Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A30T36 Lonicera japonica HOM05D000455 ORTHO05D010913 1.5e-143 512.7 239 100.0
Lj3A52T15 Lonicera japonica HOM05D000455 ORTHO05D010913 5.0e-118 427.9 234 86.8
Lj3A31T23 Lonicera japonica HOM05D000455 ORTHO05D010913 3.2e-117 425.2 230 88.3
Lj3A57G24 Lonicera japonica HOM05D000455 ORTHO05D010913 3.2e-109 398.7 220 85.5
Lj3A56G20 Lonicera japonica HOM05D000455 ORTHO05D010913 3.2e-101 372.1 179 97.2
Lj3A60G10 Lonicera japonica HOM05D000455 ORTHO05D010913 3.4e-90 335.5 175 90.9
Lj3A31T20 Lonicera japonica HOM05D000455 ORTHO05D010913 1.2e-71 273.9 248 58.5
Lj3A57T25 Lonicera japonica HOM05D000455 ORTHO05D010913 5.6e-69 265.0 230 61.7
Lj3P63T18 Lonicera japonica HOM05D000455 ORTHO05D010913 4.4e-66 255.4 249 55.8
Lj3C41G0 Lonicera japonica HOM05D000455 ORTHO05D010913 1.3e-62 243.8 218 57.3
Lj3C66T0 Lonicera japonica HOM05D000455 ORTHO05D010913 1.6e-60 236.9 227 56.8
Lj3A30G30 Lonicera japonica HOM05D000455 ORTHO05D010913 1.5e-58 230.3 206 59.7
Lj3C59T0 Lonicera japonica HOM05D000455 ORTHO05D010913 3.2e-56 222.6 240 53.3
Lj3A52G17 Lonicera japonica HOM05D000455 ORTHO05D010913 3.0e-54 216.1 215 54.4
Lj3A53T23 Lonicera japonica HOM05D000455 ORTHO05D010913 4.7e-52 208.8 233 49.8
Lj3C58T3 Lonicera japonica HOM05D000455 ORTHO05D010913 1.8e-51 206.8 217 55.3
Lj3C20G5 Lonicera japonica HOM05D000455 ORTHO05D000462 3.4e-50 202.6 198 52.5
Lj3C62T11 Lonicera japonica HOM05D000455 ORTHO05D010913 4.4e-50 202.2 237 50.6
Lj3A55G12 Lonicera japonica HOM05D000455 ORTHO05D010913 2.9e-49 199.5 239 48.1
Lj3C60G0 Lonicera japonica HOM05D000455 ORTHO05D010913 8.4e-49 198.0 210 52.9
Lj3A31T21 Lonicera japonica HOM05D000455 ORTHO05D010913 1.6e-47 193.7 242 47.1
Lj3A58T12 Lonicera japonica HOM05D000455 ORTHO05D010913 5.8e-42 175.3 180 55.0
Lj3A54G25 Lonicera japonica HOM05D000455 ORTHO05D010913 5.3e-35 152.1 190 47.9
Lj3C53T8 Lonicera japonica HOM05D000455 ORTHO05D010913 3.4e-34 149.4 215 43.3
Lj8C207G8 Lonicera japonica HOM05D000455 ORTHO05D010913 2.7e-31 139.8 176 48.3
Lj3C57G7 Lonicera japonica HOM05D000455 ORTHO05D010913 1.0e-30 137.9 141 53.9
Lj8C207T2 Lonicera japonica HOM05D000455 ORTHO05D000434 1.6e-23 114.0 230 32.6
Dinv24847 Davidia involucrata HOM05D000455 ORTHO05D000434 2.0e-18 97.1 215 31.2
Dinv24846 Davidia involucrata HOM05D000455 ORTHO05D000434 6.5e-17 92.0 209 30.1
Dinv13089 Davidia involucrata HOM05D000455 ORTHO05D000434 6.0e-15 85.5 146 36.3
Lj3P60T6 Lonicera japonica HOM05D000455 ORTHO05D234087 5.1e-14 82.4 42 88.1
Dinv24844 Davidia involucrata HOM05D000455 ORTHO05D000434 6.7e-14 82.0 132 35.6
Dinv10489 Davidia involucrata HOM05D000455 ORTHO05D000434 8.7e-14 81.6 216 31.9
Nitab4.5_0003250g0060 Nicotiana tabacum HOM05D000455 ORTHO05D000434 1.9e-13 80.5 214 29.0
Lj3C62G1 Lonicera japonica HOM05D000455 ORTHO05D010913 3.3e-13 79.7 42 71.4
Lj8A206T33 Lonicera japonica HOM05D000455 ORTHO05D000434 4.3e-13 79.3 146 36.3
Dinv10484 Davidia involucrata HOM05D000455 ORTHO05D000434 3.7e-12 76.3 213 27.7
Dinv10486 Davidia involucrata HOM05D000455 ORTHO05D000434 4.8e-12 75.9 234 29.9
