Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 2.7e-132 475.3 239 100.0
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 2.4e-96 355.9 239 79.1
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 1.7e-86 323.2 230 72.6
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 3.6e-84 315.5 224 74.6
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 3.6e-84 315.5 224 74.6
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 4.7e-84 315.1 235 70.2
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 3.4e-82 308.9 236 68.2
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 4.1e-80 302.0 237 67.5
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 2.7e-79 299.3 239 66.9
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 1.1e-77 293.9 230 66.5
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 2.5e-77 292.7 222 68.5
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.5e-77 292.7 235 66.4
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.6e-76 290.0 226 66.8
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 1.6e-76 290.0 235 67.2
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 1.4e-75 287.0 235 64.7
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 1.4e-75 287.0 230 66.5
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 1.4e-75 287.0 234 65.4
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 3.0e-75 285.8 234 65.0
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 8.9e-75 284.3 233 66.1
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 1.5e-74 283.5 234 64.5
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 1.7e-73 280.0 227 64.8
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 1.1e-72 277.3 231 66.2
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 3.2e-72 275.8 236 63.6
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 3.2e-72 275.8 228 64.0
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 1.6e-71 273.5 230 63.0
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 3.5e-71 272.3 223 63.7
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 3.0e-70 269.2 239 62.3
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 3.0e-70 269.2 221 66.1
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 1.1e-69 267.3 219 63.9
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 1.1e-69 267.3 229 62.9
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.5e-69 266.9 221 66.1
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 7.3e-69 264.6 228 63.6
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 9.5e-69 264.2 222 64.0
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 9.5e-69 264.2 241 59.8
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 1.6e-68 263.5 218 64.2
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 4.7e-68 261.9 218 63.8
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.4e-67 260.4 227 60.4
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 3.1e-67 259.2 227 60.8
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 5.2e-67 258.5 227 60.4
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 8.9e-67 257.7 227 60.4
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 5.8e-66 255.0 229 61.6
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 1.3e-65 253.8 240 60.4
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 1.7e-65 253.4 229 59.4
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 2.9e-65 252.7 206 64.6
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 4.9e-65 251.9 238 59.2
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 6.4e-65 251.5 229 59.8
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 1.1e-64 250.8 262 54.6
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 2.4e-64 249.6 227 61.2
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 2.4e-64 249.6 222 60.8
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 3.2e-64 249.2 242 58.3
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 5.4e-64 248.4 226 60.6
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.7e-63 246.1 228 58.8
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 3.5e-63 245.7 258 55.0
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 4.6e-63 245.4 241 57.3
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 6.0e-63 245.0 237 58.6
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 2.3e-62 243.0 217 60.4
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 3.9e-62 242.3 223 57.8
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 5.0e-62 241.9 236 58.1
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 8.6e-62 241.1 235 59.6
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 1.1e-61 240.7 225 61.3
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 1.1e-61 240.7 229 58.1
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 2.5e-61 239.6 225 60.4
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 9.5e-61 237.7 227 57.7
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 1.1e-59 234.2 207 63.3
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 1.4e-59 233.8 218 57.8
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 3.4e-58 229.2 221 56.6
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 3.4e-58 229.2 219 57.5
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 3.4e-58 229.2 231 57.1
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 3.4e-58 229.2 231 56.3
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 5.8e-58 228.4 223 57.4
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 9.9e-58 227.6 175 68.0
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 9.9e-58 227.6 224 57.6
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 3.7e-57 225.7 224 56.7
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 4.9e-57 225.3 225 53.3
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 1.1e-56 224.2 233 54.5
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 1.9e-56 223.4 231 53.7
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 1.9e-56 223.4 231 53.7
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 4.1e-56 222.2 233 54.5
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 7.1e-56 221.5 219 55.7
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 7.1e-56 221.5 234 55.1
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 9.2e-56 221.1 221 54.8
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 1.2e-55 220.7 205 58.0
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 6.0e-55 218.4 233 54.1
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 2.3e-54 216.5 175 65.1
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 1.5e-53 213.8 179 64.2
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 1.4e-51 207.2 206 59.2
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 4.9e-49 198.7 230 51.7
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 5.4e-48 195.3 211 52.6
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 1.6e-47 193.7 227 50.2
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 2.7e-47 193.0 238 48.3
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 3.9e-46 189.1 214 51.4
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 8.7e-46 188.0 214 50.9
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 1.5e-45 187.2 229 50.2
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 3.3e-45 186.0 230 48.7
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 3.3e-45 186.0 230 48.7
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 4.7e-44 182.2 229 48.0
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 6.2e-44 181.8 204 50.0
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 2.6e-42 176.4 230 45.7
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 3.4e-42 176.0 236 44.9
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 5.8e-42 175.3 232 47.4
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 1.3e-41 174.1 234 46.2
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 1.3e-41 174.1 228 46.5
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 1.7e-41 173.7 228 46.9
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 2.9e-41 172.9 229 46.3
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 4.9e-41 172.2 218 47.7
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 4.9e-41 172.2 218 47.7
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 2.4e-40 169.9 218 47.2
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 4.6e-39 165.6 156 56.4
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 6.0e-39 165.2 119 72.3
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 2.3e-38 163.3 153 56.2
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 5.1e-38 162.2 297 39.4
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 7.3e-37 158.3 104 78.8
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 2.1e-31 140.2 97 70.1
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 6.7e-30 135.2 179 49.7
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 3.3e-29 132.9 164 46.3
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 4.9e-25 119.0 70 85.7
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 8.4e-25 118.2 136 47.1
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 3.2e-24 116.3 73 80.8
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 2.7e-23 113.2 153 45.1
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 2.8e-20 103.2 81 66.7
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 8.2e-20 101.7 202 37.6
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 1.8e-19 100.5 209 35.4
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 6.9e-19 98.6 65 76.9
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 1.0e-17 94.7 218 33.5
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 2.2e-17 93.6 122 47.5
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 3.2e-16 89.7 110 45.5
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 1.2e-15 87.8 56 82.1
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.6e-15 87.4 63 69.8
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 6.0e-15 85.5 146 37.7
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 5.9e-10 68.9 70 50.0
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 5.0e-09 65.9 104 39.4


User provided reference genes

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