Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1076G35 Lonicera japonica HOM05D003068 ORTHO05D003444 1.4e-131 473.0 242 100.0
Lj3C1074T4 Lonicera japonica HOM05D003068 ORTHO05D003444 1.3e-102 376.7 218 85.8
Dinv17596 Davidia involucrata HOM05D003068 ORTHO05D003444 1.0e-70 270.8 280 57.1
CSS0019564 Camellia sinensis var. sinensis HOM05D003068 ORTHO05D003444 1.5e-66 256.9 224 62.5
CSS0012326 Camellia sinensis var. sinensis HOM05D003068 ORTHO05D003444 1.3e-65 253.8 221 63.3
Dinv11705 Davidia involucrata HOM05D003068 ORTHO05D003444 2.2e-65 253.1 280 55.0
Actinidia09620 Actinidia chinensis HOM05D003068 ORTHO05D003444 3.5e-63 245.7 245 56.3
Actinidia39791 Actinidia chinensis HOM05D003068 ORTHO05D003444 1.9e-61 240.0 220 59.5
Actinidia08047 Actinidia chinensis HOM05D003068 ORTHO05D003444 8.2e-60 234.6 220 60.0
Lj6A832T38 Lonicera japonica HOM05D003068 ORTHO05D003444 4.1e-59 232.3 279 52.0
Rhsim12G0023200 Rhododendron simsii HOM05D003068 ORTHO05D003444 2.0e-58 229.9 280 50.7
vmacro01043 Vaccinium macrocarpon HOM05D003068 ORTHO05D003444 7.6e-58 228.0 221 57.5
Rhsim12G0023100 Rhododendron simsii HOM05D003068 ORTHO05D003444 2.5e-56 223.0 273 50.2
Prupe.1G221600 Prunus persica HOM05D003068 ORTHO05D003444 2.1e-55 219.9 280 50.0
RcHm_v2.0_Chr4g0429641 Rosa chinensis HOM05D003068 ORTHO05D003444 3.0e-54 216.1 221 57.0
DCAR_024651 Daucus carota HOM05D003068 ORTHO05D003444 1.5e-53 213.8 225 56.4
Nitab4.5_0004878g0010 Nicotiana tabacum HOM05D003068 ORTHO05D003444 1.6e-52 210.3 226 53.5
Nitab4.5_0001771g0100 Nicotiana tabacum HOM05D003068 ORTHO05D003444 4.8e-52 208.8 226 53.1
FAN17G2511 Fragaria x ananassa HOM05D003068 ORTHO05D003444 1.4e-51 207.2 248 50.0
Hma1.2p1_0275F.1_g110540 Hydrangea macrophylla HOM05D003068 ORTHO05D003444 1.4e-51 207.2 216 55.1
FvH4_4g23270 Fragaria vesca HOM05D003068 ORTHO05D003444 9.0e-51 204.5 248 50.0
FAN12G3359 Fragaria x ananassa HOM05D003068 ORTHO05D003444 9.0e-51 204.5 248 50.0
FAN07G2860 Fragaria x ananassa HOM05D003068 ORTHO05D003444 2.6e-50 203.0 248 49.6
Manes.13G007800 Manihot esculenta HOM05D003068 ORTHO05D003444 4.5e-50 202.2 224 54.0
SalBow2G3600 Salvia bowleyana HOM05D003068 ORTHO05D003444 7.7e-50 201.4 224 51.3
Cc11_g17310 Coffea canephora HOM05D003068 ORTHO05D003444 1.7e-49 200.3 199 55.8
Nitab4.5_0002480g0020 Nicotiana tabacum HOM05D003068 ORTHO05D003444 3.8e-49 199.1 224 52.2
Haze_12457 Corylus avellana HOM05D003068 ORTHO05D003444 5.0e-49 198.7 220 51.8
vmacro16090 Vaccinium macrocarpon HOM05D003068 ORTHO05D003444 5.0e-49 198.7 222 53.6
MD13G1123200 Malus domestica HOM05D003068 ORTHO05D003444 6.5e-49 198.4 247 48.2
Nitab4.5_0000039g0080 Nicotiana tabacum HOM05D003068 ORTHO05D003444 6.5e-49 198.4 224 52.2
Cfa009397 Carpinus fangiana HOM05D003068 ORTHO05D003444 3.2e-48 196.1 219 50.2
MD16G1124000 Malus domestica HOM05D003068 ORTHO05D003444 3.2e-48 196.1 215 52.6
CANSAT01G2060 Cannabis sativa HOM05D003068 ORTHO05D003444 1.6e-47 193.7 223 49.8