ECA232G1721 Erigeron canadensis HOM05D000455 ORTHO05D011724 1.4e-11 74.3 218 28.4
Lj8A565T13 Lonicera japonica HOM05D000455 ORTHO05D010913 2.4e-11 73.6 52 63.5
CSS0008760 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 3.1e-11 73.2 194 28.9
CAN.G963.6 Capsicum annuum HOM05D000455 ORTHO05D000434 2.0e-10 70.5 223 26.0
Peaxi162Scf00391g00432 Petunia axillaris HOM05D000455 ORTHO05D012328 3.4e-10 69.7 126 35.7
Sopen08g030990 Solanum pennellii HOM05D000455 ORTHO05D000434 3.4e-10 69.7 209 27.3
THA.LOC104811470 Tarenaya hassleriana HOM05D000455 ORTHO05D000434 3.4e-10 69.7 181 28.7
PGSC0003DMG401012256 Solanum tuberosum HOM05D000455 ORTHO05D000434 4.5e-10 69.3 209 27.3
CSS0005754 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D012328 7.7e-10 68.6 194 29.9
vmacro11342 Vaccinium macrocarpon HOM05D000455 ORTHO05D000434 7.7e-10 68.6 189 31.7
Lj3C41T3 Lonicera japonica HOM05D000455 ORTHO05D010913 1.0e-09 68.2 42 73.8
CSS0029946 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.7e-09 67.4 230 28.3
ECA246G0977 Erigeron canadensis HOM05D000455 ORTHO05D000434 2.9e-09 66.6 155 31.0
Lj3A53T22 Lonicera japonica HOM05D000455 ORTHO05D010913 2.9e-09 66.6 163 31.9
CSS0010178 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 3.8e-09 66.2 196 30.6
Rhsim02G0245200 Rhododendron simsii HOM05D000455 ORTHO05D000434 5.0e-09 65.9 128 38.3
Hma1.2p1_1094F.1_g256500 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 6.5e-09 65.5 148 29.7
THA.LOC104809819 Tarenaya hassleriana HOM05D000455 ORTHO05D000434 6.5e-09 65.5 141 31.2
vmacro18354 Vaccinium macrocarpon HOM05D000455 ORTHO05D000434 1.1e-08 64.7 131 35.9
CSS0021735 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 3.2e-08 63.2 186 28.0
Potri.005G251700 Populus trichocarpa HOM05D000455 ORTHO05D000434 3.2e-08 63.2 173 30.1
CSS0026143 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 4.2e-08 62.8 195 29.2
Thhalv10018128m.g Eutrema salsugineum HOM05D000455 ORTHO05D000434 4.2e-08 62.8 174 26.4
Gohir.D05G182200 Gossypium hirsutum HOM05D000455 ORTHO05D000434 4.2e-08 62.8 151 30.5
Gorai.009G187500 Gossypium raimondii HOM05D000455 ORTHO05D000434 4.2e-08 62.8 151 30.5
Nitab4.5_0000175g0090 Nicotiana tabacum HOM05D000455 ORTHO05D000434 4.2e-08 62.8 165 29.7
CSS0039323 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 5.5e-08 62.4 188 27.7
Carub.0001s2011 Capsella rubella HOM05D000455 ORTHO05D000434 7.2e-08 62.0 151 29.8
Dinv11542 Davidia involucrata HOM05D000455 ORTHO05D000434 7.2e-08 62.0 219 27.9
Nn5g30967 Nelumbo nucifera HOM05D000455 ORTHO05D000434 9.4e-08 61.6 156 29.5
Nitab4.5_0002793g0050 Nicotiana tabacum HOM05D000455 ORTHO05D000434 9.4e-08 61.6 151 29.8
vmacro11534 Vaccinium macrocarpon HOM05D000455 ORTHO05D000434 9.4e-08 61.6 197 28.4
Actinidia22184 Actinidia chinensis HOM05D000455 ORTHO05D000434 1.2e-07 61.2 123 33.3
HanXRQChr02g0047091 Helianthus annuus HOM05D000455 ORTHO05D011724 1.2e-07 61.2 229 29.3
A07p15560 Brassica napus HOM05D000455 ORTHO05D000434 1.6e-07 60.8 151 27.8
CSS0046598 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.6e-07 60.8 141 31.2
