Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.8e-96 355.9 184 100.0
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.5e-50 203.4 219 61.2
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 8.7e-46 187.6 213 59.2
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.5e-45 186.8 222 55.9
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.5e-45 186.8 222 55.9
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 7.4e-45 184.5 230 53.9
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.3e-44 183.7 232 52.2
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.8e-43 179.9 222 51.4
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 5.3e-43 178.3 221 53.4
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.0e-42 176.4 230 51.7
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.4e-42 175.6 223 51.1
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.4e-42 175.6 223 51.1
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 3.4e-42 175.6 227 51.1
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 1.0e-41 174.1 216 53.7
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 2.9e-41 172.6 235 50.2
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 6.5e-41 171.4 221 51.1
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.9e-40 169.9 240 50.0
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.9e-40 169.9 220 50.5
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 2.5e-40 169.5 216 52.8
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.2e-40 169.1 214 49.5
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 9.3e-40 167.5 222 54.5
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 9.3e-40 167.5 240 49.6
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.2e-39 167.2 231 50.6
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.2e-39 167.2 230 49.1
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.2e-39 167.2 227 50.2
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 1.6e-39 166.8 231 48.5
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 2.1e-39 166.4 204 54.4
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 2.7e-39 166.0 236 48.3
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 3.5e-39 165.6 220 50.0
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 6.0e-39 164.9 233 47.2
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 6.0e-39 164.9 233 47.2
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 6.0e-39 164.9 211 51.7
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.9e-39 164.5 229 48.0
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.8e-38 163.3 226 51.3
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 2.3e-38 162.9 236 46.6
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 3.9e-38 162.2 197 51.8
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.5e-37 159.5 247 46.6
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 3.3e-37 159.1 228 48.2
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.3e-37 158.7 248 46.8
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 9.6e-37 157.5 228 43.4
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 9.6e-37 157.5 228 43.4
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 1.6e-36 156.8 228 51.3
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.6e-36 156.8 216 48.1
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.6e-36 156.8 216 48.1
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 1.6e-36 156.8 227 46.7
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.8e-36 156.0 228 43.9
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 2.8e-36 156.0 248 47.2
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 3.7e-36 155.6 247 46.2
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 3.7e-36 155.6 229 47.6
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.8e-36 155.2 225 48.4
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.2e-36 154.8 200 55.0
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 6.2e-36 154.8 244 45.9
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 8.2e-36 154.5 228 42.1
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.1e-35 154.1 228 42.5
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 2.4e-35 152.9 247 45.3
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.4e-35 152.9 208 50.0
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 3.1e-35 152.5 216 48.6
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.1e-35 152.5 225 48.0
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 4.1e-35 152.1 236 46.6
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 5.3e-35 151.8 229 48.0
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 9.0e-35 151.0 224 46.4
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.2e-34 150.6 196 51.0
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 3.4e-34 149.1 221 49.3
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 3.4e-34 149.1 219 47.5
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 4.5e-34 148.7 221 43.0
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 7.6e-34 147.9 228 46.5
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 7.6e-34 147.9 232 45.7
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.3e-33 147.1 221 43.0
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.3e-33 147.1 225 46.2
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.7e-33 146.7 199 50.8
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 2.9e-33 146.0 190 53.2
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.9e-33 146.0 230 50.0
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.5e-32 142.9 249 44.2
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.6e-31 140.2 228 45.2
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 3.5e-31 139.0 262 41.6
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 6.1e-31 138.3 226 43.4
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 7.9e-31 137.9 231 42.9
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.0e-30 137.5 213 47.4
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 3.9e-30 135.6 194 42.3
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 5.1e-30 135.2 218 46.3
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 8.7e-30 134.4 222 43.7
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.5e-29 132.9 227 43.6
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.6e-28 130.2 211 43.6
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.7e-28 129.0 222 42.3
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.7e-28 129.0 146 55.5
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 4.8e-28 128.6 224 38.4
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 4.8e-28 128.6 224 38.4
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 6.3e-28 128.3 213 40.4
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 8.2e-28 127.9 210 42.4
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 3.1e-27 125.9 213 41.3
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 3.1e-27 125.9 200 45.0
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 5.3e-27 125.2 197 45.2
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 9.0e-27 124.4 150 57.3
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.0e-25 120.9 212 37.3
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 1.3e-25 120.6 169 47.3
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.3e-25 120.6 201 42.3
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.2e-25 119.8 212 37.7
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 2.9e-25 119.4 211 38.4
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 3.8e-25 119.0 196 45.4
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 3.8e-25 119.0 196 45.4
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 6.5e-25 118.2 241 39.4
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 6.5e-25 118.2 206 40.3
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.5e-24 116.3 227 44.5
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 4.2e-24 115.5 203 37.4
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 5.5e-24 115.2 242 42.1
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 9.4e-24 114.4 124 59.7
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.2e-23 114.0 197 45.2
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 1.6e-23 113.6 230 38.7
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 7.9e-23 111.3 200 37.0
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.8e-22 110.2 190 42.6
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.0e-22 109.4 206 43.2
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 3.9e-22 109.0 197 40.1
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 3.9e-22 109.0 197 40.1
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 3.9e-22 109.0 197 40.1
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 3.9e-22 109.0 191 37.2
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 5.1e-22 108.6 197 37.6
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 5.1e-22 108.6 197 37.6
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 6.7e-22 108.2 197 37.6
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.5e-21 107.1 193 39.9
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.5e-21 106.3 200 37.0
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.4e-21 104.8 132 47.0
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 9.7e-21 104.4 186 40.9
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 9.7e-21 104.4 186 40.9
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.8e-20 102.8 187 36.9
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.7e-20 102.4 138 41.3
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.8e-19 100.1 201 40.3
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.4e-19 99.8 193 36.8
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.4e-19 99.8 176 39.2
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 4.1e-19 99.0 202 40.1
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 4.1e-19 99.0 221 31.7
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 2.0e-18 96.7 190 37.9
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.6e-18 96.3 191 37.7
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 5.9e-18 95.1 189 37.6
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.7e-17 93.6 188 35.6
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 1.1e-16 90.9 104 50.0
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.9e-16 90.1 192 34.4
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 7.2e-16 88.2 175 33.7
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 9.4e-16 87.8 238 31.5
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 9.4e-16 87.8 105 47.6
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.2e-15 87.4 181 36.5
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 2.7e-15 86.3 104 48.1
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 3.6e-15 85.9 131 37.4
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 6.1e-15 85.1 103 46.6
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 3.9e-14 82.4 188 35.1
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.5e-13 80.5 119 49.6
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 1.5e-13 80.5 135 40.0
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 8.2e-12 74.7 147 38.8
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.7e-09 67.0 139 38.1
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 5.0e-09 65.5 231 32.5
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 5.0e-09 65.5 84 54.8
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 6.5e-09 65.1 103 47.6
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.7e-07 59.7 178 37.6
CDE02G3549 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.0e-06 57.8 126 28.6


User provided reference genes

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