Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A157T53 Lonicera japonica HOM05D005578 ORTHO05D006969 7.5e-68 260.4 130 100.0
DCAR_028436 Daucus carota HOM05D005578 ORTHO05D006969 3.5e-25 118.6 128 53.9
Dinv33195 Davidia involucrata HOM05D005578 ORTHO05D006969 3.0e-24 115.5 128 50.8
Manes.04G036900 Manihot esculenta HOM05D005578 ORTHO05D006969 1.1e-23 113.6 128 50.8
Lsat_1_v5_gn_2_34381 Lactuca sativa HOM05D005578 ORTHO05D006969 1.5e-23 113.2 128 52.3
Nn3g18569 Nelumbo nucifera HOM05D005578 ORTHO05D006969 5.6e-23 111.3 128 50.0
ECA232G2403 Erigeron canadensis HOM05D005578 ORTHO05D006969 7.3e-23 110.9 128 51.6
CSS0000228 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 9.5e-23 110.5 128 52.3
Hma1.2p1_0150F.1_g066670 Hydrangea macrophylla HOM05D005578 ORTHO05D006969 1.6e-22 109.8 128 52.3
Haze_01375 Corylus avellana HOM05D005578 ORTHO05D006969 2.1e-22 109.4 130 50.8
CSS0036062 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 2.8e-22 109.0 128 51.6
Sc18g0007160 Simmondsia chinensis HOM05D005578 ORTHO05D006969 2.8e-22 109.0 128 47.7
Medtr1g008370 Medicago truncatula HOM05D005578 ORTHO05D006969 3.6e-22 108.6 129 48.1
CiPaw.02G101100 Carya illinoinensis HOM05D005578 ORTHO05D006969 1.1e-21 107.1 128 50.8
AUR62030923 Chenopodium quinoa HOM05D005578 ORTHO05D006969 1.1e-21 107.1 133 46.6
Lalb_Chr10g0096771 Lupinus albus HOM05D005578 ORTHO05D006969 1.4e-21 106.7 129 47.3
AUR62027084 Chenopodium quinoa HOM05D005578 ORTHO05D006969 1.8e-21 106.3 133 46.6
Ca_12803_v3 Cicer arietinum L. HOM05D005578 ORTHO05D006969 1.8e-21 106.3 129 48.1
Ca_12815_v3 Cicer arietinum L. HOM05D005578 ORTHO05D006969 1.8e-21 106.3 129 48.1
Nitab4.5_0002087g0070 Nicotiana tabacum HOM05D005578 ORTHO05D006969 3.1e-21 105.5 129 47.3
QL10p053362 Quercus lobata HOM05D005578 ORTHO05D006969 3.1e-21 105.5 129 51.2
QL10p054496 Quercus lobata HOM05D005578 ORTHO05D006969 3.1e-21 105.5 129 51.2
Rhsim09G0010700 Rhododendron simsii HOM05D005578 ORTHO05D006969 3.1e-21 105.5 128 50.0
TPR.G12104 Trifolium pratense HOM05D005578 ORTHO05D006969 3.1e-21 105.5 129 46.5
Atru.chr4.1387 Acer truncatum HOM05D005578 ORTHO05D006969 4.0e-21 105.1 128 50.0
Nitab4.5_0000387g0110 Nicotiana tabacum HOM05D005578 ORTHO05D006969 5.2e-21 104.8 129 47.3
Prupe.1G080200 Prunus persica HOM05D005578 ORTHO05D006969 5.2e-21 104.8 128 47.7
PGSC0003DMG400028219 Solanum tuberosum HOM05D005578 ORTHO05D006969 5.2e-21 104.8 129 46.5
TAR365G0588 Trochodendron aralioides HOM05D005578 ORTHO05D006969 6.8e-21 104.4 128 50.8
vmacro00704 Vaccinium macrocarpon HOM05D005578 ORTHO05D006969 8.9e-21 104.0 128 50.0
Solyc10g081540.2 Solanum lycopersicum HOM05D005578 ORTHO05D006969 2.0e-20 102.8 129 46.5
Sopen10g032050 Solanum pennellii HOM05D005578 ORTHO05D006969 2.0e-20 102.8 129 46.5
Hund00394 Selenicereus undatus HOM05D005578 ORTHO05D006969 2.6e-20 102.4 131 46.6
Cpa.g.sc9.352 Carica papaya HOM05D005578 ORTHO05D006969 3.4e-20 102.1 130 49.2
Psat6g034120 Pisum sativum HOM05D005578 ORTHO05D006969 3.4e-20 102.1 129 45.7
EL10Ac9g22122 Beta vulgaris HOM05D005578 ORTHO05D006969 7.6e-20 100.9 132 46.2
MD04G1048400 Malus domestica HOM05D005578 ORTHO05D006969 7.6e-20 100.9 128 46.1
MBI08_g25556_MAGBIO Magnolia biondii HOM05D005578 ORTHO05D006969 9.9e-20 100.5 128 47.7
