Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A423G40 Lonicera japonica HOM05D002865 ORTHO05D003289 3.6e-61 238.0 117 100.0
Lj3C422T5 Lonicera japonica HOM05D002865 ORTHO05D003289 1.2e-43 179.9 126 78.6
Lj3C423T18 Lonicera japonica HOM05D002865 ORTHO05D003289 1.3e-34 149.8 106 74.5
CiPaw.10G018000 Carya illinoinensis HOM05D002865 ORTHO05D003289 1.5e-27 126.3 103 65.0
Hma1.2p1_0079F.1_g041773 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 1.5e-27 126.3 164 46.3
Hma1.2p1_0079F.1_g041790 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 1.5e-27 126.3 164 46.3
Cc06_g06610 Coffea canephora HOM05D002865 ORTHO05D003289 3.4e-27 125.2 105 64.8
Gohir.A04G057700 Gossypium hirsutum HOM05D002865 ORTHO05D003289 2.9e-26 122.1 105 61.9
Gohir.D04G091500 Gossypium hirsutum HOM05D002865 ORTHO05D003289 2.9e-26 122.1 105 61.9
Gorai.009G396800 Gossypium raimondii HOM05D002865 ORTHO05D003289 2.9e-26 122.1 105 61.9
Lj3C423T20 Lonicera japonica HOM05D002865 ORTHO05D003289 2.9e-26 122.1 86 74.4
Manes.09G045700 Manihot esculenta HOM05D002865 ORTHO05D003289 4.9e-26 121.3 163 47.2
Thecc.05G105100 Theobroma cacao HOM05D002865 ORTHO05D003289 4.9e-26 121.3 103 63.1
Ciclev10011740m.g Citrus clementina HOM05D002865 ORTHO05D003289 1.9e-25 119.4 103 64.1
COL.COLO4_29569 Corchorus olitorius HOM05D002865 ORTHO05D003289 4.1e-25 118.2 103 61.2
Duzib093G2181 Durio zibethinus HOM05D002865 ORTHO05D003289 4.1e-25 118.2 103 60.2
QL07p036606 Quercus lobata HOM05D002865 ORTHO05D003289 7.0e-25 117.5 103 63.1
CSS0009458 Camellia sinensis var. sinensis HOM05D002865 ORTHO05D003289 9.2e-25 117.1 104 61.5
Dinv12341 Davidia involucrata HOM05D002865 ORTHO05D003289 9.2e-25 117.1 105 61.9
GSVIVG01011145001 Vitis vinifera HOM05D002865 ORTHO05D003289 1.2e-24 116.7 105 61.9
Haze_20175 Corylus avellana HOM05D002865 ORTHO05D003289 2.0e-24 115.9 103 60.2
Atru.chr8.1349 Acer truncatum HOM05D002865 ORTHO05D003289 3.5e-24 115.2 161 46.0
FvH4_6g20360 Fragaria vesca HOM05D002865 ORTHO05D003289 4.6e-24 114.8 102 63.7
FAN05G2473 Fragaria x ananassa HOM05D002865 ORTHO05D003289 4.6e-24 114.8 102 63.7
FAN05G2646 Fragaria x ananassa HOM05D002865 ORTHO05D003289 4.6e-24 114.8 102 63.7
FAN09G3527 Fragaria x ananassa HOM05D002865 ORTHO05D003289 4.6e-24 114.8 102 63.7
FAN14G2618 Fragaria x ananassa HOM05D002865 ORTHO05D003289 4.6e-24 114.8 102 63.7
Cpa.g.sc104.26 Carica papaya HOM05D002865 ORTHO05D003289 6.0e-24 114.4 103 61.2
Haze_20179 Corylus avellana HOM05D002865 ORTHO05D003289 1.0e-23 113.6 103 59.2
ECA233G4705 Erigeron canadensis HOM05D002865 ORTHO05D003289 1.0e-23 113.6 103 62.1
MD14G1048100 Malus domestica HOM05D002865 ORTHO05D003289 1.3e-23 113.2 161 44.7
Rhsim10G0140600 Rhododendron simsii HOM05D002865 ORTHO05D003289 1.3e-23 113.2 105 59.0
EL10Ac5g12973 Beta vulgaris HOM05D002865 ORTHO05D003289 2.3e-23 112.5 101 60.4
