Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 2.7e-91 338.6 162 100.0
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.4e-84 315.5 153 99.3
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 7.1e-60 234.2 144 76.4
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 1.2e-59 233.4 144 78.5
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 5.1e-58 228.0 143 75.5
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 1.9e-57 226.1 144 76.4
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 2.5e-57 225.7 146 71.2
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 4.3e-57 224.9 142 75.4
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.3e-56 223.4 146 71.9
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.3e-56 223.4 146 69.2
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.3e-56 223.4 146 69.2
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.3e-56 223.4 146 69.2
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 1.6e-56 223.0 146 73.3
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 2.8e-56 222.2 146 69.2
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 4.8e-56 221.5 144 70.8
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 4.8e-56 221.5 145 72.4
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.8e-55 219.5 144 71.5
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 2.4e-55 219.2 144 70.8
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.3e-55 218.0 144 70.1
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 5.3e-55 218.0 142 72.5
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 6.9e-55 217.6 144 70.1
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 6.9e-55 217.6 146 71.2
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 6.9e-55 217.6 140 73.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 9.0e-55 217.2 144 70.1
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 9.0e-55 217.2 144 70.1
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.2e-54 216.9 143 69.9
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.5e-54 216.5 144 70.1
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.5e-54 216.5 144 70.8
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.0e-54 216.1 144 72.9
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 3.4e-54 215.3 142 69.7
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 3.4e-54 215.3 146 69.2
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 7.6e-54 214.2 142 72.5
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.0e-53 213.8 144 70.8
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.3e-53 213.4 146 70.5
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.7e-53 213.0 144 68.1
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.7e-53 213.0 143 69.9
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 2.9e-53 212.2 144 69.4
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.8e-53 211.8 142 70.4
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 5.0e-53 211.5 146 69.2
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 5.0e-53 211.5 146 69.9
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 5.0e-53 211.5 142 70.4
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 6.5e-53 211.1 144 68.1
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 6.5e-53 211.1 142 72.5
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 6.5e-53 211.1 144 70.1
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 2.5e-52 209.1 144 66.7
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 2.5e-52 209.1 142 71.1
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 3.2e-52 208.8 143 69.9
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 3.2e-52 208.8 144 68.1
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 4.2e-52 208.4 145 67.6
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 4.2e-52 208.4 144 66.7
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 4.2e-52 208.4 143 68.5
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 5.5e-52 208.0 142 71.1
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 7.2e-52 207.6 142 69.0
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 9.3e-52 207.2 146 66.4
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 9.3e-52 207.2 144 66.7
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 9.3e-52 207.2 142 70.4
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.2e-51 206.8 144 68.1
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.1e-51 206.1 144 69.4
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.1e-51 206.1 143 72.0
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 4.6e-51 204.9 142 69.0
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.3e-50 203.4 144 66.7
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.3e-50 203.4 143 67.8
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.3e-50 203.4 142 67.6
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.8e-50 203.0 144 64.6
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 2.3e-50 202.6 145 65.5
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 3.9e-50 201.8 142 69.0
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 3.9e-50 201.8 143 67.1
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 8.7e-50 200.7 143 66.4
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 8.7e-50 200.7 143 67.1
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 9.7e-49 197.2 143 61.5
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 9.7e-49 197.2 144 66.7
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.3e-48 196.8 143 60.8
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.3e-48 196.8 143 60.8
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.3e-48 196.8 144 66.0
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 1.3e-48 196.8 143 60.1
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.6e-48 196.4 177 55.9
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 2.2e-48 196.1 143 60.8
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 2.2e-48 196.1 143 60.8
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 3.7e-48 195.3 151 60.9
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 8.2e-48 194.1 145 66.2
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 8.2e-48 194.1 143 59.4
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 3.1e-47 192.2 142 62.7
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 4.1e-47 191.8 144 61.8
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 5.3e-47 191.4 142 62.7
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 6.9e-47 191.0 143 58.0
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 6.9e-47 191.0 143 62.9
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 6.9e-47 191.0 143 58.7
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 1.5e-46 189.9 143 62.9
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 1.5e-46 189.9 143 59.4
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.0e-46 189.5 142 62.0
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.6e-46 189.1 142 63.4
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.0e-45 187.2 144 59.7
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.3e-45 186.8 158 55.1
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 2.9e-45 185.7 145 65.5
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.9e-44 183.0 142 62.0
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 8.8e-42 174.1 141 59.6
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 2.5e-41 172.6 144 55.6
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.3e-40 170.2 112 70.5
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.8e-40 169.1 144 56.2
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.1e-39 167.2 144 55.6
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 3.1e-39 165.6 127 65.4
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 3.1e-39 165.6 127 65.4
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 9.1e-39 164.1 127 62.2
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 2.0e-38 162.9 108 68.5
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.7e-38 161.0 143 56.6
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 6.5e-37 157.9 129 60.5
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 1.4e-36 156.8 108 68.5
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 7.2e-36 154.5 108 64.8
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.6e-35 153.3 107 66.4
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.6e-35 152.1 108 69.4
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 3.6e-35 152.1 145 53.1
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 7.9e-35 151.0 161 49.7
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 5.1e-34 148.3 169 46.7
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.1e-31 140.6 143 50.3
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 1.1e-31 140.6 143 50.3
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 9.1e-31 137.5 143 49.0
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 9.1e-31 137.5 143 49.0
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 9.1e-31 137.5 143 49.0
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.0e-29 134.0 140 52.1
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 5.0e-29 131.7 141 45.4
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.0e-26 124.0 100 61.0
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 4.0e-26 122.1 134 44.8
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.5e-25 120.2 143 44.8
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 4.8e-24 115.2 146 42.5
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 4.8e-24 115.2 113 49.6
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 8.2e-24 114.4 81 60.5
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 9.1e-23 110.9 72 66.7
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 3.2e-20 102.4 134 44.0
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 2.2e-16 89.7 139 40.3
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 4.8e-16 88.6 147 38.1
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 1.8e-15 86.7 77 50.6
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.2e-13 79.7 127 39.4
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 2.8e-08 62.8 37 73.0
CSS0005517 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.1e-07 59.3 66 47.0


User provided reference genes

Program Settings