Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 9.3e-209 729.9 363 100.0
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.6e-205 719.2 363 98.3
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-188 663.3 409 83.1
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-185 653.3 359 91.4
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.5e-161 573.2 373 77.5
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 3.0e-159 565.5 368 75.8
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 9.7e-158 560.5 371 74.4
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 3.7e-157 558.5 371 73.9
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 5.9e-155 551.2 371 74.1
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 7.7e-155 550.8 371 74.1
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 7.7e-155 550.8 371 73.0
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.7e-154 549.7 390 75.9
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 2.2e-154 549.3 371 73.6
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 2.9e-154 548.9 371 73.6
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 2.9e-154 548.9 368 73.1
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 3.2e-153 545.4 371 73.3
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.5e-153 544.7 371 73.0
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 5.5e-153 544.7 371 72.8
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 9.4e-153 543.9 371 72.5
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 2.7e-152 542.3 371 72.0
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.6e-152 542.0 371 72.8
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.0e-151 540.4 371 72.5
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.4e-151 540.0 371 72.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.4e-151 540.0 372 73.9
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 2.6e-150 535.8 368 71.2
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 3.4e-150 535.4 370 72.2
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 7.5e-150 534.3 371 72.5
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.3e-149 533.5 368 73.6
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.7e-149 531.9 379 71.0
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 3.7e-149 531.9 373 72.1
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.6e-147 526.6 372 71.0
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 5.9e-147 524.6 354 73.2
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 7.7e-147 524.2 372 70.4
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 2.9e-146 522.3 371 71.2
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 2.9e-146 522.3 371 70.4
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 6.5e-146 521.2 371 70.1
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.5e-145 520.0 370 69.5
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.5e-145 519.2 372 69.6
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 3.3e-145 518.8 370 69.2
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 3.3e-145 518.8 370 69.2
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 3.3e-145 518.8 370 69.2
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 3.3e-145 518.8 371 70.4
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 5.5e-145 518.1 371 69.0
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 7.2e-145 517.7 368 69.6
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 7.2e-145 517.7 370 69.2
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 7.2e-145 517.7 370 69.2
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 7.2e-145 517.7 371 70.1
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 9.5e-145 517.3 370 69.5
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 1.2e-144 516.9 368 69.6
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.6e-144 516.5 370 70.0
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.6e-144 516.5 371 70.6
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.6e-144 516.5 370 69.2
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 2.1e-144 516.2 372 69.4
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 2.1e-144 516.2 371 69.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.6e-144 515.4 368 69.8
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 3.6e-144 515.4 368 68.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 6.1e-144 514.6 371 70.4
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 8.0e-144 514.2 371 70.4
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.0e-143 513.8 371 70.6
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.4e-143 513.5 370 69.7
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.3e-143 512.7 384 68.2
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 3.0e-143 512.3 371 70.1
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 4.0e-143 511.9 383 69.2
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 5.2e-143 511.5 376 69.7
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 5.2e-143 511.5 372 68.8
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 6.8e-143 511.1 368 67.7
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.2e-142 510.4 371 69.8
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.5e-142 510.0 370 68.6
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 5.7e-142 508.1 370 68.6
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 7.5e-142 507.7 395 65.3
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.3e-141 504.6 373 68.9
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 2.4e-140 502.7 372 68.3
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 3.1e-140 502.3 368 67.4
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 9.2e-140 500.7 368 66.6
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.6e-139 500.0 320 80.9
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.6e-139 500.0 368 65.8
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.0e-139 499.6 363 68.0
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 2.0e-139 499.6 368 65.8
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 3.5e-139 498.8 378 67.2
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 3.5e-139 498.8 367 66.8
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 4.5e-139 498.4 371 67.7
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 4.5e-139 498.4 370 68.4
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 4.5e-139 498.4 368 65.5
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.0e-138 495.0 371 67.1
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.0e-138 495.0 371 67.1
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 5.0e-138 495.0 370 68.4
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.1e-137 493.8 368 64.4
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 3.3e-137 492.3 368 66.3
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.1e-136 489.6 368 65.2
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 2.8e-136 489.2 368 64.9
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 2.3e-135 486.1 371 65.2
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 8.9e-135 484.2 370 67.0
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.2e-134 483.8 370 68.1
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 3.4e-134 482.3 367 64.6
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.4e-132 476.9 367 65.9
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 3.2e-132 475.7 353 68.0
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 2.7e-131 472.6 362 66.6
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.7e-130 469.9 369 64.0
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.3e-130 469.5 367 62.9
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 3.9e-130 468.8 369 64.2
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.9e-129 466.5 369 64.2
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 5.2e-127 458.4 370 61.6
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 9.8e-126 454.1 378 63.0
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 4.9e-125 451.8 371 63.3
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.4e-124 450.3 380 60.8
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.3e-122 443.7 414 57.5
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 2.3e-122 443.0 385 59.5
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.5e-121 437.6 325 67.7
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 3.5e-115 419.1 367 58.0
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.5e-113 413.7 332 63.3
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 2.9e-109 399.4 383 54.6
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 5.6e-105 385.2 364 56.3
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 3.1e-103 379.4 237 77.2
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.3e-97 359.4 278 65.1
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.1e-87 327.8 369 48.5
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 4.0e-87 325.9 365 49.9
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 3.8e-85 319.3 389 45.0
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 7.4e-81 305.1 406 44.3
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.6e-67 259.6 230 57.8
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.0e-66 258.1 156 84.6
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 3.3e-57 226.5 249 52.2
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 6.5e-53 212.2 383 35.8
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.2e-51 208.0 379 35.9
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 2.7e-51 206.8 368 35.6
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 5.7e-41 172.6 337 35.9
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 2.9e-37 160.2 288 36.8
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 3.6e-35 153.3 207 41.5
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-31 141.7 92 81.5
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.5e-30 136.3 102 67.6
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 1.3e-29 134.8 100 66.0
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 2.5e-20 104.0 177 37.3
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 5.6e-20 102.8 82 62.2
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.4e-15 87.4 258 28.3
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 7.8e-14 82.4 65 78.5
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 4.7e-11 73.2 49 71.4


User provided reference genes

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