Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-42 176.0 87 100.0
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 2.0e-24 115.5 67 88.1
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 4.9e-23 110.9 83 69.9
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 3.0e-20 101.7 65 76.9
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 3.3e-19 98.2 65 69.2
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 7.3e-19 97.1 65 70.8
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.1e-18 95.5 65 70.8
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 3.6e-18 94.7 60 73.3
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 4.7e-18 94.4 60 76.7
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 8.1e-18 93.6 65 66.2
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.4e-17 92.8 65 72.3
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 1.4e-17 92.8 59 74.6
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.4e-17 92.8 65 69.2
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.4e-17 92.8 64 70.3
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 4.0e-17 91.3 63 69.8
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 4.0e-17 91.3 65 66.2
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 5.2e-17 90.9 67 64.2
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 6.8e-17 90.5 65 66.2
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 8.9e-17 90.1 65 67.7
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 8.9e-17 90.1 60 75.0
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 8.9e-17 90.1 66 65.2
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.2e-16 89.7 62 69.4
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.2e-16 89.7 62 69.4
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.2e-16 89.7 62 69.4
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.2e-16 89.7 55 78.2
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.2e-16 89.7 67 64.2
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 2.0e-16 89.0 62 67.7
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 2.0e-16 89.0 62 67.7
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 2.6e-16 88.6 62 64.5
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 2.6e-16 88.6 55 78.2
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 3.4e-16 88.2 61 68.9
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 3.4e-16 88.2 55 76.4
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 3.4e-16 88.2 60 68.3
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 4.4e-16 87.8 55 76.4
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 4.4e-16 87.8 60 71.7
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 4.4e-16 87.8 62 72.6
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 5.8e-16 87.4 60 73.3
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 7.6e-16 87.0 60 71.7
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 9.9e-16 86.7 58 72.4
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 9.9e-16 86.7 65 64.6
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 9.9e-16 86.7 59 71.2
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.3e-15 86.3 58 70.7
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.7e-15 85.9 65 63.1
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.7e-15 85.9 58 72.4
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 2.2e-15 85.5 65 63.1
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 2.2e-15 85.5 61 68.9
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 2.9e-15 85.1 62 66.1
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.8e-15 84.7 55 72.7
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.8e-15 84.7 55 72.7
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.8e-15 84.7 55 72.7
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.8e-15 84.7 55 72.7
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 6.4e-15 84.0 65 61.5
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 6.4e-15 84.0 60 65.0
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 8.4e-15 83.6 62 62.9
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.1e-14 83.2 65 63.1
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 1.4e-14 82.8 65 63.1
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.4e-14 82.8 55 74.5
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.4e-14 82.8 58 69.0
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.9e-14 82.4 58 67.2
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.9e-14 82.4 58 67.2
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.9e-14 82.4 58 67.2
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.9e-14 82.4 65 63.1
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.9e-14 82.4 74 62.2
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.4e-14 82.0 55 72.7
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.4e-14 82.0 64 65.6
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 3.2e-14 81.6 63 66.7
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.2e-14 81.6 65 61.5
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 3.2e-14 81.6 61 63.9
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.2e-14 81.6 55 70.9
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 3.2e-14 81.6 58 67.2
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.2e-14 81.3 55 74.5
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.2e-14 81.3 55 74.5
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 4.2e-14 81.3 55 74.5
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 4.2e-14 81.3 55 74.5
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 5.4e-14 80.9 65 61.5
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 7.1e-14 80.5 69 59.4
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 7.1e-14 80.5 55 72.7
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 7.1e-14 80.5 65 61.5
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.2e-13 79.7 60 63.3
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.6e-13 79.3 65 58.5
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 1.6e-13 79.3 62 64.5
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 3.5e-13 78.2 60 63.3
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 3.5e-13 78.2 64 64.1
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 1.3e-12 76.3 60 65.0
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-12 76.3 57 66.7
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 3.9e-12 74.7 65 58.5
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 3.9e-12 74.7 60 63.3
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.1e-11 73.2 67 56.7
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 1.5e-11 72.8 57 64.9
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.9e-11 72.4 55 67.3
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 2.5e-11 72.0 60 55.0
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 4.3e-11 71.2 55 67.3
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 4.3e-11 71.2 65 60.0
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.3e-10 69.7 65 53.8
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.3e-10 69.7 57 63.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.3e-10 69.7 57 63.2
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 2.1e-10 68.9 57 63.2
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 2.1e-10 68.9 57 63.2
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 2.1e-10 68.9 57 63.2
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 2.1e-10 68.9 57 63.2
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 2.1e-10 68.9 57 63.2
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 2.1e-10 68.9 57 63.2
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 2.1e-10 68.9 57 63.2
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 2.1e-10 68.9 57 63.2
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 6.2e-10 67.4 54 61.1
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.4e-09 65.5 53 62.3
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 2.4e-09 65.5 54 57.4
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 6.9e-09 63.9 126 34.9
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 2.0e-08 62.4 63 54.0
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 3.4e-08 61.6 36 80.6
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.3e-07 59.7 52 55.8
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.9e-06 55.8 57 49.1
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 7.1e-06 53.9 35 71.4
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 9.3e-06 53.5 144 29.9


User provided reference genes

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