Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.2e-145 518.8 246 100.0
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.9e-145 518.5 245 100.0
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 7.7e-98 360.9 245 70.2
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 2.2e-97 359.4 245 69.0
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 2.7e-95 352.4 245 67.8
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 3.0e-94 349.0 245 67.8
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.6e-93 345.9 245 65.7
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 9.7e-93 344.0 245 65.7
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 9.1e-91 337.4 245 64.1
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.2e-90 337.0 243 65.4
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.6e-90 336.7 245 64.5
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 3.5e-90 335.5 245 66.5
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 3.5e-90 335.5 245 64.5
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 4.5e-90 335.1 245 63.7
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 7.7e-90 334.3 245 65.7
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 7.7e-90 334.3 245 65.7
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.9e-88 329.7 245 60.8
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 7.2e-88 327.8 245 62.4
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.2e-87 327.0 249 62.7
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.6e-87 326.6 245 63.3
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 1.0e-86 323.9 245 61.2
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 2.3e-86 322.8 245 64.9
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 3.0e-86 322.4 245 60.4
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 6.7e-86 321.2 245 61.2
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 6.7e-86 321.2 242 64.0
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 8.8e-86 320.9 245 60.0
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 8.8e-86 320.9 245 61.6
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.5e-85 320.1 245 60.8
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 2.0e-85 319.7 245 61.2
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 2.6e-85 319.3 245 62.0
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 3.3e-85 318.9 245 60.8
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 7.5e-85 317.8 244 58.6
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 7.5e-85 317.8 256 59.0
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.7e-84 316.6 245 60.4
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 8.2e-84 314.3 242 62.8
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.1e-83 313.9 245 60.4
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.4e-83 313.5 245 62.4
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 3.1e-83 312.4 245 60.0
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 4.1e-83 312.0 246 59.3
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 5.3e-83 311.6 227 64.8
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 5.3e-83 311.6 245 62.0
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 9.1e-83 310.8 247 59.5
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.6e-82 310.1 244 59.4
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 7.7e-82 307.8 247 59.9
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 7.7e-82 307.8 247 58.7
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.0e-81 307.4 246 58.1
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.3e-81 307.0 244 59.4
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.7e-81 306.6 244 60.2
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.2e-81 306.2 244 60.7
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 3.8e-81 305.4 245 58.4
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.1e-80 303.9 244 59.4
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.1e-80 303.9 244 59.0
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.5e-80 303.5 245 60.4
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 2.5e-80 302.8 245 58.4
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 5.5e-80 301.6 247 57.5
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 5.5e-80 301.6 242 60.3
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.2e-79 300.4 243 58.8
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 1.6e-79 300.1 244 58.2
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.6e-79 300.1 244 56.6
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 2.1e-79 299.7 245 57.6
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.1e-79 299.7 243 58.4
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 4.7e-79 298.5 244 59.4
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.0e-78 297.4 244 56.1
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 1.8e-78 296.6 243 58.4
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 5.2e-78 295.0 244 58.2
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 8.8e-78 294.3 246 58.5
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 1.2e-77 293.9 245 56.7
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.2e-77 293.9 246 57.3
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 4.4e-77 292.0 245 57.6
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 7.5e-77 291.2 245 56.7
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 1.3e-76 290.4 244 57.0
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 2.2e-76 289.7 246 56.5
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 2.2e-76 289.7 246 55.7
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 2.8e-76 289.3 246 56.1
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.8e-76 289.3 246 56.1
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 3.7e-76 288.9 244 55.3
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 3.7e-76 288.9 244 59.8
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.8e-75 286.6 246 56.1
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.8e-75 286.6 245 57.1
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.4e-75 286.2 244 54.9
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 3.1e-75 285.8 244 55.3
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 7.0e-75 284.6 243 56.4
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 7.0e-75 284.6 243 56.4
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 1.2e-74 283.9 244 54.9
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.6e-74 283.5 243 58.4
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 7.7e-74 281.2 242 56.2
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 1.0e-73 280.8 244 55.7
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 1.0e-73 280.8 244 55.7
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.7e-73 280.0 246 56.9
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.7e-73 280.0 246 56.9
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 3.8e-73 278.9 245 54.7
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 6.5e-73 278.1 244 56.6
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 2.5e-72 276.2 243 53.5
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 5.7e-69 265.0 245 54.3
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 5.7e-69 265.0 245 54.3
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 5.7e-69 265.0 245 54.3
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 2.2e-68 263.1 244 51.2
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 4.1e-67 258.8 241 54.8
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.2e-66 257.3 229 54.1
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 6.6e-65 251.5 247 52.2
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 1.1e-64 250.8 244 48.4
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.6e-63 246.9 238 54.6
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 2.1e-63 246.5 243 51.9
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 4.7e-63 245.4 244 53.7
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 8.9e-62 241.1 244 49.2
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.5e-61 240.4 244 49.2
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 2.9e-60 236.1 166 68.1
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 3.7e-60 235.7 245 50.2
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 1.1e-59 234.2 247 48.6
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.4e-59 233.8 166 63.3
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.7e-58 229.6 158 67.7
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 2.3e-54 216.5 247 47.0
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 7.0e-51 204.9 171 57.3
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.2e-50 204.1 175 57.7
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.6e-50 203.8 146 61.6
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.7e-50 203.0 166 60.2
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.0e-49 201.1 162 59.9
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 1.2e-47 194.1 245 44.5
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 6.2e-47 191.8 243 41.2
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.5e-45 187.2 245 41.6
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 3.4e-45 186.0 242 43.0
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.5e-42 176.0 152 53.3
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 5.6e-40 168.7 236 39.0
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 1.2e-39 167.5 247 41.3
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 2.2e-36 156.8 235 36.2
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 4.9e-36 155.6 123 57.7
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 8.4e-28 128.3 245 34.3
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 2.7e-26 123.2 239 31.8
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 7.8e-26 121.7 247 36.8
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 4.0e-22 109.4 257 28.0
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 3.2e-11 73.2 205 28.3
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 3.1e-06 56.6 32 71.9


User provided reference genes

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