Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.0e-254 881.3 436 100.0
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 9.8e-189 663.7 414 82.1
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-188 663.3 409 83.1
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 2.9e-188 662.1 398 86.4
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 8.9e-182 640.6 390 86.2
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 5.3e-158 561.6 417 70.3
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 2.9e-156 555.8 412 68.2
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 7.1e-155 551.2 415 67.7
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 2.7e-154 549.3 415 67.0
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.5e-152 543.5 415 66.3
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 9.6e-152 540.8 415 67.2
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 2.8e-151 539.3 415 67.0
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 3.6e-151 538.9 415 67.0
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 6.2e-151 538.1 415 66.7
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.8e-150 536.6 412 65.8
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.9e-150 534.6 415 66.5
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 6.9e-150 534.6 412 65.5
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 9.0e-150 534.3 415 66.3
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.2e-149 533.9 415 65.8
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.0e-149 533.1 415 65.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 2.0e-149 533.1 416 67.5
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 4.5e-149 531.9 415 66.0
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.5e-149 531.9 415 66.3
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.3e-148 530.4 415 65.1
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 4.2e-147 525.4 410 65.9
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 4.2e-147 525.4 412 66.5
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 5.4e-147 525.0 414 65.2
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 9.3e-147 524.2 414 65.9
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 2.1e-146 523.1 415 65.8
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.7e-146 522.7 415 65.3
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.6e-146 521.9 423 64.8
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.3e-145 520.4 407 66.6
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 3.0e-145 519.2 415 64.3
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 8.7e-145 517.7 416 64.2
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.5e-144 516.2 412 63.8
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 2.5e-144 516.2 415 64.1
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 7.4e-144 514.6 416 63.9
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 9.6e-144 514.2 416 63.7
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.3e-143 513.8 415 64.1
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 1.6e-143 513.5 412 63.6
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.6e-143 513.5 401 65.6
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 2.1e-143 513.1 416 64.7
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 2.8e-143 512.7 415 63.6
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.8e-143 511.9 412 63.8
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 4.8e-143 511.9 418 64.1
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.4e-142 510.4 415 63.1
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.1e-142 509.2 416 63.0
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 3.1e-142 509.2 415 64.3
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 6.9e-142 508.1 415 64.6
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 9.0e-142 507.7 415 64.8
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 9.0e-142 507.7 414 62.6
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 5.8e-141 505.0 414 61.8
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 5.8e-141 505.0 415 63.9
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 5.8e-141 505.0 415 63.9
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 7.6e-141 504.6 414 61.8
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 7.6e-141 504.6 414 61.8
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 7.6e-141 504.6 415 63.9
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.0e-140 504.2 414 62.6
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.3e-140 503.8 414 61.6
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.3e-140 503.8 416 62.5
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 1.7e-140 503.4 414 61.8
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.7e-140 503.4 414 61.8
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.7e-140 503.4 427 63.0
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 2.2e-140 503.1 414 61.8
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 2.9e-140 502.7 412 61.7
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 2.9e-140 502.7 415 63.6
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 3.8e-140 502.3 412 61.2
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.1e-139 500.7 414 62.3
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 4.2e-139 498.8 414 61.6
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.6e-138 496.9 417 63.3
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 2.1e-138 496.5 416 62.7
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 6.0e-138 495.0 414 61.6
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.8e-137 493.4 414 61.1
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.8e-137 493.4 415 61.7
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.8e-137 493.4 415 61.7
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 2.3e-137 493.0 412 59.7
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 3.0e-137 492.7 411 61.3
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 8.7e-137 491.1 412 61.2
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 1.5e-136 490.3 412 60.2
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.5e-136 490.3 412 59.7
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 1.9e-136 490.0 412 59.7
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 4.3e-136 488.8 422 60.9
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 4.3e-136 488.8 412 59.2
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 4.3e-136 488.8 407 61.2
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 6.2e-135 485.0 412 60.2
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.8e-134 483.4 414 61.6
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 5.3e-134 481.9 412 59.2
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 6.9e-134 481.5 366 71.6
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 1.5e-133 480.3 412 59.2
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 2.0e-133 479.9 414 62.3
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.3e-132 477.2 414 61.1
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 2.2e-132 476.5 426 57.5
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 4.2e-131 472.2 411 58.4
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 9.3e-131 471.1 424 58.3
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 2.7e-130 469.5 406 61.6
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 3.0e-129 466.1 411 59.6
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.5e-128 463.8 411 57.7
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 3.1e-126 456.1 413 58.6
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 6.9e-126 454.9 413 57.6
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.2e-125 454.1 413 58.1
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 1.7e-124 450.3 404 59.4
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 2.2e-124 449.9 414 56.8
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 5.5e-123 445.3 415 57.6
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 7.2e-123 444.9 445 55.5
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 3.6e-122 442.6 422 56.9
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 8.8e-121 438.0 425 54.8
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.8e-118 430.3 424 54.5
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.9e-117 425.2 369 59.6
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.1e-115 421.0 411 53.5
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-108 397.5 371 56.3
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.7e-108 397.1 427 50.6
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.5e-99 365.5 279 66.3
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 7.2e-99 365.2 414 48.6
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 2.7e-98 363.2 255 71.0
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.4e-86 324.3 433 43.4
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 4.5e-85 319.3 413 45.5
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 7.7e-85 318.5 423 44.2
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.9e-76 290.0 431 40.8
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 5.6e-67 259.2 182 76.4
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 6.2e-66 255.8 248 54.0
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 7.1e-62 242.3 558 34.9
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 3.5e-53 213.4 437 33.4
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 5.1e-52 209.5 412 34.5
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 3.4e-48 196.8 408 32.4
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 9.3e-38 162.2 355 33.8
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 3.5e-37 160.2 317 34.4
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 6.6e-36 156.0 233 38.6
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-32 145.2 118 69.5
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.3e-30 135.6 128 55.5
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 1.2e-29 135.2 103 64.1
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 1.3e-23 115.2 194 38.1
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 7.9e-21 105.9 87 59.8
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.7e-13 80.9 287 24.4
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 5.7e-11 73.2 49 71.4
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 4.8e-10 70.1 92 54.3


User provided reference genes

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