Oeu044470.1 Olea europaea HOM05D003068 ORTHO05D003444 1.6e-47 193.7 224 50.0
PGSC0003DMG400010805 Solanum tuberosum HOM05D003068 ORTHO05D003444 2.7e-47 193.0 224 50.9
Manes.12G007400 Manihot esculenta HOM05D003068 ORTHO05D003444 3.6e-47 192.6 224 50.4
QL03p051306 Quercus lobata HOM05D003068 ORTHO05D003444 6.1e-47 191.8 220 50.9
Peaxi162Scf00128g01613 Petunia axillaris HOM05D003068 ORTHO05D003444 1.0e-46 191.0 224 51.3
Migut.K01012 Erythranthe guttata HOM05D003068 ORTHO05D003444 2.0e-45 186.8 222 50.5
Solyc05g015930.4 Solanum lycopersicum HOM05D003068 ORTHO05D003444 2.5e-45 186.4 224 49.6
Sopen05g012000 Solanum pennellii HOM05D003068 ORTHO05D003444 2.5e-45 186.4 224 49.6
Oeu011351.2 Olea europaea HOM05D003068 ORTHO05D003444 4.8e-44 182.2 238 46.2
CiPaw.05G106000 Carya illinoinensis HOM05D003068 ORTHO05D003444 1.8e-43 180.3 219 47.9
CiPaw.06G106100 Carya illinoinensis HOM05D003068 ORTHO05D003444 1.8e-43 180.3 213 50.7
CAN.G31.3 Capsicum annuum HOM05D003068 ORTHO05D003444 5.3e-43 178.7 220 49.1
TAR371G1274 Trochodendron aralioides HOM05D003068 ORTHO05D003444 1.2e-42 177.6 272 40.1
Solyc05g015920.3 Solanum lycopersicum HOM05D003068 ORTHO05D003444 5.9e-42 175.3 222 49.1
Sopen05g012020 Solanum pennellii HOM05D003068 ORTHO05D003444 5.9e-42 175.3 222 48.6
Oeu044469.1 Olea europaea HOM05D003068 ORTHO05D003444 2.9e-41 172.9 223 46.6
TAR629G1943 Trochodendron aralioides HOM05D003068 ORTHO05D003444 1.4e-40 170.6 244 43.4
Ciclev10030493m.g Citrus clementina HOM05D003068 ORTHO05D003444 3.6e-39 166.0 224 44.2
CAN.G75.8 Capsicum annuum HOM05D003068 ORTHO05D003444 2.3e-38 163.3 222 43.7
PSO017G0558 Papaver somniferum HOM05D003068 ORTHO05D003444 2.3e-38 163.3 222 44.6
TWI36G0350 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 5.1e-38 162.2 247 42.9
Eucgr.B03531 Eucalyptus grandis HOM05D003068 ORTHO05D003444 8.8e-38 161.4 210 46.7
PSO478G2322 Papaver somniferum HOM05D003068 ORTHO05D003444 8.8e-38 161.4 222 44.1
MBI07_g02007_MAGBIO Magnolia biondii HOM05D003068 ORTHO05D003444 1.5e-37 160.6 223 43.0
Nn4g22239 Nelumbo nucifera HOM05D003068 ORTHO05D003444 2.6e-37 159.8 197 44.2
Thecc.02G200100 Theobroma cacao HOM05D003068 ORTHO05D003444 3.3e-37 159.5 246 42.3
CANSAT01G1374 Cannabis sativa HOM05D003068 ORTHO05D003444 9.7e-37 157.9 225 44.0
PGR102G3269 Punica granatum HOM05D003068 ORTHO05D003444 3.7e-36 156.0 210 43.8
Ah.02g131010 Amaranthus hybridus HOM05D003068 ORTHO05D003444 6.3e-36 155.2 259 39.8
Sed0000746 Sechium edule HOM05D003068 ORTHO05D003444 1.1e-35 154.5 221 42.5
EL10Ac6g13546 Beta vulgaris HOM05D003068 ORTHO05D003444 1.4e-35 154.1 255 41.6
SGA_v2.0_scaffold228G43258 Striga asiatica HOM05D003068 ORTHO05D003444 1.4e-35 154.1 224 46.4
GSVIVG01033051001 Vitis vinifera HOM05D003068 ORTHO05D003444 7.0e-35 151.8 222 41.9
SGA_v2.0_scaffold46G17427 Striga asiatica HOM05D003068 ORTHO05D003444 1.6e-34 150.6 222 41.9
Duzib248G1470 Durio zibethinus HOM05D003068 ORTHO05D003444 2.0e-34 150.2 216 43.5
