Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-125 453.0 229 100.0
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 2.0e-71 273.1 259 63.7
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-69 267.3 156 87.8
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-67 259.6 182 76.4
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 5.0e-67 258.5 156 84.6
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 3.6e-65 252.3 156 82.7
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.6e-60 236.9 156 79.5
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.3e-59 233.8 157 75.8
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 3.8e-59 232.3 157 73.2
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.1e-58 230.7 163 71.8
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.1e-58 230.7 163 71.8
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.5e-58 230.3 163 70.6
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.2e-58 229.2 163 71.2
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.5e-58 228.4 163 71.2
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 5.5e-58 228.4 157 73.9
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 7.2e-58 228.0 157 73.9
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 7.2e-58 228.0 164 70.7
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 9.4e-58 227.6 164 71.3
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.4e-58 227.6 163 71.2
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.2e-57 227.3 157 73.2
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 1.6e-57 226.9 157 73.2
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.1e-57 226.5 164 70.7
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.1e-57 226.5 164 72.0
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 2.7e-57 226.1 164 72.0
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 3.6e-57 225.7 163 70.6
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 3.6e-57 225.7 164 71.3
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 4.7e-57 225.3 164 70.7
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 4.7e-57 225.3 164 70.1
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.0e-56 224.2 157 72.0
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.4e-56 223.8 157 72.6
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.4e-56 223.8 157 73.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.8e-56 223.4 160 70.0
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 2.3e-56 223.0 157 71.3
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.3e-56 223.0 163 69.9
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 2.3e-56 223.0 156 71.8
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.0e-56 222.6 158 71.5
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 4.0e-56 222.2 157 70.7
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.0e-56 222.2 158 70.9
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 4.0e-56 222.2 158 70.9
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 4.0e-56 222.2 156 71.2
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 4.0e-56 222.2 164 69.5
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 4.0e-56 222.2 157 71.3
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 5.2e-56 221.9 164 69.5
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 5.2e-56 221.9 157 71.3
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 6.8e-56 221.5 157 71.3
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 8.8e-56 221.1 157 70.7
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.2e-55 220.7 158 72.2
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.5e-55 220.3 157 72.0
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 1.5e-55 220.3 156 69.2
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.0e-55 219.9 157 71.3
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.0e-55 219.9 164 68.3
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 2.0e-55 219.9 157 71.3
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 2.6e-55 219.5 158 72.8
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 3.4e-55 219.2 156 69.2
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 4.4e-55 218.8 157 71.3
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 5.7e-55 218.4 155 71.0
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 7.5e-55 218.0 164 68.9
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 7.5e-55 218.0 164 68.3
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 9.8e-55 217.6 157 70.1
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 4.8e-54 215.3 164 68.9
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 6.3e-54 214.9 164 68.3
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 6.3e-54 214.9 163 67.5
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 6.3e-54 214.9 157 69.4
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 6.3e-54 214.9 157 69.4
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.1e-53 214.2 157 69.4
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.4e-53 213.8 157 68.2
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.4e-53 213.8 163 68.1
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.4e-53 213.0 164 68.3
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 9.1e-53 211.1 156 69.2
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.2e-52 210.7 157 67.5
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 2.7e-52 209.5 157 68.2
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 4.5e-52 208.8 159 69.2
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 5.9e-52 208.4 158 67.1
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 7.7e-52 208.0 157 68.8
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 7.7e-52 208.0 157 69.4
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 7.7e-52 208.0 165 67.3
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.3e-51 207.2 165 67.3
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.3e-51 206.5 156 64.1
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.5e-50 203.0 188 60.1
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 5.5e-50 201.8 156 65.4
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.6e-49 200.3 156 63.5
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 2.1e-49 199.9 156 63.5
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 2.1e-49 199.9 156 63.5
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 2.1e-49 199.9 156 63.5
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 2.8e-49 199.5 156 63.5
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 4.7e-49 198.7 156 63.5
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 4.7e-49 198.7 156 63.5
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 8.0e-49 198.0 185 58.4
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 3.0e-48 196.1 156 64.1
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 6.8e-48 194.9 159 62.3
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-47 194.1 186 62.4
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 1.2e-47 194.1 158 62.7
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 2.6e-47 193.0 156 63.5
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 2.6e-47 193.0 156 64.7
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 3.4e-47 192.6 130 74.6
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 4.4e-47 192.2 156 62.8
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 2.2e-46 189.9 156 60.9
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.2e-46 189.9 156 62.2
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 2.8e-46 189.5 155 63.9
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 4.9e-46 188.7 156 62.8
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 8.3e-46 188.0 157 61.1
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 8.3e-46 188.0 202 54.5
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.1e-45 187.6 156 61.5
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 1.1e-45 187.6 159 61.6
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.1e-45 187.6 154 63.6
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.4e-45 187.2 157 59.2
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.1e-45 185.7 157 59.2
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.2e-44 184.1 159 60.4
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 3.5e-44 182.6 156 60.3
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 2.5e-42 176.4 162 58.0
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 9.5e-42 174.5 117 75.2
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 1.2e-39 167.5 163 57.1
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.6e-39 166.4 154 55.8
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-38 164.1 136 62.5
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 7.0e-37 158.3 110 72.7
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 3.9e-35 152.5 126 59.5
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 3.3e-34 149.4 180 47.8
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 3.1e-32 142.9 163 48.5
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.3e-26 122.5 212 37.7
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 2.6e-23 113.2 156 41.7
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.6e-20 102.4 77 63.6
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 3.9e-19 99.4 116 44.8
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.1e-18 97.8 115 42.6
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.2e-17 94.4 163 37.4
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 8.9e-16 88.2 110 42.7
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 2.2e-14 83.6 115 40.9
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.1e-10 71.2 49 69.4
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.1e-10 71.2 55 65.5
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 1.5e-07 60.8 54 64.8
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.9e-06 56.6 33 75.8


User provided reference genes

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