Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 3.6e-42 174.5 88 100.0
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-14 82.8 65 78.5
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 7.2e-14 80.5 65 76.9
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-13 79.7 66 72.7
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 6.1e-13 77.4 66 65.2
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 6.1e-13 77.4 66 68.2
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 2.3e-12 75.5 66 66.7
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 3.0e-12 75.1 68 61.8
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 5.1e-12 74.3 66 60.6
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 6.7e-12 73.9 66 62.1
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 8.8e-12 73.6 66 62.1
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 8.8e-12 73.6 68 60.3
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.1e-11 73.2 66 62.1
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.5e-11 72.8 66 62.1
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.5e-11 72.8 66 62.1
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.0e-11 72.4 66 62.1
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 2.0e-11 72.4 66 60.6
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 2.0e-11 72.4 68 60.3
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.0e-11 72.4 66 62.1
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 2.0e-11 72.4 66 62.1
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 2.0e-11 72.4 66 66.7
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.5e-11 72.0 66 60.6
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 2.5e-11 72.0 66 60.6
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 2.5e-11 72.0 66 60.6
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-11 72.0 92 54.3
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 2.5e-11 72.0 66 63.6
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 3.3e-11 71.6 66 60.6
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-11 71.6 66 60.6
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-11 71.6 66 60.6
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-11 71.6 66 60.6
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-11 71.6 66 60.6
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 3.3e-11 71.6 66 62.1
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 3.3e-11 71.6 68 58.8
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 3.3e-11 71.6 66 60.6
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 4.3e-11 71.2 66 60.6
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 4.3e-11 71.2 66 62.1
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 4.3e-11 71.2 66 62.1
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 4.3e-11 71.2 66 63.6
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 4.3e-11 71.2 66 63.6
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 5.7e-11 70.9 68 60.3
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 5.7e-11 70.9 66 60.6
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 5.7e-11 70.9 66 62.1
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 7.4e-11 70.5 66 60.6
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 7.4e-11 70.5 66 60.6
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 9.7e-11 70.1 68 58.8
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.7e-11 70.1 66 59.1
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 9.7e-11 70.1 66 60.6
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 9.7e-11 70.1 66 59.1
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.3e-10 69.7 66 62.1
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.7e-10 69.3 66 59.1
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 1.7e-10 69.3 66 60.6
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 2.8e-10 68.6 66 60.6
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 2.8e-10 68.6 66 60.6
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 2.8e-10 68.6 66 59.1
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 3.7e-10 68.2 66 62.1
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 3.7e-10 68.2 66 59.1
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 4.8e-10 67.8 64 60.9
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 6.3e-10 67.4 66 59.1
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.1e-09 66.6 66 59.1
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-09 66.6 64 65.6
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.1e-09 66.6 65 60.0
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.1e-09 66.6 66 57.6
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.1e-09 66.6 66 57.6
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.4e-09 66.2 66 57.6
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 1.4e-09 66.2 66 62.1
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.4e-09 66.2 66 60.6
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.4e-09 66.2 66 60.6
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.4e-09 66.2 66 60.6
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-09 66.2 63 63.5
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.4e-09 66.2 66 60.6
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.8e-09 65.9 76 52.6
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 1.8e-09 65.9 66 56.1
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 2.4e-09 65.5 67 56.7
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 2.4e-09 65.5 67 59.7
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 3.1e-09 65.1 66 57.6
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 3.1e-09 65.1 65 56.9
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 4.1e-09 64.7 64 60.9
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 5.3e-09 64.3 68 54.4
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 6.9e-09 63.9 64 59.4
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 6.9e-09 63.9 66 57.6
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 6.9e-09 63.9 65 55.4
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 6.9e-09 63.9 66 56.1
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 6.9e-09 63.9 66 56.1
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 6.9e-09 63.9 66 56.1
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 6.9e-09 63.9 66 56.1
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 9.1e-09 63.5 67 53.7
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 2.6e-08 62.0 64 60.9
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 3.4e-08 61.6 90 44.4
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.4e-08 61.6 54 64.8
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 3.4e-08 61.6 64 57.8
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 3.4e-08 61.6 67 53.7
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 4.5e-08 61.2 66 54.5
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 5.9e-08 60.8 64 57.8
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 3.8e-07 58.2 66 53.0
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 6.5e-07 57.4 93 44.1
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 6.5e-07 57.4 66 51.5
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.1e-06 56.6 64 56.2
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.5e-06 55.5 66 51.5
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 9.4e-06 53.5 66 50.0


User provided reference genes

Program Settings