio zibethinus HOM05D000596 ORTHO05D001497 7.3e-08 60.8 102 30.4
arahy.Tifrunner.gnm1.ann1.E0N850 Arachis hypogaea HOM05D000596 ORTHO05D001497 9.5e-08 60.5 102 29.4
Medtr3g058160 Medicago truncatula HOM05D000596 ORTHO05D001497 9.5e-08 60.5 102 29.4
Os04g0611700 Oryza sativa ssp. japonica HOM05D000596 ORTHO05D001497 9.5e-08 60.5 104 30.8
Zm00001eb071070 Zea mays HOM05D000596 ORTHO05D001497 9.5e-08 60.5 100 30.0
ATR0763G212 Amborella trichopoda HOM05D000596 ORTHO05D001497 1.2e-07 60.1 98 30.6
Migut.A00367 Erythranthe guttata HOM05D000596 ORTHO05D001497 1.2e-07 60.1 105 29.5
Glyma.08G163900 Glycine max HOM05D000596 ORTHO05D001497 1.2e-07 60.1 102 30.4
TWI38G0803 Tripterygium wilfordii HOM05D000596 ORTHO05D001497 1.6e-07 59.7 102 29.4
FAN25G2816 Fragaria x ananassa HOM05D000596 ORTHO05D001497 2.1e-07 59.3 100 29.0
arahy.Tifrunner.gnm1.ann1.JE8Q7C Arachis hypogaea HOM05D000596 ORTHO05D001497 2.8e-07 58.9 102 29.4
CiPaw.11G057400 Carya illinoinensis HOM05D000596 ORTHO05D001497 3.6e-07 58.5 102 29.4
COL.COLO4_24972 Corchorus olitorius HOM05D000596 ORTHO05D001497 3.6e-07 58.5 102 27.5
Lj1C252T4 Lonicera japonica HOM05D000596 ORTHO05D001497 3.6e-07 58.5 101 31.7
Lj3A466T18 Lonicera japonica HOM05D000596 ORTHO05D001497 3.6e-07 58.5 53 60.4
Nitab4.5_0004164g0010 Nicotiana tabacum HOM05D000596 ORTHO05D001497 3.6e-07 58.5 103 29.1
PSO302G0209 Papaver somniferum HOM05D000596 ORTHO05D001497 3.6e-07 58.5 100 29.0
HPP92_004198 Vanilla planifolia HOM05D000596 ORTHO05D001497 3.6e-07 58.5 97 29.9
GSVIVG01036724001 Vitis vinifera HOM05D000596 ORTHO05D001497 3.6e-07 58.5 102 28.4
Lj3g0006630 Lotus japonicus HOM05D000596 ORTHO05D001497 4.7e-07 58.2 99 29.3
Nitab4.5_0006080g0020 Nicotiana tabacum HOM05D000596 ORTHO05D001497 6.2e-07 57.8 100 28.0
QL04p093712 Quercus lobata HOM05D000596 ORTHO05D001497 6.2e-07 57.8 102 28.4
Peaxi162Scf00452g00236 Petunia axillaris HOM05D000596 ORTHO05D001497 8.0e-07 57.4 102 27.5
Os04g0612000 Oryza sativa ssp. japonica HOM05D000596 ORTHO05D001497 1.1e-06 57.0 99 27.3
TWI38G2002 Tripterygium wilfordii HOM05D000596 ORTHO05D001497 1.1e-06 57.0 102 29.4
Ca_03177_v3 Cicer arietinum L. HOM05D000596 ORTHO05D001497 1.4e-06 56.6 102 28.4
Lj1A252T37 Lonicera japonica HOM05D000596 ORTHO05D001497 1.4e-06 56.6 104 29.8
Sopen07g034820 Solanum pennellii HOM05D000596 ORTHO05D001497 1.4e-06 56.6 102 27.5
TPR.G28437 Trifolium pratense HOM05D000596 ORTHO05D001497 1.4e-06 56.6 99 27.3
Gohir.D01G085000 Gossypium hirsutum HOM05D000596 ORTHO05D001497 1.8e-06 56.2 102 24.5
Nitab4.5_0009197g0020 Nicotiana tabacum HOM05D000596 ORTHO05D001497 1.8e-06 56.2 81 34.6
Dinv42464 Davidia involucrata HOM05D000596 ORTHO05D001497 3.1e-06 55.5 102 28.4
FAN25G1693 Fragaria x ananassa HOM05D000596 ORTHO05D001497 3.1e-06 55.5 99 27.3
Nitab4.5_0002862g0030 Nicotiana tabacum HOM05D000596 ORTHO05D001497 3.1e-06 55.5 106 28.3
Thecc.07G189000 Theobroma cacao HOM05D000596 ORTHO05D001497 3.1e-06 55.5 102 27.5
PGSC0003DMG400022114 Solanum tuberosum HOM05D000596 ORTHO05D001497 4.0e-06 55.1 102 27.5
Haze_07767 Corylus avellana HOM05D000596 ORTHO05D001497 5.2e-06 54.7 102 25.5
Manes.16G047800 Manihot esculenta HOM05D000596 ORTHO05D001497 5.2e-06 54.7 101 30.7
Medtr2g064295 Medicago truncatula HOM05D000596 ORTHO05D001497 5.2e-06 54.7 99 28.3
TPR.G3601 Trifolium pratense HOM05D000596 ORTHO05D001497 5.2e-06 54.7 101 26.7
Gorai.002G110600 Gossypium raimondii HOM05D000596 ORTHO05D001497 6.8e-06 54.3 102 23.5
Zm00001eb071090 Zea mays HOM05D000596 ORTHO05D001497 6.8e-06 54.3 102 27.5
Gohir.A01G100300 Gossypium hirsutum HOM05D000596 ORTHO05D001497 8.9e-06 53.9 102 23.5


User provided reference genes

Program Settings