FAN02G0504 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.3e-23 112.5 102 62.7
Potri.006G202900 Populus trichocarpa HOM05D002865 ORTHO05D003289 2.3e-23 112.5 163 42.9
Actinidia37749 Actinidia chinensis HOM05D002865 ORTHO05D003289 3.0e-23 112.1 162 44.4
Lalb_Chr01g0017861 Lupinus albus HOM05D002865 ORTHO05D003289 3.9e-23 111.7 103 59.2
CANSAT64G2938 Cannabis sativa HOM05D002865 ORTHO05D003289 5.0e-23 111.3 103 59.2
MD12G1049200 Malus domestica HOM05D002865 ORTHO05D003289 5.0e-23 111.3 103 59.2
arahy.Tifrunner.gnm1.ann1.0FNG65 Arachis hypogaea HOM05D002865 ORTHO05D003289 8.6e-23 110.5 99 62.6
TAR369G0763 Trochodendron aralioides HOM05D002865 ORTHO05D003289 8.6e-23 110.5 105 60.0
PSO339G0847 Papaver somniferum HOM05D002865 ORTHO05D003289 1.5e-22 109.8 105 56.2
Prupe.7G094200 Prunus persica HOM05D002865 ORTHO05D003289 1.9e-22 109.4 102 59.8
HanXRQChr02g0053241 Helianthus annuus HOM05D002865 ORTHO05D003289 2.5e-22 109.0 105 58.1
vmacro12836 Vaccinium macrocarpon HOM05D002865 ORTHO05D003289 2.5e-22 109.0 105 57.1
VMungo1383G3695 Vigna mungo HOM05D002865 ORTHO05D003289 2.5e-22 109.0 102 58.8
AUR62030731 Chenopodium quinoa HOM05D002865 ORTHO05D003289 3.3e-22 108.6 99 59.6
Glyma.19G199400 Glycine max HOM05D002865 ORTHO05D003289 3.3e-22 108.6 103 56.3
Sed0026465 Sechium edule HOM05D002865 ORTHO05D003289 3.3e-22 108.6 103 59.2
THA.LOC104816643 Tarenaya hassleriana HOM05D002865 ORTHO05D003289 3.3e-22 108.6 99 57.6
Nitab4.5_0000077g0070 Nicotiana tabacum HOM05D002865 ORTHO05D003289 4.3e-22 108.2 105 57.1
Actinidia03886 Actinidia chinensis HOM05D002865 ORTHO05D003289 5.6e-22 107.8 163 43.6
Actinidia03995 Actinidia chinensis HOM05D002865 ORTHO05D003289 5.6e-22 107.8 163 43.6
Nitab4.5_0000384g0010 Nicotiana tabacum HOM05D002865 ORTHO05D003289 7.3e-22 107.5 103 57.3
Glyma.03G202400 Glycine max HOM05D002865 ORTHO05D003289 9.5e-22 107.1 103 57.3
Hund14962 Selenicereus undatus HOM05D002865 ORTHO05D003289 9.5e-22 107.1 104 53.8
CAN.G574.4 Capsicum annuum HOM05D002865 ORTHO05D003289 1.2e-21 106.7 105 59.0
AUR62036371 Chenopodium quinoa HOM05D002865 ORTHO05D003289 1.2e-21 106.7 101 59.4
MELO3C008785.2 Cucumis melo HOM05D002865 ORTHO05D003289 1.2e-21 106.7 103 59.2
MBI12_g10424_MAGBIO Magnolia biondii HOM05D002865 ORTHO05D003289 1.2e-21 106.7 105 55.2
RcHm_v2.0_Chr3g0475971 Rosa chinensis HOM05D002865 ORTHO05D003289 1.2e-21 106.7 102 60.8
Sabra06G0156000 Salix brachista HOM05D002865 ORTHO05D003289 1.2e-21 106.7 105 55.2
PSO384G1255 Papaver somniferum HOM05D002865 ORTHO05D003289 1.6e-21 106.3 105 56.2
Aqoxy1G00651 Aquilegia oxysepala HOM05D002865 ORTHO05D003289 2.8e-21 105.5 101 59.4
CsaV3_4G013470 Cucumis sativus L. HOM05D002865 ORTHO05D003289 2.8e-21 105.5 103 59.2
Lj1g0018446 Lotus japonicus HOM05D002865 ORTHO05D003289 4.7e-21 104.8 102 57.8
MSTRG.26606 Avicennia marina HOM05D002865 ORTHO05D003289 6.2e-21 104.4 105 58.1
