Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 2.5e-212 741.9 384 100.0
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 5.8e-193 677.6 390 91.3
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 4.0e-125 452.2 335 66.9
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.1e-124 450.7 392 61.5
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 4.8e-123 445.3 334 65.3
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 1.3e-120 437.2 348 63.2
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 6.5e-120 434.9 314 66.9
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.6e-113 413.7 393 57.5
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 5.9e-113 411.8 380 56.1
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 4.7e-110 402.1 367 58.6
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 6.1e-110 401.7 339 61.7
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 5.4e-106 388.7 270 69.3
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 2.0e-105 386.7 405 53.1
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 4.5e-105 385.6 328 59.1
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 6.6e-104 381.7 391 53.7
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 6.6e-104 381.7 358 55.9
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 2.8e-102 376.3 315 60.6
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 8.0e-102 374.8 341 55.1
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 2.6e-100 369.8 354 54.8
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 2.6e-100 369.8 335 56.1
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 4.4e-100 369.0 355 54.1
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 6.4e-99 365.2 346 58.1
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 8.3e-99 364.8 332 56.9
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 7.0e-98 361.7 337 55.8
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 3.5e-97 359.4 309 55.3
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 4.6e-97 359.0 392 50.5
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 7.8e-97 358.2 323 54.2
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 3.0e-96 356.3 376 51.1
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 5.0e-96 355.5 370 52.4
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 1.5e-95 354.0 300 57.3
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 2.5e-95 353.2 322 52.8
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.6e-94 350.5 323 54.2
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 2.1e-94 350.1 327 52.6
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 4.7e-94 349.0 346 53.2
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.4e-93 347.4 376 50.0
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 2.3e-93 346.7 384 50.3
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 3.1e-93 346.3 323 52.6
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 5.2e-93 345.5 342 52.3
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 8.9e-93 344.7 397 48.4
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 1.2e-92 344.4 340 52.4
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 2.0e-92 343.6 236 70.8
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 4.4e-92 342.4 339 51.6
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 7.5e-92 341.7 329 52.6
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 9.8e-92 341.3 377 50.1
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.7e-91 340.5 282 57.8
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 1.1e-90 337.8 384 48.4
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 1.9e-90 337.0 362 49.7
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 1.9e-90 337.0 331 54.1
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 2.4e-90 336.7 299 56.5
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 3.2e-90 336.3 329 52.9
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 9.2e-90 334.7 325 52.0
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 2.0e-89 333.6 346 52.0
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 4.6e-89 332.4 346 49.1
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 1.3e-88 330.9 386 48.2
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 1.3e-88 330.9 314 52.9
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 5.0e-88 328.9 381 47.2
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 5.0e-88 328.9 336 49.7
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 6.6e-88 328.6 335 51.9
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 8.6e-88 328.2 335 51.9
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 1.1e-87 327.8 379 49.1
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 1.9e-87 327.0 312 52.9
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 4.3e-87 325.9 329 52.0
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 6.2e-86 322.0 393 48.1
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 2.0e-84 317.0 348 50.3
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 2.6e-84 316.6 312 52.6
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 4.4e-84 315.8 311 50.5
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 5.8e-84 315.5 330 49.7
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 2.2e-83 313.5 296 55.7
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 4.1e-82 309.3 334 48.5
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 5.4e-82 308.9 325 48.9
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.7e-80 303.9 354 47.7
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 1.7e-80 303.9 316 50.9
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.9e-80 302.8 418 45.9
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 5.1e-80 302.4 304 52.3
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 4.3e-79 299.3 339 46.6
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.8e-78 296.6 354 46.0
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 8.1e-78 295.0 366 48.4
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 1.1e-77 294.7 315 48.9
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.1e-77 294.7 315 48.6
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.8e-77 293.9 353 45.9
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 2.3e-77 293.5 319 44.5
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 4.0e-77 292.7 367 43.6
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 3.4e-76 289.7 331 48.6
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 4.6e-73 279.3 340 45.9
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.0e-72 276.6 247 54.3
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 3.0e-72 276.6 291 48.8
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.8e-69 267.3 310 46.1
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.4e-69 266.9 263 54.8
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 2.2e-67 260.4 301 43.2
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 1.1e-66 258.1 392 40.6
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 4.0e-61 239.6 348 41.7
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.0e-60 237.3 266 50.8
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 2.0e-60 237.3 298 43.3
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 4.9e-59 232.6 333 41.1
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 6.0e-57 225.7 295 42.7
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 1.8e-56 224.2 337 39.2
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.5e-55 221.1 330 40.3
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 1.3e-54 218.0 324 40.1
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 2.1e-54 217.2 334 39.2
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 2.8e-54 216.9 324 39.8
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 3.6e-54 216.5 321 40.2
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 6.2e-54 215.7 350 36.9
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 3.1e-53 213.4 388 37.4
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 9.0e-53 211.8 157 67.5
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 2.6e-52 210.3 196 58.2
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 1.7e-51 207.6 281 38.1
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 2.2e-51 207.2 367 38.1
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.9e-51 206.8 324 37.0
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 3.8e-51 206.5 324 38.9
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.1e-50 204.9 180 52.8
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 4.2e-50 203.0 304 37.8
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 1.9e-47 194.1 280 41.1
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 2.1e-46 190.7 178 52.8
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 2.2e-43 180.6 323 35.0
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 2.9e-43 180.3 377 33.7
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 1.9e-42 177.6 187 55.1
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 2.7e-41 173.7 293 35.2
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 4.6e-41 172.9 122 68.0
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.1e-39 168.3 311 36.7
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.1e-38 164.1 313 34.5
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 2.0e-36 157.5 169 43.2
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 4.2e-34 149.8 119 62.2
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 2.8e-30 137.1 322 28.3
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 4.8e-30 136.3 100 66.0
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.7e-27 127.9 89 62.9
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 1.1e-26 125.2 263 31.2
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 1.9e-26 124.4 187 40.6
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 5.5e-26 122.9 308 29.5
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.2e-25 121.7 123 50.4
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.8e-24 117.9 140 48.6
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 3.4e-20 103.6 83 60.2
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.7e-19 101.3 85 57.6
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.7e-19 101.3 159 42.8
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 8.5e-19 99.0 220 33.6
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 1.1e-18 98.6 190 35.3
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 1.6e-17 94.7 183 35.5
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 1.7e-14 84.7 72 61.1
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 2.4e-13 80.9 71 56.3
HanXRQChr13g0391121 Helianthus annuus HOM05D000321 ORTHO05D000204 5.3e-13 79.7 128 44.5
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 4.5e-12 76.6 118 43.2
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 5.9e-12 76.3 49 71.4
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 5.9e-12 76.3 108 41.7
Solyc04g026000.2 Solanum lycopersicum HOM05D003570 ORTHO05D004207 7.7e-12 75.9 133 37.6
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 1.3e-11 75.1 115 36.5
CSS0039637 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 2.2e-11 74.3 97 57.7
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.9e-11 73.9 168 33.3
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 8.5e-11 72.4 145 30.3
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.5e-10 69.7 141 40.4
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.0e-07 61.2 111 45.0
CAN.G189.38 Capsicum annuum HOM05D003570 ORTHO05D004207 3.3e-07 60.5 109 37.6
HanXRQChr01g0013931 Helianthus annuus HOM05D000411 ORTHO05D000310 3.7e-06 57.0 104 44.2
HanXRQChr03g0067881 Helianthus annuus HOM05D000411 ORTHO05D004207 3.7e-06 57.0 104 44.2


User provided reference genes

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