Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A252T11 Lonicera japonica HOM05D005970 ORTHO05D007146 5.5e-33 143.7 70 100.0
Lj3A262T16 Lonicera japonica HOM05D005970 ORTHO05D007146 4.2e-09 64.3 32 93.8
MD04G1032500 Malus domestica HOM05D005970 ORTHO05D007146 4.7e-08 60.8 35 80.0
Gohir.A02G013401 Gossypium hirsutum HOM05D005970 ORTHO05D007146 6.1e-08 60.5 32 84.4
Gohir.D02G014300 Gossypium hirsutum HOM05D005970 ORTHO05D007146 8.0e-08 60.1 32 81.2
Gorai.005G017800 Gossypium raimondii HOM05D005970 ORTHO05D007146 8.0e-08 60.1 32 81.2
Prupe.1G181900 Prunus persica HOM05D005970 ORTHO05D007146 8.0e-08 60.1 32 81.2
CAN.G710.55 Capsicum annuum HOM05D005970 ORTHO05D007146 1.4e-07 59.3 33 78.8
Manes.04G050700 Manihot esculenta HOM05D005970 ORTHO05D007146 1.4e-07 59.3 32 78.1
Os01g0900200 Oryza sativa ssp. japonica HOM05D005970 ORTHO05D007146 1.4e-07 59.3 48 58.3
Lj5g0014069 Lotus japonicus HOM05D005970 ORTHO05D007146 2.3e-07 58.5 32 84.4
Nitab4.5_0002313g0060 Nicotiana tabacum HOM05D005970 ORTHO05D007146 3.0e-07 58.2 33 75.8
Solyc09g098450.4 Solanum lycopersicum HOM05D005970 ORTHO05D007146 3.0e-07 58.2 33 75.8
Sopen09g036380 Solanum pennellii HOM05D005970 ORTHO05D007146 3.0e-07 58.2 33 75.8
THA.LOC104800916 Tarenaya hassleriana HOM05D005970 ORTHO05D007146 3.0e-07 58.2 33 72.7
Atru.chr3.1658_Atru.chr3.1659 Acer truncatum HOM05D005970 ORTHO05D007146 4.0e-07 57.8 32 78.1
Atru.chr9.1613 Acer truncatum HOM05D005970 ORTHO05D010500 4.0e-07 57.8 31 83.9
Nitab4.5_0001049g0010 Nicotiana tabacum HOM05D005970 ORTHO05D007146 4.0e-07 57.8 33 75.8
TAR362G0058 Trochodendron aralioides HOM05D005970 ORTHO05D007146 4.0e-07 57.8 32 78.1
Aqoxy2G04048 Aquilegia oxysepala HOM05D005970 ORTHO05D007146 6.7e-07 57.0 32 78.1
CARHR005310 Cardamine hirsuta HOM05D005970 ORTHO05D007146 6.7e-07 57.0 33 72.7
Peaxi162Scf00286g00235 Petunia axillaris HOM05D005970 ORTHO05D007146 6.7e-07 57.0 32 78.1
HPP92_002722 Vanilla planifolia HOM05D005970 ORTHO05D007146 6.7e-07 57.0 33 72.7
Aa31LG1G8570 Aethionema arabicum HOM05D005970 ORTHO05D007146 8.8e-07 56.6 33 69.7
arahy.Tifrunner.gnm1.ann1.ILR90A Arachis hypogaea HOM05D005970 ORTHO05D007146 8.8e-07 56.6 32 78.1
arahy.Tifrunner.gnm1.ann1.R0ZLJW Arachis hypogaea HOM05D005970 ORTHO05D007146 8.8e-07 56.6 32 78.1
CDE09G0649 Ceratophyllum demersum HOM05D005970 ORTHO05D007146 8.8e-07 56.6 30 80.0
Duzib151G0884 Durio zibethinus HOM05D005970 ORTHO05D007146 8.8e-07 56.6 32 75.0
HanXRQChr17g0557031 Helianthus annuus HOM05D005970 ORTHO05D007146 8.8e-07 56.6 32 75.0
Rhsim09G0037500 Rhododendron simsii HOM05D005970 ORTHO05D007146 8.8e-07 56.6 32 78.1
Sabra02G0176700 Salix brachista HOM05D005970 ORTHO05D007146 8.8e-07 56.6 32 78.1
AL1G15700 Arabidopsis lyrata HOM05D005970 ORTHO05D007146 1.2e-06 56.2 33 69.7
AT1G05790 Arabidopsis thaliana HOM05D005970 ORTHO05D007146 1.2e-06 56.2 33 69.7
Carub.0001s0513 Capsella rubella HOM05D005970 ORTHO05D007146 1.2e-06 56.2 33 69.7
ECA234G4469 Erigeron canadensis HOM05D005970 ORTHO05D007146 1.2e-06 56.2 32 71.9
Thhalv10006938m.g Eutrema salsugineum HOM05D005970 ORTHO05D007146 1.2e-06 56.2 33 69.7
Lsat_1_v5_gn_4_37800 Lactuca sativa HOM05D005970 ORTHO05D007146 1.2e-06 56.2 32 75.0
Lalb_Chr06g0164591 Lupinus albus HOM05D005970 ORTHO05D007146 1.2e-06 56.2 36 77.8
Sp1g04590 Schrenkiella parvula HOM05D005970 ORTHO05D007146 1.2e-06 56.2 33 69.7
ATR0618G312 Amborella trichopoda HOM05D005970 ORTHO05D007146 1.5e-06 55.8 32 75.0
A08p36290 Brassica napus HOM05D005970 ORTHO05D007146 1.5e-06 55.8 33 69.7
C08p02230 Brassica napus HOM05D005970 ORTHO05D007146 1.5e-06 55.8 33 69.7