Gohir.A05G179000 Gossypium hirsutum HOM05D000455 ORTHO05D000434 1.6e-07 60.8 143 30.8
Peaxi162Scf00362g00156 Petunia axillaris HOM05D000455 ORTHO05D000434 1.6e-07 60.8 151 30.5
vmacro22559 Vaccinium macrocarpon HOM05D000455 ORTHO05D000434 1.6e-07 60.8 197 28.4
Aa31LG7G4860 Aethionema arabicum HOM05D000455 ORTHO05D000434 2.1e-07 60.5 183 27.3
BraA07t29295Z Brassica rapa HOM05D000455 ORTHO05D000434 2.1e-07 60.5 151 27.8
CSS0009880 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 2.1e-07 60.5 128 34.4
CSS0044646 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 2.1e-07 60.5 195 25.6
CARHR021100 Cardamine hirsuta HOM05D000455 ORTHO05D000434 2.1e-07 60.5 149 28.9
AL2G36450 Arabidopsis lyrata HOM05D000455 ORTHO05D000434 2.7e-07 60.1 195 24.6
BcaC06g34826 Brassica carinata HOM05D000455 ORTHO05D000434 2.7e-07 60.1 151 27.8
C07p22920 Brassica napus HOM05D000455 ORTHO05D000434 2.7e-07 60.1 151 27.8
BolC7t42831H Brassica oleracea HOM05D000455 ORTHO05D000434 2.7e-07 60.1 151 27.8
Dinv01855 Davidia involucrata HOM05D000455 ORTHO05D000434 2.7e-07 60.1 134 38.1
AT1G20640 Arabidopsis thaliana HOM05D000455 ORTHO05D000434 3.6e-07 59.7 149 29.5
CSS0009186 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D012328 3.6e-07 59.7 191 28.3
Nn6g31716 Nelumbo nucifera HOM05D000455 ORTHO05D000434 3.6e-07 59.7 182 28.6
Nitab4.5_0022090g0010 Nicotiana tabacum HOM05D000455 ORTHO05D000434 3.6e-07 59.7 196 28.1
Nitab4.5_0002367g0110 Nicotiana tabacum HOM05D000455 ORTHO05D000434 4.6e-07 59.3 152 29.6
TPR.G38089 Trifolium pratense HOM05D000455 ORTHO05D000434 4.6e-07 59.3 204 27.0
AUR62036843 Chenopodium quinoa HOM05D000455 ORTHO05D000434 6.1e-07 58.9 159 27.0
AUR62040813 Chenopodium quinoa HOM05D000455 ORTHO05D000434 6.1e-07 58.9 159 27.0
AL1G33600 Arabidopsis lyrata HOM05D000455 ORTHO05D000434 7.9e-07 58.5 137 29.9
BcaB03g14309 Brassica carinata HOM05D000455 ORTHO05D000434 7.9e-07 58.5 151 27.2
Hma1.2p1_0507F.1_g168610 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 7.9e-07 58.5 150 29.3
Psat0s498g0160 Pisum sativum HOM05D000455 ORTHO05D000434 7.9e-07 58.5 172 25.6
PGR083G1851 Punica granatum HOM05D000455 ORTHO05D000434 7.9e-07 58.5 137 32.1
Sp5g31480 Schrenkiella parvula HOM05D000455 ORTHO05D000434 7.9e-07 58.5 179 25.7
GSVIVG01013370001 Vitis vinifera HOM05D000455 ORTHO05D000434 7.9e-07 58.5 174 28.7
AT1G76350 Arabidopsis thaliana HOM05D000455 ORTHO05D000434 1.0e-06 58.2 195 24.6
CSS0041013 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.0e-06 58.2 193 31.1
Carub.0002s2324 Capsella rubella HOM05D000455 ORTHO05D000434 1.0e-06 58.2 171 25.7
Dinv38769 Davidia involucrata HOM05D000455 ORTHO05D000434 1.0e-06 58.2 138 32.6
Dinv38772 Davidia involucrata HOM05D000455 ORTHO05D000182 1.0e-06 58.2 138 32.6
Nitab4.5_0007956g0040 Nicotiana tabacum HOM05D000455 ORTHO05D000434 1.0e-06 58.2 204 27.0
Ah.00g000910 Amaranthus hybridus HOM05D000455 ORTHO05D000434 1.4e-06 57.8 155 27.7
BcaB07g32063 Brassica carinata HOM05D000455 ORTHO05D000434 1.4e-06 57.8 149 28.9
BcaB07g32066 Brassica carinata HOM05D000455 ORTHO05D000434 1.4e-06 57.8 149 28.9