Eucgr.A02587 Eucalyptus grandis HOM05D002865 ORTHO05D003289 6.2e-21 104.4 103 58.3
Lj3A423T50 Lonicera japonica HOM05D002865 ORTHO05D003289 6.2e-21 104.4 102 57.8
PGSC0003DMG400021355 Solanum tuberosum HOM05D002865 ORTHO05D003289 6.2e-21 104.4 105 58.1
Lsat_1_v5_gn_6_33500 Lactuca sativa HOM05D002865 ORTHO05D003289 1.1e-20 103.6 103 55.3
Solyc01g007060.3 Solanum lycopersicum HOM05D002865 ORTHO05D003289 1.4e-20 103.2 105 57.1
Peaxi162Scf00910g00220 Petunia axillaris HOM05D002865 ORTHO05D003289 1.8e-20 102.8 105 58.1
Sopen01g003040 Solanum pennellii HOM05D002865 ORTHO05D003289 2.3e-20 102.4 105 57.1
TWI74G0042 Tripterygium wilfordii HOM05D002865 ORTHO05D003289 2.3e-20 102.4 103 56.3
Thhalv10020747m.g Eutrema salsugineum HOM05D002865 ORTHO05D003289 4.0e-20 101.7 101 54.5
Migut.L01829 Erythranthe guttata HOM05D002865 ORTHO05D003289 6.8e-20 100.9 103 55.3
Medtr7g106330 Medicago truncatula HOM05D002865 ORTHO05D003289 1.5e-19 99.8 103 54.4
Psat3g028440 Pisum sativum HOM05D002865 ORTHO05D003289 1.5e-19 99.8 103 53.4
Ca_09060_v3 Cicer arietinum L. HOM05D002865 ORTHO05D003289 2.0e-19 99.4 103 54.4
Sc01g0005360 Simmondsia chinensis HOM05D002865 ORTHO05D003289 2.0e-19 99.4 101 53.5
Sp3g04550 Schrenkiella parvula HOM05D002865 ORTHO05D003289 2.6e-19 99.0 99 54.5
Aa31LG5G16090 Aethionema arabicum HOM05D002865 ORTHO05D003289 3.4e-19 98.6 99 53.5
ClCG04G005150 Citrullus lanatus HOM05D002865 ORTHO05D003289 4.4e-19 98.2 103 55.3
HPP92_000996 Vanilla planifolia HOM05D002865 ORTHO05D003289 4.4e-19 98.2 103 56.3
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 5.8e-19 97.8 99 53.5
Nn6g34682 Nelumbo nucifera HOM05D002865 ORTHO05D003289 5.8e-19 97.8 104 55.8
AT3G05675 Arabidopsis thaliana HOM05D002865 ORTHO05D003289 1.7e-18 96.3 99 53.5
BcaB04g19249 Brassica carinata HOM05D000005 ORTHO05D000449 2.9e-18 95.5 101 50.5
Carub.0003s0501 Capsella rubella HOM05D002865 ORTHO05D003289 4.9e-18 94.7 99 53.5
SEGI_32450 Sequoiadendron giganteum HOM05D002865 ORTHO05D003289 4.9e-18 94.7 107 53.3
Cfa020035 Carpinus fangiana HOM05D002865 ORTHO05D003289 6.4e-18 94.4 71 69.0
CARHR080120 Cardamine hirsuta HOM05D002865 ORTHO05D003289 8.3e-18 94.0 100 52.0
Lj3C423T6 Lonicera japonica HOM05D002865 ORTHO05D003289 8.3e-18 94.0 69 73.9
AL3G16330 Arabidopsis lyrata HOM05D002865 ORTHO05D003289 5.4e-17 91.3 99 52.5
unitig_8.g4977 Utricularia gibba HOM05D002865 ORTHO05D003289 4.6e-16 88.2 103 50.5
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 7.8e-16 87.4 103 50.5
Oeu042076.1 Olea europaea HOM05D002865 ORTHO05D003289 1.0e-15 87.0 68 66.2
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 1.7e-15 86.3 103 49.5
BolC3t16448H Brassica oleracea HOM05D002865 ORTHO05D003289 1.7e-15 86.3 103 49.5
Pp3c24_16440 Physcomitrium patens HOM05D002865 ORTHO05D003289 3.9e-15 85.1 114 45.6
Pp3c20_1690 Physcomitrium patens HOM05D002865 ORTHO05D003289 5.1e-15 84.7 110 44.5
