Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 4.6e-121 438.0 227 100.0
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 4.7e-118 427.9 227 97.4
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 2.6e-108 395.6 227 87.7
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 2.6e-108 395.6 227 88.1
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 4.4e-108 394.8 227 89.0
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.3e-107 393.3 227 88.1
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.2e-107 392.5 227 89.0
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 4.9e-107 391.3 227 87.7
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.1e-106 390.2 227 86.3
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.1e-106 390.2 227 86.8
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.9e-106 389.4 228 87.7
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 4.1e-106 388.3 227 85.5
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 5.4e-106 387.9 227 86.3
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 5.4e-106 387.9 226 85.0
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 7.1e-106 387.5 227 84.1
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.6e-105 386.3 228 87.3
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.7e-105 385.6 227 85.0
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 2.7e-105 385.6 227 84.1
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 85.5
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 85.9
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 85.9
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.0e-104 383.6 228 86.4
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.3e-104 383.3 227 85.5
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 2.3e-104 382.5 227 83.7
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 3.0e-104 382.1 227 85.5
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 6.6e-104 380.9 219 88.1
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 84.6
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.1e-103 380.2 227 84.1
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 84.6
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 2.5e-103 379.0 226 85.0
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 5.6e-103 377.9 227 83.7
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 7.3e-103 377.5 227 85.0
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 83.7
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.2e-102 376.7 226 83.6
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 84.6
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 81.5
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 81.9
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 83.7
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 1.8e-101 372.9 227 85.0
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.8e-101 372.9 214 87.9
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 2.4e-101 372.5 227 81.5
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.4e-101 372.5 229 84.3
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 3.1e-101 372.1 217 86.6
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 3.1e-101 372.1 221 85.5
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 3.1e-101 372.1 221 85.5
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 5.2e-101 371.3 228 82.9
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 5.2e-101 371.3 219 84.9
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 6.8e-101 370.9 228 83.8
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 8.9e-101 370.5 226 82.3
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 8.9e-101 370.5 221 85.1
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 8.9e-101 370.5 222 83.8
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 8.9e-101 370.5 228 83.3
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 1.2e-100 370.2 226 82.3
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 1.2e-100 370.2 216 85.6
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 81.9
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.5e-100 369.8 222 84.2
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.5e-100 369.8 228 83.3
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 81.5
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.4e-100 368.6 222 83.3
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 3.4e-100 368.6 229 83.4
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 4.4e-100 368.2 221 84.6
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 5.8e-100 367.9 222 83.8
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 5.8e-100 367.9 227 81.9
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 9.9e-100 367.1 217 85.3
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 81.5
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.7e-99 366.3 226 81.4
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.7e-99 366.3 227 82.4
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.7e-99 366.3 227 80.6
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.2e-99 365.9 218 86.2
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.2e-99 365.9 217 84.3
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.2e-99 365.9 227 80.6
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.2e-99 365.9 227 81.5
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 2.9e-99 365.5 217 83.4
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 2.9e-99 365.5 229 83.0
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.1e-98 363.6 227 80.6
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.1e-98 363.6 220 84.1
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.4e-98 363.2 227 81.1
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 1.9e-98 362.8 218 84.4
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 2.4e-98 362.5 227 80.2
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.4e-98 362.5 233 81.5
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 2.4e-98 362.5 217 83.9
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 5.4e-98 361.3 227 81.1
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 9.3e-98 360.5 227 80.6
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 1.2e-97 360.1 220 82.3
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 1.2e-97 360.1 227 81.1
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 1.6e-97 359.8 228 80.3
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 4.6e-97 358.2 215 83.3
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 6.0e-97 357.8 217 82.0
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 6.0e-97 357.8 207 87.0
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 1.0e-96 357.1 227 80.2
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.3e-96 356.7 214 83.6
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.0e-96 355.5 214 84.1
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 3.9e-96 355.1 222 80.2
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 3.9e-96 355.1 227 79.3
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 6.6e-96 354.4 215 82.8
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 6.6e-96 354.4 214 80.4
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 8.7e-96 354.0 225 80.9
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.9e-95 352.8 214 83.6
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 4.3e-95 351.7 227 77.5
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.6e-94 349.7 208 85.1
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 1.6e-94 349.7 214 81.8
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 1.6e-94 349.7 206 85.0
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.1e-93 347.1 214 80.8
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.4e-93 346.7 214 81.8
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 3.1e-93 345.5 206 82.5
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 7.6e-92 340.9 205 83.4
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 7.6e-92 340.9 260 70.0
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 1.3e-91 340.1 214 78.0
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.3e-91 340.1 213 80.3
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 1.1e-90 337.0 227 77.1
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 1.4e-90 336.7 227 77.1
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.7e-89 332.4 210 82.4
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.1e-86 322.8 228 72.8
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.4e-85 320.1 195 82.1
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 1.8e-85 319.7 190 82.1
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.7e-83 313.2 191 81.7
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.7e-83 313.2 212 74.1
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 2.4e-82 309.3 227 71.8
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.3e-80 302.8 191 80.6
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 2.8e-78 295.8 214 72.0
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 5.8e-76 288.1 183 80.9
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 7.1e-74 281.2 164 86.6
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.5e-71 273.5 229 67.2
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 3.3e-71 272.3 164 82.3
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 4.3e-71 271.9 227 67.0
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 4.3e-71 271.9 216 65.3
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.6e-70 270.0 216 65.3
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.2e-68 263.8 193 70.5
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.4e-68 262.3 160 80.0
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 7.6e-68 261.2 196 68.9
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 6.5e-67 258.1 150 84.7
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 1.2e-65 253.8 197 70.6
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 7.9e-65 251.1 153 80.4
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 7.7e-60 234.6 237 53.2
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 3.8e-59 232.3 154 76.6
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.3e-54 217.2 215 53.5
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 2.2e-51 206.5 196 61.2
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.7e-49 199.5 131 73.3
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 3.6e-41 172.6 100 82.0
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.6e-39 166.4 115 74.8
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 7.5e-39 164.9 108 77.8
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.8e-30 136.3 109 67.0
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.4e-29 134.0 92 70.7
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.7e-28 129.8 89 74.2
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 1.1e-26 124.4 134 55.2
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 5.2e-24 115.5 113 61.1
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.5e-18 97.4 51 92.2
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 1.2e-17 94.4 63 69.8
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.3e-16 90.1 97 52.6
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.8e-13 80.5 47 87.2
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 1.8e-13 80.5 68 60.3
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.0e-12 77.0 114 43.0
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 2.5e-10 70.1 208 28.8
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.8e-08 63.9 63 57.1


User provided reference genes

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