Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 0.0e+00 1095.5 545 100.0
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 3.4e-215 751.9 493 79.5
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.4e-195 686.8 547 63.8
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.0e-195 685.6 550 65.6
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.1e-194 683.7 548 63.9
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.0e-191 672.9 546 62.6
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 2.9e-190 669.1 549 62.5
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 3.8e-190 668.7 548 63.0
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 8.5e-190 667.5 547 62.9
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.4e-189 666.8 548 62.8
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.7e-188 662.5 398 86.4
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.4e-187 660.2 547 62.3
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 2.6e-186 656.0 549 62.1
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 9.7e-186 654.1 359 91.4
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.2e-185 652.9 547 61.8
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 2.8e-185 652.5 548 62.0
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 4.8e-185 651.7 547 62.0
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.4e-184 650.2 549 62.7
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.8e-184 649.8 545 60.4
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 3.5e-183 645.6 552 62.1
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 7.7e-183 644.4 547 61.6
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.3e-182 643.7 547 62.3
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.7e-182 643.3 555 60.9
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.7e-182 643.3 609 56.8
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 1.1e-181 640.6 548 60.9
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 2.5e-181 639.4 544 61.9
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.8e-179 633.3 547 60.3
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 6.7e-179 631.3 548 59.9
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 1.5e-178 630.2 547 60.0
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.3e-177 627.1 549 59.9
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.7e-177 626.7 512 64.1
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 4.8e-177 625.2 547 60.1
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.8e-176 623.2 547 59.8
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 2.4e-176 622.9 549 60.8
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.3e-176 621.7 512 63.1
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 7.0e-176 621.3 512 62.9
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 9.1e-176 620.9 526 62.0
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.2e-175 620.5 631 53.7
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.6e-175 620.2 560 59.5
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 5.9e-175 618.2 549 59.2
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 7.7e-175 617.8 550 59.1
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.2e-174 616.3 512 62.3
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.1e-173 614.0 548 59.3
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.9e-173 613.2 519 60.7
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.9e-173 613.2 549 59.9
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 3.2e-173 612.5 519 60.7
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.2e-173 612.5 547 58.5
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.2e-173 612.5 547 58.5
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 5.5e-173 611.7 550 58.9
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 7.2e-173 611.3 515 60.6
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 9.4e-173 610.9 519 60.9
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 9.4e-173 610.9 545 57.2
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 1.2e-172 610.5 541 59.5
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.6e-172 610.1 571 57.3
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.6e-172 610.1 545 56.7
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.6e-172 610.1 546 59.2
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.6e-172 610.1 549 58.8
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 8.0e-172 607.8 562 58.0
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 8.0e-172 607.8 554 58.8
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.0e-171 607.4 548 58.2
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 6.8e-171 604.7 533 59.5
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.2e-170 604.0 544 56.8
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 2.0e-170 603.2 549 57.6
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 7.5e-170 601.3 545 56.7
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 4.8e-169 598.6 578 58.0
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 6.3e-169 598.2 547 57.8
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 8.3e-169 597.8 545 56.0
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.1e-168 597.4 547 57.6
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.4e-168 597.0 545 56.1
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 4.1e-168 595.5 527 58.8
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 3.5e-167 592.4 521 60.8
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 4.5e-167 592.0 545 55.8
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.0e-166 590.9 535 58.1
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.3e-166 590.5 521 58.3
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 5.0e-166 588.6 539 59.4
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 6.5e-166 588.2 545 56.1
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 8.6e-166 587.8 528 58.0
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.1e-165 587.4 513 58.9
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.1e-165 587.4 544 56.2
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.5e-165 587.0 513 58.9
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.5e-165 587.0 513 58.9
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 2.5e-165 586.3 513 58.7
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 3.3e-165 585.9 513 58.9
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 3.3e-165 585.9 513 58.9
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 5.5e-165 585.1 516 58.5
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 6.1e-164 581.6 545 55.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 3.0e-163 579.3 490 61.4
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 1.2e-162 577.4 556 55.9
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 6.3e-161 571.6 538 56.7
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 5.9e-159 565.1 535 55.1
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 7.8e-159 564.7 390 77.9
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.1e-157 560.8 547 54.7
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.5e-157 560.5 547 53.9
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 4.3e-157 558.9 515 56.3
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 2.8e-156 556.2 486 57.6
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 8.0e-156 554.7 544 54.0
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.3e-155 553.1 547 53.6
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.0e-154 550.1 547 53.9
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 2.2e-153 546.6 547 55.0
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 6.4e-153 545.0 528 54.0
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 6.2e-148 528.5 539 54.0
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 5.2e-147 525.4 479 57.6
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.5e-146 523.9 565 51.2
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 4.4e-146 522.3 578 50.7
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.1e-144 517.7 343 72.6
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.4e-144 517.3 468 57.5
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 8.1e-140 501.5 414 63.3
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.0e-138 496.9 520 51.5
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-137 493.4 327 79.2
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 3.6e-132 476.1 540 49.1
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 6.0e-127 458.8 500 50.2
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.9e-120 437.2 373 59.0
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.2e-119 434.5 514 47.7
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.8e-102 377.5 538 40.5
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.4e-99 367.9 530 41.7
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.5e-98 362.8 276 63.8
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 5.8e-98 362.5 492 42.7
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.1e-91 341.7 552 39.7
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.4e-91 341.3 406 47.8
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 5.7e-77 292.7 744 32.5
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.6e-69 267.3 156 87.8
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 2.3e-62 244.2 525 33.3
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 4.8e-60 236.5 515 32.8
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 7.7e-50 202.6 356 34.6
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 8.6e-49 199.1 244 48.0
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 4.7e-47 193.4 501 32.3
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 2.0e-45 188.0 537 29.1
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 2.1e-39 167.9 208 43.3
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 4.4e-37 160.2 226 44.2
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-36 158.7 92 88.0
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.9e-33 147.1 102 67.6
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 1.3e-25 122.1 113 59.3
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 1.2e-23 115.5 301 32.2
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.8e-23 114.4 67 88.1
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.0e-17 94.4 90 60.0
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.6e-13 81.3 236 28.4
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-12 78.2 66 72.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 7.1e-11 73.2 49 71.4
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.0e-09 67.8 53 58.5


User provided reference genes

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