Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 2.2e-73 278.9 138 100.0
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 4.1e-56 221.5 136 79.4
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 2.0e-55 219.2 135 83.0
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 3.5e-55 218.4 115 87.8
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 1.0e-54 216.9 115 87.0
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 2.9e-54 215.3 136 78.7
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 5.0e-54 214.5 135 78.5
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 8.5e-54 213.8 116 83.6
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 1.1e-53 213.4 116 83.6
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 1.1e-53 213.4 116 83.6
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 1.5e-53 213.0 135 78.5
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 1.5e-53 213.0 137 76.6
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 1.5e-53 213.0 115 86.1
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 2.5e-53 212.2 137 75.2
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 2.5e-53 212.2 116 84.5
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 3.2e-53 211.8 114 86.0
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 4.2e-53 211.5 135 76.3
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 4.2e-53 211.5 121 81.0
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 5.5e-53 211.1 121 81.8
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 5.5e-53 211.1 121 81.8
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 5.5e-53 211.1 113 86.7
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 9.4e-53 210.3 121 81.0
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 9.4e-53 210.3 132 75.8
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 1.2e-52 209.9 138 73.9
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 1.2e-52 209.9 121 81.0
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 1.6e-52 209.5 116 82.8
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 1.6e-52 209.5 121 81.8
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 1.6e-52 209.5 118 83.1
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 1.6e-52 209.5 118 83.1
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 1.6e-52 209.5 118 83.1
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 1.6e-52 209.5 118 83.1
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 1.6e-52 209.5 118 83.1
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 1.6e-52 209.5 113 85.0
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 1.6e-52 209.5 116 82.8
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 1.6e-52 209.5 116 82.8
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 2.1e-52 209.1 118 83.1
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 2.1e-52 209.1 115 82.6
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 2.1e-52 209.1 115 85.2
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 2.1e-52 209.1 135 77.8
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 2.1e-52 209.1 135 73.3
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 2.1e-52 209.1 135 73.3
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 2.1e-52 209.1 135 73.3
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 2.1e-52 209.1 113 84.1
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 2.1e-52 209.1 115 82.6
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 2.7e-52 208.8 136 77.2
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 3.6e-52 208.4 114 84.2
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 3.6e-52 208.4 128 76.6
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 4.7e-52 208.0 112 84.8
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 4.7e-52 208.0 121 79.3
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 4.7e-52 208.0 133 72.9
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 8.0e-52 207.2 137 73.7
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 8.0e-52 207.2 116 80.2
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 8.0e-52 207.2 113 84.1
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 8.0e-52 207.2 115 84.3
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 8.0e-52 207.2 135 71.9
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 8.0e-52 207.2 113 85.0
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 1.0e-51 206.8 119 82.4
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 1.8e-51 206.1 127 75.6
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 1.8e-51 206.1 131 74.8
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 2.3e-51 205.7 135 71.9
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 2.3e-51 205.7 116 81.9
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 3.0e-51 205.3 116 81.0
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 3.0e-51 205.3 116 81.9
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 3.9e-51 204.9 130 75.4
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 3.9e-51 204.9 130 75.4
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 3.9e-51 204.9 116 81.9
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 3.9e-51 204.9 121 79.3
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 5.2e-51 204.5 113 84.1
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 5.2e-51 204.5 134 76.1
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 5.2e-51 204.5 127 76.4
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 6.7e-51 204.1 133 72.2
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 8.8e-51 203.8 116 80.2
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 8.8e-51 203.8 121 78.5
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 8.8e-51 203.8 119 79.0
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 8.8e-51 203.8 113 83.2
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 1.1e-50 203.4 135 71.1
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 1.5e-50 203.0 127 76.4
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 1.5e-50 203.0 127 74.8
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 1.5e-50 203.0 115 81.7
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 1.5e-50 203.0 116 80.2
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 2.0e-50 202.6 121 77.7
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 2.0e-50 202.6 121 77.7
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 2.0e-50 202.6 121 77.7
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 2.0e-50 202.6 113 83.2
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 2.0e-50 202.6 113 83.2
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 2.0e-50 202.6 132 72.7
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 2.6e-50 202.2 121 76.9
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.3e-50 201.8 121 76.9
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 4.4e-50 201.4 121 77.7
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 4.4e-50 201.4 121 77.7
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 4.4e-50 201.4 121 76.9
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 4.4e-50 201.4 113 82.3
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 5.7e-50 201.1 132 72.7
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 7.4e-50 200.7 116 80.2
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 9.7e-50 200.3 137 71.5
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 1.7e-49 199.5 113 79.6
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.2e-49 199.1 121 76.0
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 3.7e-49 198.4 150 65.3
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 3.7e-49 198.4 113 78.8
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 8.2e-49 197.2 135 68.9
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 1.2e-47 193.4 130 70.0
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 3.5e-47 191.8 119 77.3
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 5.9e-47 191.0 151 64.2
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 7.7e-47 190.7 132 66.7
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 1.9e-45 186.0 113 74.3
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 1.2e-44 183.3 159 61.6
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 2.1e-44 182.6 113 71.7
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 4.7e-44 181.4 128 67.2
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 4.7e-44 181.4 113 70.8
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 4.0e-43 178.3 168 54.8
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 8.8e-43 177.2 168 55.4
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.5e-42 176.4 173 53.8
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 9.1e-40 167.2 113 65.5
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 7.2e-37 157.5 89 83.1
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 2.7e-36 155.6 110 63.6
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 1.3e-33 146.7 80 83.8
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 3.7e-33 145.2 142 50.7
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 4.9e-33 144.8 81 82.7
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-23 112.8 79 65.8
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 5.0e-22 108.2 58 86.2
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 1.2e-12 77.0 128 32.8
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 3.6e-12 75.5 49 71.4
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 6.4e-09 64.7 62 51.6
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 1.4e-08 63.5 109 36.7
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 1.6e-07 60.1 55 54.5


User provided reference genes

Program Settings