ECA233G3893 Erigeron canadensis HOM05D003068 ORTHO05D003444 3.5e-34 149.4 275 42.5
Hund06111 Selenicereus undatus HOM05D003068 ORTHO05D003444 3.5e-34 149.4 229 40.6
ClCG06G001930 Citrullus lanatus HOM05D003068 ORTHO05D003444 4.5e-34 149.1 222 41.9
Aqoxy5G03256 Aquilegia oxysepala HOM05D003068 ORTHO05D003444 2.2e-33 146.7 220 42.3
Sed0008887 Sechium edule HOM05D003068 ORTHO05D003444 5.0e-33 145.6 222 42.3
Nn3g16377 Nelumbo nucifera HOM05D003068 ORTHO05D003444 2.5e-32 143.3 270 36.3
MELO3C022336.2 Cucumis melo HOM05D003068 ORTHO05D003444 2.7e-31 139.8 223 40.4
CsaV3_6G007980 Cucumis sativus L. HOM05D003068 ORTHO05D003444 2.7e-31 139.8 253 37.2
Hund25484 Selenicereus undatus HOM05D003068 ORTHO05D003444 4.7e-31 139.0 243 37.9
TWI18G0019 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 8.8e-30 134.8 218 41.7
unitig_749.g13315 Utricularia gibba HOM05D003068 ORTHO05D003444 1.1e-29 134.4 220 36.4
Duzib251G0076 Durio zibethinus HOM05D003068 ORTHO05D003444 1.7e-28 130.6 216 39.4
Actinidia30621 Actinidia chinensis HOM05D003068 ORTHO05D003444 2.8e-28 129.8 171 50.3
AUR62005661 Chenopodium quinoa HOM05D003068 ORTHO05D003444 2.8e-28 129.8 225 37.3
PSO478G5081 Papaver somniferum HOM05D003068 ORTHO05D003444 2.8e-28 129.8 218 39.4
Sc14g0009170 Simmondsia chinensis HOM05D003068 ORTHO05D003444 2.8e-28 129.8 226 38.5
PSO017G1912 Papaver somniferum HOM05D003068 ORTHO05D003444 6.3e-28 128.6 215 39.5
MBI11_g38271_MAGBIO Magnolia biondii HOM05D003068 ORTHO05D003444 2.4e-27 126.7 247 34.8
AUR62028892 Chenopodium quinoa HOM05D003068 ORTHO05D003444 5.9e-26 122.1 225 36.9
Lsat_1_v5_gn_4_161 Lactuca sativa HOM05D003068 ORTHO05D003444 5.9e-26 122.1 229 39.3
Sc04g0010350 Simmondsia chinensis HOM05D003068 ORTHO05D003444 7.7e-26 121.7 236 36.9
THA.LOC104807415 Tarenaya hassleriana HOM05D003068 ORTHO05D003444 1.7e-25 120.6 226 35.4
TAR374G1567 Trochodendron aralioides HOM05D003068 ORTHO05D003444 1.7e-25 120.6 169 45.6
Sc11g0000320 Simmondsia chinensis HOM05D003068 ORTHO05D003444 1.5e-24 117.5 227 34.4
MBI11_g31939_MAGBIO Magnolia biondii HOM05D003068 ORTHO05D003444 1.6e-23 114.0 247 34.4
Thhalv10006556m.g Eutrema salsugineum HOM05D003068 ORTHO05D003444 2.1e-23 113.6 244 32.4
unitig_26.g10417 Utricularia gibba HOM05D003068 ORTHO05D003444 8.0e-23 111.7 222 32.0
TWI32G0157 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 1.4e-22 110.9 222 34.2
Duzib147G0957 Durio zibethinus HOM05D003068 ORTHO05D003444 3.0e-22 109.8 221 31.7
CARHR027020 Cardamine hirsuta HOM05D003068 ORTHO05D003444 1.2e-21 107.8 236 33.9
QL02p070794 Quercus lobata HOM05D003068 ORTHO05D003444 1.5e-21 107.5 243 31.7
AT1G24300 Arabidopsis thaliana HOM05D003068 ORTHO05D003444 2.6e-21 106.7 237 33.8
COL.COLO4_13296 Corchorus olitorius HOM05D003068 ORTHO05D003444 3.4e-21 106.3 221 32.6
Thecc.04G040800 Theobroma cacao HOM05D003068 ORTHO05D003444 3.4e-21 106.3 215 36.3
Carub.0001s2597 Capsella rubella HOM05D003068 ORTHO05D003444 2.2e-20 103.6 236 32.6
