Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 8.2e-157 557.0 278 100.0
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 5.4e-140 501.1 320 80.9
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.0e-138 496.9 320 80.3
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 6.6e-138 494.2 327 79.2
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.4e-134 481.9 366 71.6
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 5.2e-119 431.4 370 66.8
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 6.4e-109 397.9 329 65.7
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.6e-107 393.3 328 63.4
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 6.0e-107 391.3 327 63.0
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.9e-106 388.7 327 63.3
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.9e-105 386.3 324 62.0
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 2.5e-105 386.0 327 62.4
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 5.6e-105 384.8 324 61.4
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 9.6e-105 384.0 328 62.2
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.6e-105 384.0 327 62.7
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 9.6e-105 384.0 327 62.7
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.6e-104 383.3 327 62.1
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.1e-104 382.9 327 62.7
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.8e-103 379.8 327 61.5
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 3.1e-103 379.0 327 62.4
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 9.0e-103 377.5 328 60.7
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 1.5e-102 376.7 327 62.4
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.5e-102 376.7 327 61.5
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.8e-102 374.8 329 60.2
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.3e-101 373.6 327 60.9
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 2.9e-101 372.5 327 60.2
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 8.4e-101 370.9 321 61.1
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 8.4e-101 370.9 329 59.6
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.9e-100 369.8 329 59.3
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.2e-100 368.6 321 61.1
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 4.2e-100 368.6 327 60.6
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 4.2e-100 368.6 324 61.7
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 5.4e-100 368.2 327 60.9
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 4.6e-99 365.2 321 60.4
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 4.6e-99 365.2 327 59.6
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 6.0e-99 364.8 321 59.5
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 7.8e-99 364.4 321 60.7
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.3e-98 363.6 327 59.0
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.3e-98 363.6 328 58.2
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 2.3e-98 362.8 328 59.5
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 5.1e-98 361.7 321 58.9
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.6e-98 361.3 321 61.1
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 8.7e-98 360.9 328 60.4
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 3.3e-97 359.0 324 59.6
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 4.3e-97 358.6 323 59.4
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 9.6e-97 357.5 327 59.3
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.3e-96 357.1 310 60.6
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 2.1e-96 356.3 320 57.8
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 2.8e-96 355.9 327 59.9
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 2.8e-96 355.9 320 57.8
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 6.2e-96 354.8 335 58.2
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 8.1e-96 354.4 351 55.8
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 8.1e-96 354.4 320 57.5
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.1e-95 354.0 327 57.8
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.4e-95 353.6 327 57.8
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.8e-95 353.2 327 57.5
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.8e-95 353.2 327 57.5
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.8e-95 353.2 327 57.5
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 3.1e-95 352.4 324 58.6
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 4.0e-95 352.1 327 57.5
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 4.0e-95 352.1 327 57.5
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 4.0e-95 352.1 327 57.2
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 4.0e-95 352.1 327 58.7
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 4.0e-95 352.1 321 58.3
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 6.9e-95 351.3 327 58.7
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 1.2e-94 350.5 325 58.2
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.5e-94 350.1 321 58.6
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.4e-94 349.0 320 56.6
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 4.5e-94 348.6 327 57.8
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 9.9e-94 347.4 324 57.1
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.7e-93 346.7 327 57.5
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.7e-93 346.7 327 57.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 2.2e-93 346.3 327 57.2
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 3.8e-93 345.5 332 56.9
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 6.4e-93 344.7 339 58.1
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.1e-92 344.0 327 57.5
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.1e-92 344.0 320 57.2
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 2.4e-92 342.8 320 56.6
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 4.2e-92 342.0 327 58.1
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 5.4e-92 341.7 327 58.1
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 5.4e-92 341.7 327 58.1
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.2e-91 340.5 327 58.4
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.6e-91 340.1 324 58.3
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.1e-91 339.7 332 57.8
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 4.6e-91 338.6 340 56.2
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.0e-91 338.2 327 56.6
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.0e-91 338.2 327 56.6
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.0e-90 337.4 326 57.4
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 3.9e-90 335.5 299 61.9
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.5e-89 333.6 328 55.5
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 9.6e-89 330.9 328 54.9
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.8e-88 329.3 320 55.0
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 4.8e-88 328.6 320 54.7
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.4e-87 326.2 310 58.1
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 3.1e-87 325.9 279 60.9
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.3e-87 325.1 327 54.1
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 5.8e-86 321.6 320 53.8
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 4.9e-85 318.5 333 53.8
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.1e-84 317.4 335 51.9
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 5.5e-84 315.1 325 53.2
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 9.3e-84 314.3 323 54.5
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 7.9e-83 311.2 289 58.1
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 1.3e-82 310.5 325 51.7
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.9e-81 306.6 325 52.3
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 5.6e-81 305.1 322 52.5
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 9.6e-81 304.3 322 52.5
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.9e-76 290.0 341 48.4
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 5.5e-76 288.5 324 50.0
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 2.3e-74 283.1 370 46.5
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.6e-72 276.9 282 54.3
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.8e-71 273.5 288 50.7
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 4.2e-68 262.3 336 44.9
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 8.5e-61 238.0 156 79.5
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 9.4e-60 234.6 309 45.3
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 5.7e-57 225.3 193 61.7
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 7.4e-57 224.9 308 43.5
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.3e-56 224.2 281 45.2
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 3.7e-56 222.6 303 42.6
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.2e-43 181.0 273 45.4
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 6.1e-43 178.7 356 35.4
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 9.4e-36 154.8 271 35.8
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 3.0e-34 149.8 306 33.7
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.7e-32 144.1 277 33.6
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.0e-29 134.8 183 45.4
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 8.6e-29 131.7 282 33.3
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.1e-27 127.1 198 40.9
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 2.6e-25 120.2 92 71.7
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.8e-23 114.0 180 38.3
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.2e-22 111.3 102 56.9
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 7.3e-12 75.5 106 38.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 2.8e-11 73.6 49 71.4
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 3.4e-09 66.6 64 65.6
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 6.4e-08 62.4 57 57.9
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.7e-06 57.0 170 27.6


User provided reference genes

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