Mapoly0850s0001 Marchantia polymorpha HOM05D002865 ORTHO05D003289 1.5e-14 83.2 103 44.7
Zm00001eb320450 Zea mays HOM05D002865 ORTHO05D003289 1.5e-14 83.2 99 51.5
TAR374G1250 Trochodendron aralioides HOM05D002865 ORTHO05D003289 2.5e-14 82.4 104 43.3
Pp3c8_21540 Physcomitrium patens HOM05D002865 ORTHO05D003289 3.3e-14 82.0 109 44.0
Aqoxy7G00042 Aquilegia oxysepala HOM05D002865 ORTHO05D003289 7.3e-14 80.9 103 43.7
Rhsim02G0250100 Rhododendron simsii HOM05D002865 ORTHO05D003289 7.3e-14 80.9 107 41.1
Pp3c23_20080 Physcomitrium patens HOM05D002865 ORTHO05D003289 1.2e-13 80.1 114 43.0
Phvul.001G195900 Phaseolus vulgaris HOM05D002865 ORTHO05D003289 2.8e-13 79.0 125 45.6
SGA_v2.0_scaffold35G14017 Striga asiatica HOM05D002865 ORTHO05D003289 6.2e-13 77.8 105 44.8
CSS0036805 Camellia sinensis var. sinensis HOM05D002865 ORTHO05D003289 8.1e-13 77.4 108 41.7
ATR0772G218 Amborella trichopoda HOM05D002865 ORTHO05D003289 1.8e-12 76.3 83 49.4
GSVIVG01019622001 Vitis vinifera HOM05D002865 ORTHO05D003289 1.8e-12 76.3 105 40.0
Oeu013551.1 Olea europaea HOM05D002865 ORTHO05D003289 2.3e-12 75.9 109 43.1
Os07g0668800 Oryza sativa ssp. japonica HOM05D002865 ORTHO05D003289 2.3e-12 75.9 99 45.5
Dinv03435 Davidia involucrata HOM05D002865 ORTHO05D003289 4.0e-12 75.1 109 38.5
HanXRQChr17g0534361 Helianthus annuus HOM05D002865 ORTHO05D003289 5.2e-12 74.7 99 41.4
CDE02G3339 Ceratophyllum demersum HOM05D002865 ORTHO05D003289 1.2e-11 73.6 102 40.2
Cc08_g16580 Coffea canephora HOM05D002865 ORTHO05D003289 1.2e-11 73.6 107 37.4
MBI04_g36400_MAGBIO Magnolia biondii HOM05D002865 ORTHO05D003289 1.2e-11 73.6 100 40.0
Hma1.2p1_0456F.1_g156480 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 2.0e-11 72.8 105 38.1
Actinidia22193 Actinidia chinensis HOM05D002865 ORTHO05D003289 2.6e-11 72.4 104 40.4
CiPaw.12G079100 Carya illinoinensis HOM05D002865 ORTHO05D003289 4.4e-11 71.6 105 41.9
HPP92_022373 Vanilla planifolia HOM05D002865 ORTHO05D003289 4.4e-11 71.6 101 39.6
Haze_09131 Corylus avellana HOM05D002865 ORTHO05D003289 5.8e-11 71.2 99 42.4
ECA246G1766 Erigeron canadensis HOM05D002865 ORTHO05D003289 5.8e-11 71.2 99 40.4
FvH4_5g11380 Fragaria vesca HOM05D002865 ORTHO05D003289 7.5e-11 70.9 103 40.8
FAN18G0892 Fragaria x ananassa HOM05D002865 ORTHO05D003289 7.5e-11 70.9 103 40.8
PSO063G4504 Papaver somniferum HOM05D002865 ORTHO05D003289 9.9e-11 70.5 109 36.7
Atru.chr9.1914 Acer truncatum HOM05D002865 ORTHO05D003289 1.3e-10 70.1 102 41.2
AUR62007031 Chenopodium quinoa HOM05D002865 ORTHO05D003289 1.3e-10 70.1 101 39.6
Ah.07g197790 Amaranthus hybridus HOM05D002865 ORTHO05D003289 1.7e-10 69.7 103 37.9
DCAR_006495 Daucus carota HOM05D002865 ORTHO05D003289 1.7e-10 69.7 101 39.6
MD06G1114200 Malus domestica HOM05D002865 ORTHO05D003289 1.7e-10 69.7 111 39.6
RcHm_v2.0_Chr7g0186491 Rosa chinensis HOM05D002865 ORTHO05D003289 1.7e-10 69.7 103 39.8
