Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.7e-213 745.7 388 100.0
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-180 635.6 390 86.2
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-157 559.7 390 77.9
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 5.9e-153 544.7 390 75.9
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-152 543.5 390 75.6
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.3e-123 447.2 393 64.1
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.1e-122 444.1 388 62.4
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 3.5e-121 439.1 391 61.6
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 3.9e-120 435.6 391 60.9
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 7.3e-119 431.4 391 61.6
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 6.2e-118 428.3 370 66.8
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 2.3e-117 426.4 388 60.1
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 2.3e-117 426.4 391 60.6
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 6.8e-117 424.9 391 59.8
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.5e-116 423.7 391 60.6
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 2.0e-116 423.3 391 60.4
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 2.0e-116 423.3 388 59.5
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 2.6e-116 422.9 391 59.1
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 7.5e-116 421.4 391 60.1
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 1.3e-115 420.6 391 60.1
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.9e-115 419.5 391 60.1
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.9e-115 419.5 391 59.6
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 3.7e-115 419.1 391 59.8
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 5.4e-114 415.2 392 60.7
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 3.5e-113 412.5 388 60.1
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 4.6e-113 412.1 391 59.8
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 6.0e-113 411.8 391 58.1
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.0e-112 411.0 399 58.9
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.0e-112 411.0 392 58.9
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.3e-112 410.6 391 58.6
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 5.1e-112 408.7 392 58.4
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 8.6e-112 407.9 390 58.2
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 3.3e-111 406.0 391 58.1
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 1.2e-110 404.1 393 58.3
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.6e-110 403.7 392 57.7
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.1e-110 403.3 383 59.3
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 3.6e-110 402.5 374 59.6
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 4.7e-110 402.1 392 57.4
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.1e-109 401.0 391 57.8
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.8e-109 400.2 391 57.5
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 2.4e-109 399.8 391 56.8
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 2.4e-109 399.8 391 57.0
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 6.8e-109 398.3 391 57.3
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 2.0e-108 396.7 390 56.4
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 2.0e-108 396.7 391 58.1
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.6e-108 396.4 388 56.7
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 2.6e-108 396.4 390 56.4
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 2.6e-108 396.4 390 56.4
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 3.4e-108 396.0 391 56.5
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 4.4e-108 395.6 390 56.2
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 5.8e-108 395.2 390 56.4
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 5.8e-108 395.2 390 56.4
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 5.8e-108 395.2 390 56.4
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 9.9e-108 394.4 391 57.8
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.3e-107 394.0 391 56.8
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.3e-107 394.0 390 55.6
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.7e-107 393.7 390 56.7
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 2.9e-107 392.9 388 56.2
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 8.4e-107 391.3 390 56.4
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 8.4e-107 391.3 388 56.4
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 8.4e-107 391.3 388 55.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.1e-106 391.0 390 55.9
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.4e-106 389.8 391 57.3
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.2e-106 389.4 393 57.5
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 3.2e-106 389.4 403 56.6
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 3.2e-106 389.4 391 56.5
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 4.2e-106 389.0 388 54.4
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 4.2e-106 389.0 391 56.5
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 5.4e-106 388.7 392 55.9
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.6e-105 387.1 391 56.3
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 7.8e-105 384.8 391 56.5
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.0e-104 384.4 390 55.4
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 3.0e-104 382.9 392 56.1
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 3.0e-104 382.9 388 54.1
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 3.9e-104 382.5 388 54.4
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 3.9e-104 382.5 388 54.1
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 8.7e-104 381.3 388 55.2
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.1e-103 380.9 387 55.3
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.5e-103 379.8 388 53.6
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 4.3e-103 379.0 388 53.4
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 7.3e-103 378.3 398 55.0
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.6e-103 377.9 391 55.0
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.6e-103 377.9 391 55.0
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.3e-102 377.5 390 54.4
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 3.6e-102 375.9 383 54.3
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 1.1e-101 374.4 386 56.2
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.4e-101 373.2 388 53.6
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 3.1e-101 372.9 388 53.9
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.2e-100 370.9 387 53.2
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 2.0e-100 370.2 390 54.9
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 3.4e-100 369.4 388 52.8
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 9.9e-100 367.9 391 53.2
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 4.2e-98 362.5 390 54.1
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 9.3e-98 361.3 387 52.2
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 4.6e-97 359.0 390 53.1
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 2.3e-96 356.7 390 54.6
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 3.6e-94 349.4 387 52.2
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 6.2e-94 348.6 382 53.9
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.0e-93 344.7 375 51.7
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 1.5e-92 344.0 303 61.7
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.0e-92 343.6 389 51.2
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 4.5e-92 342.4 389 50.9
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 7.6e-92 341.7 390 50.0
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 9.9e-92 341.3 389 51.2
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 2.1e-89 333.6 398 50.5
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 5.1e-88 328.9 400 48.0
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.5e-87 327.4 421 48.0
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.3e-86 324.3 253 66.8
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 4.0e-85 319.3 388 46.6
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.2e-84 317.8 405 46.9
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.6e-84 316.6 345 53.0
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 3.8e-83 312.8 387 48.3
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.5e-79 300.8 291 56.0
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 5.5e-74 282.3 402 43.0
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 8.2e-54 215.3 384 38.5
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.4e-53 214.5 408 35.5
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 2.4e-53 213.8 388 37.4
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 7.0e-53 212.2 219 52.5
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.5e-50 202.6 388 37.6
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-46 190.7 186 62.4
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 2.5e-42 177.2 558 31.0
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 8.3e-30 135.6 390 30.0
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 7.7e-28 129.0 402 28.6
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.2e-23 115.2 388 27.3
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.4e-23 113.2 122 51.6
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 7.0e-21 105.9 110 52.7
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 8.6e-19 99.0 401 26.7
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.1e-18 98.6 237 30.8
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-16 91.3 92 58.7
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 3.7e-14 83.6 75 58.7
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 1.7e-11 74.7 154 34.4
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.1e-08 65.5 185 29.7


User provided reference genes

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