BcaC05g25974 Brassica carinata HOM05D000455 ORTHO05D000434 1.4e-06 57.8 149 28.9
A06p16630 Brassica napus HOM05D000455 ORTHO05D000434 1.4e-06 57.8 149 28.9
C05p19260 Brassica napus HOM05D000455 ORTHO05D000434 1.4e-06 57.8 149 28.9
BolC5t30627H Brassica oleracea HOM05D000455 ORTHO05D000434 1.4e-06 57.8 149 28.9
BraA06t24770Z Brassica rapa HOM05D000455 ORTHO05D000434 1.4e-06 57.8 149 28.9
CSS0025654 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.4e-06 57.8 193 31.1
COL.COLO4_36398 Corchorus olitorius HOM05D000455 ORTHO05D000434 1.4e-06 57.8 149 29.5
Nitab4.5_0000783g0180 Nicotiana tabacum HOM05D000455 ORTHO05D000434 1.4e-06 57.8 172 29.1
Thecc.08G060200 Theobroma cacao HOM05D000455 ORTHO05D000434 1.4e-06 57.8 149 29.5
CSS0006544 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.8e-06 57.4 139 30.2
CARHR069900 Cardamine hirsuta HOM05D000455 ORTHO05D000434 1.8e-06 57.4 149 26.8
Thhalv10006790m.g Eutrema salsugineum HOM05D000455 ORTHO05D000434 1.8e-06 57.4 151 27.2
Hund05095 Selenicereus undatus HOM05D000455 ORTHO05D000434 1.8e-06 57.4 148 28.4
TAR376G0326 Trochodendron aralioides HOM05D000455 ORTHO05D000434 1.8e-06 57.4 174 27.0
BcaC08g47134 Brassica carinata HOM05D000455 ORTHO05D000434 2.3e-06 57.0 168 27.4
Dinv34975 Davidia involucrata HOM05D000455 ORTHO05D000434 2.3e-06 57.0 104 33.7
Lsat_1_v5_gn_5_52180 Lactuca sativa HOM05D000455 ORTHO05D011724 2.3e-06 57.0 202 28.2
Actinidia15498 Actinidia chinensis HOM05D000455 ORTHO05D000434 3.0e-06 56.6 147 28.6
Cc08_g16400 Coffea canephora HOM05D000455 ORTHO05D000434 3.0e-06 56.6 149 29.5
Hma1.2p1_0359F.1_g135000 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 3.0e-06 56.6 131 35.1
Sp1g18360 Schrenkiella parvula HOM05D000455 ORTHO05D000434 3.0e-06 56.6 151 27.2
MSTRG.21454 Avicennia marina HOM05D000455 ORTHO05D000434 3.9e-06 56.2 146 30.8
Rhsim02G0245800 Rhododendron simsii HOM05D000455 ORTHO05D023106 3.9e-06 56.2 129 33.3
TAR628G0916 Trochodendron aralioides HOM05D000455 ORTHO05D000434 3.9e-06 56.2 186 28.5
BraA07t31727Z Brassica rapa HOM05D000455 ORTHO05D000434 5.1e-06 55.8 182 26.4
Duzib116G0702 Durio zibethinus HOM05D000455 ORTHO05D000434 5.1e-06 55.8 149 28.2
Gohir.A01G104900 Gossypium hirsutum HOM05D000455 ORTHO05D000434 5.1e-06 55.8 197 25.4
Lalb_Chr02g0141111 Lupinus albus HOM05D000455 ORTHO05D000434 5.1e-06 55.8 213 25.8
Lalb_Chr08g0246441 Lupinus albus HOM05D000455 ORTHO05D000434 5.1e-06 55.8 158 29.7
Medtr3g115400 Medicago truncatula HOM05D000455 ORTHO05D000434 5.1e-06 55.8 202 26.7
EL10Ac1g01940 Beta vulgaris HOM05D000455 ORTHO05D000434 6.7e-06 55.5 152 28.9
A07p41970 Brassica napus HOM05D000455 ORTHO05D000434 6.7e-06 55.5 182 26.4
Rhsim02G0245700 Rhododendron simsii HOM05D000455 ORTHO05D000434 6.7e-06 55.5 129 32.6
Atru.chr13.128 Acer truncatum HOM05D000455 ORTHO05D000434 8.8e-06 55.1 156 26.9
Actinidia17047 Actinidia chinensis HOM05D000455 ORTHO05D000434 8.8e-06 55.1 139 28.8
BcaB03g12860 Brassica carinata HOM05D000455 ORTHO05D000434 8.8e-06 55.1 151 25.8


User provided reference genes

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