CAN.G128.150 Capsicum annuum HOM05D005578 ORTHO05D006969 1.3e-19 100.1 129 45.7
MELO3C017758.2 Cucumis melo HOM05D005578 ORTHO05D006969 1.3e-19 100.1 128 46.9
Actinidia27108 Actinidia chinensis HOM05D005578 ORTHO05D006969 1.7e-19 99.8 128 46.9
ClCG07G015240 Citrullus lanatus HOM05D005578 ORTHO05D006969 1.7e-19 99.8 128 47.7
CsaV3_4G002830 Cucumis sativus L. HOM05D005578 ORTHO05D006969 2.2e-19 99.4 128 46.9
Lj2g0024445 Lotus japonicus HOM05D005578 ORTHO05D006969 2.2e-19 99.4 129 44.2
Phvul.005G177500 Phaseolus vulgaris HOM05D005578 ORTHO05D006969 2.2e-19 99.4 129 43.4
CSS0020752 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 2.9e-19 99.0 123 50.4
PSO675G5381 Papaver somniferum HOM05D005578 ORTHO05D006969 2.9e-19 99.0 129 47.3
arahy.Tifrunner.gnm1.ann1.22GNET Arachis hypogaea HOM05D005578 ORTHO05D006969 4.9e-19 98.2 128 46.9
arahy.Tifrunner.gnm1.ann1.SET2JR Arachis hypogaea HOM05D005578 ORTHO05D006969 4.9e-19 98.2 128 46.9
Ah.01g024150 Amaranthus hybridus HOM05D005578 ORTHO05D006969 6.4e-19 97.8 133 42.1
Thhalv10005976m.g Eutrema salsugineum HOM05D005578 ORTHO05D006969 6.4e-19 97.8 128 47.7
HanXRQChr02g0059791 Helianthus annuus HOM05D005578 ORTHO05D006969 8.4e-19 97.4 128 49.2
Sp5g03550 Schrenkiella parvula HOM05D005578 ORTHO05D006969 8.4e-19 97.4 128 43.8
GSVIVG01038127001 Vitis vinifera HOM05D005578 ORTHO05D006969 8.4e-19 97.4 128 49.2
CANSAT78G2511 Cannabis sativa HOM05D005578 ORTHO05D006969 1.4e-18 96.7 128 45.3
Lj1g0014139 Lotus japonicus HOM05D005578 ORTHO05D006969 1.4e-18 96.7 129 43.4
VMungo1080G0492 Vigna mungo HOM05D005578 ORTHO05D006969 1.9e-18 96.3 128 43.8
THA.LOC104802321 Tarenaya hassleriana HOM05D005578 ORTHO05D006969 2.4e-18 95.9 128 45.3
Cc00_g24800 Coffea canephora HOM05D005578 ORTHO05D006969 3.2e-18 95.5 128 48.4
Eucgr.A00019 Eucalyptus grandis HOM05D005578 ORTHO05D006969 3.2e-18 95.5 129 45.7
PSO017G0139 Papaver somniferum HOM05D005578 ORTHO05D006969 5.4e-18 94.7 128 43.8
Sed0004414 Sechium edule HOM05D005578 ORTHO05D006969 5.4e-18 94.7 128 46.1
Aa31LG10G13930 Aethionema arabicum HOM05D005578 ORTHO05D006969 7.1e-18 94.4 128 45.3
PSO478G3531 Papaver somniferum HOM05D005578 ORTHO05D006969 9.2e-18 94.0 128 46.1
Thhalv10028620m.g Eutrema salsugineum HOM05D005578 ORTHO05D006969 1.6e-17 93.2 128 46.1
FAN07G2607 Fragaria x ananassa HOM05D005578 ORTHO05D006969 2.7e-17 92.4 128 45.3
Peaxi162Scf00568g00519 Petunia axillaris HOM05D005578 ORTHO05D006969 2.7e-17 92.4 127 44.1
Aqoxy5G03977 Aquilegia oxysepala HOM05D005578 ORTHO05D006969 6.0e-17 91.3 128 45.3
Migut.N01914 Erythranthe guttata HOM05D005578 ORTHO05D006969 6.0e-17 91.3 128 46.1
RcHm_v2.0_Chr4g0406211 Rosa chinensis HOM05D005578 ORTHO05D006969 6.0e-17 91.3 128 44.5
ATR0743G025 Amborella trichopoda HOM05D005578 ORTHO05D006969 1.3e-16 90.1 132 45.5
Potri.006G123700 Populus trichocarpa HOM05D005578 ORTHO05D006969 1.7e-16 89.7 129 43.4
Glyma.15G008200 Glycine max HOM05D005578 ORTHO05D006969 3.9e-16 88.6 129 41.1
Carub.0005s2633 Capsella rubella HOM05D005578 ORTHO05D006969 5.1e-16 88.2 128 43.8
SGA_v2.0_scaffold81G26092 Striga asiatica HOM05D005578 ORTHO05D006969 5.1e-16 88.2 128 44.5
AT3G59630 Arabidopsis thaliana HOM05D005578 ORTHO05D006969 6.6e-16 87.8 128 43.8
BcaC07g40470 Brassica carinata HOM05D005578 ORTHO05D006969 6.6e-16 87.8 128 40.6