Sabra03G0105300 Salix brachista HOM05D002865 ORTHO05D003289 1.7e-10 69.7 131 34.4
Prupe.5G127000 Prunus persica HOM05D002865 ORTHO05D003289 2.2e-10 69.3 98 40.8
AUR62019895 Chenopodium quinoa HOM05D002865 ORTHO05D003289 2.9e-10 68.9 101 39.6
FvH4_4g07840 Fragaria vesca HOM05D002865 ORTHO05D003289 2.9e-10 68.9 103 38.8
FAN12G2865 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.9e-10 68.9 103 38.8
FAN07G0927 Fragaria x ananassa HOM05D002865 ORTHO05D003289 3.7e-10 68.6 103 37.9
Manes.10G065100 Manihot esculenta HOM05D002865 ORTHO05D003289 3.7e-10 68.6 101 38.6
Eucgr.D01699 Eucalyptus grandis HOM05D002865 ORTHO05D003289 4.9e-10 68.2 107 38.3
PSO782G0568 Papaver somniferum HOM05D002865 ORTHO05D003289 4.9e-10 68.2 109 35.8
Sc01g0010530 Simmondsia chinensis HOM05D002865 ORTHO05D003289 4.9e-10 68.2 102 38.2
FAN17G1400 Fragaria x ananassa HOM05D002865 ORTHO05D003289 6.4e-10 67.8 103 37.9
Gohir.A12G238800 Gossypium hirsutum HOM05D002865 ORTHO05D003289 8.3e-10 67.4 105 36.2
Ciclev10020226m.g Citrus clementina HOM05D002865 ORTHO05D003289 1.1e-09 67.0 105 39.0
MD14G1135500 Malus domestica HOM05D002865 ORTHO05D003289 1.1e-09 67.0 111 37.8
QL02p028873 Quercus lobata HOM05D002865 ORTHO05D003289 1.4e-09 66.6 103 37.9
Duzib205G0689 Durio zibethinus HOM05D002865 ORTHO05D003289 1.9e-09 66.2 101 37.6
Gorai.008G257000 Gossypium raimondii HOM05D002865 ORTHO05D003289 1.9e-09 66.2 105 38.1
HanXRQChr17g0534481 Helianthus annuus HOM05D002865 ORTHO05D003289 1.9e-09 66.2 88 44.3
FAN08G2803 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.4e-09 65.9 103 39.8
Thecc.03G224100 Theobroma cacao HOM05D002865 ORTHO05D003289 3.2e-09 65.5 101 37.6
COL.COLO4_10768 Corchorus olitorius HOM05D002865 ORTHO05D003289 4.1e-09 65.1 101 37.6
FAN22G2270 Fragaria x ananassa HOM05D002865 ORTHO05D003289 4.1e-09 65.1 103 36.9
Gohir.D12G239900 Gossypium hirsutum HOM05D002865 ORTHO05D003289 4.1e-09 65.1 105 37.1
ATR0757G155 Amborella trichopoda HOM05D002865 ORTHO05D003289 7.1e-09 64.3 101 42.6
Potri.001G086100 Populus trichocarpa HOM05D002865 ORTHO05D003289 9.2e-09 63.9 101 35.6
EL10Ac5g12463 Beta vulgaris HOM05D002865 ORTHO05D003289 1.2e-08 63.5 102 36.3
Duzib084G0225 Durio zibethinus HOM05D002865 ORTHO05D003289 1.2e-08 63.5 101 37.6
CANSAT21G1641 Cannabis sativa HOM05D002865 ORTHO05D003289 2.1e-08 62.8 101 34.7
Sabra01G0062400 Salix brachista HOM05D002865 ORTHO05D003289 2.7e-08 62.4 100 36.0
BcaB04g19245 Brassica carinata HOM05D002865 ORTHO05D003289 7.8e-08 60.8 52 51.9
SMO304G0015 Selaginella moellendorffii HOM05D002865 ORTHO05D003289 7.8e-08 60.8 113 33.6
Zm00001eb378460 Zea mays HOM05D002865 ORTHO05D003289 1.3e-07 60.1 100 36.0
CDE04G0085 Ceratophyllum demersum HOM05D002865 ORTHO05D003289 8.6e-07 57.4 102 34.3


User provided reference genes

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