BolC8t47015H Brassica oleracea HOM05D005970 ORTHO05D007146 1.5e-06 55.8 33 69.7
BraA08t35533Z Brassica rapa HOM05D005970 ORTHO05D007146 1.5e-06 55.8 33 69.7
AUR62042870 Chenopodium quinoa HOM05D005970 ORTHO05D007146 1.5e-06 55.8 32 78.1
Ciclev10023314m.g Citrus clementina HOM05D005970 ORTHO05D007146 1.5e-06 55.8 32 81.2
MBI08_g17320_MAGBIO Magnolia biondii HOM05D005970 ORTHO05D007146 1.5e-06 55.8 32 75.0
RcHm_v2.0_Chr4g0408981 Rosa chinensis HOM05D005970 ORTHO05D007146 1.5e-06 55.8 32 75.0
CANSAT80G1971 Cannabis sativa HOM05D005970 ORTHO05D007146 2.0e-06 55.5 32 75.0
Cpa.g.sc164.8 Carica papaya HOM05D005970 ORTHO05D007146 2.0e-06 55.5 32 78.1
MELO3C011504.2 Cucumis melo HOM05D005970 ORTHO05D007146 2.0e-06 55.5 32 78.1
CsaV3_6G003170 Cucumis sativus L. HOM05D005970 ORTHO05D007146 2.0e-06 55.5 32 78.1
DCAR_028457 Daucus carota HOM05D005970 ORTHO05D007146 2.0e-06 55.5 32 75.0
Potri.002G231567 Populus trichocarpa HOM05D005970 ORTHO05D007146 2.0e-06 55.5 32 75.0
Potri.014G150800 Populus trichocarpa HOM05D005970 ORTHO05D007146 2.0e-06 55.5 32 75.0
Sabra14G0114200 Salix brachista HOM05D005970 ORTHO05D007146 2.0e-06 55.5 32 75.0
HPP92_001247 Vanilla planifolia HOM05D005970 ORTHO05D007146 2.0e-06 55.5 33 69.7
HPP92_001263 Vanilla planifolia HOM05D005970 ORTHO05D007146 2.0e-06 55.5 33 69.7
Zm00001eb144480 Zea mays HOM05D005970 ORTHO05D007146 2.0e-06 55.5 32 71.9
CSS0014236 Camellia sinensis var. sinensis HOM05D005970 ORTHO05D007146 2.6e-06 55.1 32 75.0
Cc00_g08710 Coffea canephora HOM05D005970 ORTHO05D007146 2.6e-06 55.1 32 75.0
Dinv22666 Davidia involucrata HOM05D005970 ORTHO05D007146 2.6e-06 55.1 32 78.1
Ah.12g062330 Amaranthus hybridus HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 75.0
CiPaw.01G106400 Carya illinoinensis HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 71.9
Ca_11416_v3 Cicer arietinum L. HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 78.1
FvH4_4g11690 Fragaria vesca HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 75.0
FAN12G0387 Fragaria x ananassa HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 75.0
FAN12G1273 Fragaria x ananassa HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 75.0
Glyma.10G297100 Glycine max HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 78.1
Glyma.20G248000 Glycine max HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 78.1
Medtr1g116780 Medicago truncatula HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 78.1
PGR083G2204 Punica granatum HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 68.8
Thecc.04G181600 Theobroma cacao HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 71.9
VMungo0720G0532 Vigna mungo HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 78.1
GSVIVG01013548001 Vitis vinifera HOM05D005970 ORTHO05D007146 3.3e-06 54.7 32 78.1
ClCG08G003970 Citrullus lanatus HOM05D005970 ORTHO05D007146 4.4e-06 54.3 32 75.0
Psat6g242520 Pisum sativum HOM05D005970 ORTHO05D007146 4.4e-06 54.3 32 75.0
TPR.G8892 Trifolium pratense HOM05D005970 ORTHO05D007146 4.4e-06 54.3 32 75.0
Actinidia32934 Actinidia chinensis HOM05D005970 ORTHO05D007146 5.7e-06 53.9 32 68.8
COL.COLO4_24350 Corchorus olitorius HOM05D005970 ORTHO05D007146 5.7e-06 53.9 32 68.8
vmacro00561 Vaccinium macrocarpon HOM05D005970 ORTHO05D007146 5.7e-06 53.9 32 71.9
FAN07G1016 Fragaria x ananassa HOM05D005970 ORTHO05D007146 7.5e-06 53.5 32 75.0
Phvul.007G002300 Phaseolus vulgaris HOM05D005970 ORTHO05D007146 7.5e-06 53.5 32 75.0
QL10p046561 Quercus lobata HOM05D005970 ORTHO05D007146 9.7e-06 53.1 32 71.9


User provided reference genes

Program Settings