A09p51890 Brassica napus HOM05D005578 ORTHO05D006969 6.6e-16 87.8 128 43.0
BraA09t40625Z Brassica rapa HOM05D005578 ORTHO05D006969 6.6e-16 87.8 128 43.0
AL5G41640 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 8.7e-16 87.4 128 44.5
FAN12G1674 Fragaria x ananassa HOM05D005578 ORTHO05D006969 8.7e-16 87.4 128 43.0
FAN12G2406 Fragaria x ananassa HOM05D005578 ORTHO05D006969 8.7e-16 87.4 128 43.0
FvH4_4g10580 Fragaria vesca HOM05D005578 ORTHO05D006969 1.9e-15 86.3 128 42.2
Duzib084G0701 Durio zibethinus HOM05D005578 ORTHO05D006969 2.5e-15 85.9 128 41.4
COL.COLO4_38536 Corchorus olitorius HOM05D005578 ORTHO05D006969 4.3e-15 85.1 128 39.8
Sabra06G0097900 Salix brachista HOM05D005578 ORTHO05D006969 4.3e-15 85.1 128 41.4
BolC8t51064H Brassica oleracea HOM05D005578 ORTHO05D006969 1.6e-14 83.2 128 40.6
Gohir.A09G176200 Gossypium hirsutum HOM05D005578 ORTHO05D006969 1.6e-14 83.2 128 40.6
Gohir.D09G171900 Gossypium hirsutum HOM05D005578 ORTHO05D006969 1.6e-14 83.2 128 40.6
Gorai.006G193800 Gossypium raimondii HOM05D005578 ORTHO05D006969 1.6e-14 83.2 128 40.6
BcaC07g40493 Brassica carinata HOM05D005578 ORTHO05D006969 2.1e-14 82.8 128 39.8
C08p34620 Brassica napus HOM05D005578 ORTHO05D006969 2.1e-14 82.8 128 39.8
MSTRG.28018 Avicennia marina HOM05D005578 ORTHO05D006969 2.8e-14 82.4 128 42.2
FAN22G0827 Fragaria x ananassa HOM05D005578 ORTHO05D006969 2.8e-14 82.4 128 43.8
unitig_21.g20051 Utricularia gibba HOM05D005578 ORTHO05D006969 2.8e-14 82.4 128 44.5
CARHR220950 Cardamine hirsuta HOM05D005578 ORTHO05D006969 3.6e-14 82.0 128 39.1
SalBow4G1988 Salvia bowleyana HOM05D005578 ORTHO05D006969 6.2e-14 81.3 135 41.5
SHI16666 Sapria himalayana HOM05D005578 ORTHO05D006969 1.4e-13 80.1 126 40.5
SalBow4G1580 Salvia bowleyana HOM05D005578 ORTHO05D006969 1.8e-13 79.7 135 41.5
CDE08G0459 Ceratophyllum demersum HOM05D005578 ORTHO05D006969 3.1e-13 79.0 128 38.3
Thecc.03G041600 Theobroma cacao HOM05D005578 ORTHO05D006969 9.0e-13 77.4 128 37.5
AL5G41540 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 3.4e-12 75.5 115 43.5
AL5G41610 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 3.4e-12 75.5 115 43.5
Mapoly0065s0036 Marchantia polymorpha HOM05D005578 ORTHO05D006969 5.8e-12 74.7 128 35.9
SEGI_35608 Sequoiadendron giganteum HOM05D005578 ORTHO05D006969 1.3e-11 73.6 134 38.1
HPP92_007603 Vanilla planifolia HOM05D005578 ORTHO05D006969 3.2e-10 68.9 128 37.5
Cc07_g18700 Coffea canephora HOM05D005578 ORTHO05D006969 7.1e-10 67.8 57 59.6
Pp3c8_4090 Physcomitrium patens HOM05D005578 ORTHO05D006969 1.2e-09 67.0 128 36.7
Cc07_g18710 Coffea canephora HOM05D005578 ORTHO05D006969 1.6e-09 66.6 57 57.9
Zm00001eb064030 Zea mays HOM05D005578 ORTHO05D006969 2.1e-09 66.2 128 35.9
Cc00_g28400 Coffea canephora HOM05D005578 ORTHO05D006969 3.9e-08 62.0 57 57.9
Os11g0265600 Oryza sativa ssp. japonica HOM05D005578 ORTHO05D006969 3.9e-08 62.0 128 35.2
PGR083G2150 Punica granatum HOM05D005578 ORTHO05D006969 3.9e-08 62.0 85 45.9
Ciclev10020255m.g Citrus clementina HOM05D005578 ORTHO05D006969 1.9e-07 59.7 85 44.7
CANSAT35G1372 Cannabis sativa HOM05D005578 ORTHO05D006969 5.6e-07 58.2 88 43.2
TWI63G0500 Tripterygium wilfordii HOM05D005578 ORTHO05D006969 8.1e-06 54.3 85 42.4


User provided reference genes

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