Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 1.4e-108 396.4 204 100.0
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 3.9e-87 325.1 201 82.1
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.1e-86 323.6 201 81.6
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 6.2e-85 317.8 201 80.1
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 1.8e-84 316.2 204 77.9
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 4.0e-84 315.1 204 77.9
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 8.9e-84 313.9 201 79.6
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 1.2e-83 313.5 204 77.5
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.2e-83 313.5 204 77.9
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.5e-83 313.2 204 77.9
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 7.6e-83 310.8 204 77.9
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 9.9e-83 310.5 203 77.8
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 9.9e-83 310.5 200 79.5
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 3.7e-82 308.5 201 77.6
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 6.4e-82 307.8 203 76.4
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 6.4e-82 307.8 204 76.5
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 6.4e-82 307.8 203 77.8
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 6.4e-82 307.8 204 77.9
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 8.4e-82 307.4 204 76.5
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 2.4e-81 305.8 204 77.9
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 5.4e-81 304.7 203 77.3
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 1.2e-80 303.5 204 76.5
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 1.6e-80 303.1 203 76.4
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 1.6e-80 303.1 204 75.0
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.6e-80 303.1 204 75.0
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 1.6e-80 303.1 203 75.4
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 2.1e-80 302.8 200 75.5
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 2.1e-80 302.8 204 77.5
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 3.5e-80 302.0 204 76.5
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 3.5e-80 302.0 204 75.0
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 3.5e-80 302.0 206 74.3
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 4.6e-80 301.6 204 77.0
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 6.0e-80 301.2 205 75.6
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 7.8e-80 300.8 203 74.9
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 7.8e-80 300.8 204 74.0
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 1.0e-79 300.4 201 76.6
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 1.0e-79 300.4 204 75.0
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 1.7e-79 299.7 205 75.6
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 1.7e-79 299.7 204 73.0
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 2.3e-79 299.3 203 75.9
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 2.3e-79 299.3 201 75.1
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 2.3e-79 299.3 204 76.0
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 3.0e-79 298.9 204 74.0
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 3.0e-79 298.9 204 74.0
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 3.9e-79 298.5 204 72.5
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 3.9e-79 298.5 204 75.5
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 3.9e-79 298.5 204 74.5
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 5.1e-79 298.1 204 74.0
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 6.6e-79 297.7 201 76.1
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 6.6e-79 297.7 206 73.3
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 6.6e-79 297.7 202 73.8
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 1.1e-78 297.0 201 76.1
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 1.1e-78 297.0 206 73.8
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 1.5e-78 296.6 201 75.6
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 1.9e-78 296.2 201 75.6
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 1.9e-78 296.2 202 74.3
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.9e-78 296.2 204 72.1
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 2.5e-78 295.8 204 73.0
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 2.5e-78 295.8 201 75.6
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 3.3e-78 295.4 202 75.7
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 3.3e-78 295.4 204 74.5
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 4.3e-78 295.0 202 76.2
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 4.3e-78 295.0 203 72.4
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 5.6e-78 294.7 204 72.1
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 7.3e-78 294.3 204 72.1
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 9.6e-78 293.9 200 74.5
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 9.6e-78 293.9 204 72.5
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 9.6e-78 293.9 204 73.0
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 1.2e-77 293.5 202 75.7
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 1.6e-77 293.1 203 75.4
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 2.1e-77 292.7 204 72.1
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 2.1e-77 292.7 203 72.9
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 2.8e-77 292.4 202 72.8
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 3.6e-77 292.0 206 70.4
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 4.7e-77 291.6 204 74.0
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 6.2e-77 291.2 204 73.0
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 8.1e-77 290.8 201 74.6
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.1e-76 290.4 205 73.7
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 1.1e-76 290.4 204 73.0
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 1.8e-76 289.7 204 73.0
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 6.8e-76 287.7 200 72.5
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 6.8e-76 287.7 207 71.0
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 3.4e-75 285.4 201 72.6
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 5.8e-75 284.6 198 73.7
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 4.2e-73 278.5 204 69.1
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 9.3e-73 277.3 205 72.2
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 2.7e-72 275.8 204 69.1
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 4.6e-72 275.0 203 68.0
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 3.0e-71 272.3 201 67.7
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 3.9e-71 271.9 201 68.2
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.1e-70 270.4 205 68.8
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 1.1e-70 270.4 203 69.0
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 7.3e-70 267.7 202 66.8
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 3.6e-69 265.4 204 66.7
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 6.9e-68 261.2 204 67.2
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 5.8e-67 258.1 204 66.2
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 3.8e-66 255.4 172 73.8
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 3.5e-64 248.8 172 72.1
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 5.1e-63 245.0 204 61.3
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 8.7e-63 244.2 204 59.8
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 1.5e-62 243.4 201 61.7
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 4.8e-61 238.4 172 70.3
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 1.1e-60 237.3 204 63.7
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 3.4e-59 232.3 149 75.8
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.7e-58 229.9 202 58.9
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.4e-57 226.9 138 77.5
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.3e-50 203.8 141 75.9
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 2.2e-50 203.0 201 55.7
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 5.3e-44 181.8 150 60.7
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.2e-40 170.6 189 48.1
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 1.1e-36 157.5 200 44.5
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 3.8e-34 149.1 201 42.3
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 7.4e-30 134.8 138 54.3
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 7.4e-30 134.8 86 72.1
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 4.8e-21 105.5 56 87.5
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 2.9e-18 96.3 59 74.6
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 5.0e-18 95.5 83 59.0
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 7.2e-17 91.7 106 48.1
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 9.4e-17 91.3 69 63.8
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 2.1e-16 90.1 70 68.6
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 4.7e-16 89.0 57 71.9
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 1.0e-15 87.8 137 44.5
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.5e-14 84.0 63 63.5
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 2.6e-14 83.2 52 75.0
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 3.7e-13 79.3 62 64.5
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 4.8e-13 79.0 64 60.9
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 4.1e-12 75.9 53 67.9
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 5.3e-12 75.5 104 43.3
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 4.5e-11 72.4 166 34.3
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 7.7e-11 71.6 47 68.1
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 1.5e-06 57.4 44 61.4
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 2.6e-06 56.6 83 43.4


User provided reference genes

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