Cpa.g.sc360.6 Carica papaya HOM05D003068 ORTHO05D003444 2.2e-20 103.6 243 32.5
Gorai.006G044200 Gossypium raimondii HOM05D003068 ORTHO05D003444 2.8e-20 103.2 209 33.5
AT1G27430 Arabidopsis thaliana HOM05D003068 ORTHO05D003444 6.3e-20 102.1 240 32.1
CARHR026790 Cardamine hirsuta HOM05D003068 ORTHO05D003444 6.3e-20 102.1 243 31.3
Gohir.D09G038700 Gossypium hirsutum HOM05D003068 ORTHO05D003444 6.3e-20 102.1 209 33.5
Carub.0001s2609 Capsella rubella HOM05D003068 ORTHO05D003444 1.1e-19 101.3 236 32.2
COL.COLO4_13295 Corchorus olitorius HOM05D003068 ORTHO05D003444 1.8e-19 100.5 221 33.0
Ciclev10014024m.g Citrus clementina HOM05D003068 ORTHO05D003444 2.4e-19 100.1 220 32.3
Actinidia34016 Actinidia chinensis HOM05D003068 ORTHO05D003444 7.0e-19 98.6 210 36.7
Duzib264G0464 Durio zibethinus HOM05D003068 ORTHO05D003444 7.0e-19 98.6 221 33.0
AL1G40840 Arabidopsis lyrata HOM05D003068 ORTHO05D003444 9.1e-19 98.2 243 31.7
Gohir.A09G037700 Gossypium hirsutum HOM05D003068 ORTHO05D003444 1.2e-18 97.8 237 30.4
Atru.chr11.2377 Acer truncatum HOM05D003068 ORTHO05D003444 2.7e-18 96.7 89 53.9
AL1G40620 Arabidopsis lyrata HOM05D003068 ORTHO05D003444 7.7e-18 95.1 243 30.9
Sp1g23660 Schrenkiella parvula HOM05D003068 ORTHO05D003444 6.5e-17 92.0 176 35.8
Ca_26730_v3 Cicer arietinum L. HOM05D003068 ORTHO05D003444 1.5e-16 90.9 214 31.8
Sabra16G0209000 Salix brachista HOM05D003068 ORTHO05D003444 1.9e-16 90.5 220 30.0
TPR.G8567 Trifolium pratense HOM05D003068 ORTHO05D003444 1.9e-16 90.5 217 33.2
Cpa.g.sc360.4 Carica papaya HOM05D003068 ORTHO05D003444 2.5e-16 90.1 229 30.1
HanXRQChr17g0568871 Helianthus annuus HOM05D003068 ORTHO05D003444 4.2e-16 89.4 221 34.4
Thhalv10006550m.g Eutrema salsugineum HOM05D003068 ORTHO05D003444 7.2e-16 88.6 243 29.2
Glyma.16G053500 Glycine max HOM05D003068 ORTHO05D003444 7.2e-16 88.6 214 30.4
arahy.Tifrunner.gnm1.ann1.51F4P8 Arachis hypogaea HOM05D003068 ORTHO05D003444 3.6e-15 86.3 234 28.2
Medtr7g027680 Medicago truncatula HOM05D003068 ORTHO05D003444 4.7e-15 85.9 216 31.9
Psat3g160840 Pisum sativum HOM05D003068 ORTHO05D003444 4.7e-15 85.9 213 30.5
HPP92_028597 Vanilla planifolia HOM05D003068 ORTHO05D003444 4.7e-15 85.9 217 31.3
arahy.Tifrunner.gnm1.ann1.V6C9BH Arachis hypogaea HOM05D003068 ORTHO05D003444 6.1e-15 85.5 234 28.2
FAN09G1608 Fragaria x ananassa HOM05D003068 ORTHO05D003444 6.1e-15 85.5 224 30.4
Glyma.19G095700 Glycine max HOM05D003068 ORTHO05D003444 8.0e-15 85.1 240 29.2
Phvul.001G089500 Phaseolus vulgaris HOM05D003068 ORTHO05D003444 2.3e-14 83.6 214 29.4
Gohir.A11G067700 Gossypium hirsutum HOM05D003068 ORTHO05D003444 5.2e-14 82.4 221 30.8
Gorai.007G071800 Gossypium raimondii HOM05D003068 ORTHO05D003444 5.2e-14 82.4 221 30.8
Aqoxy3G01640 Aquilegia oxysepala HOM05D003068 ORTHO05D003444 6.8e-14 82.0 265 32.1
HanXRQChr08g0210011 Helianthus annuus HOM05D003068 ORTHO05D003444 6.8e-14 82.0 256 32.4
FAN02G2301 Fragaria x ananassa HOM05D003068 ORTHO05D003444 2.0e-13 80.5 264 29.5
Gohir.D11G066300 Gossypium hirsutum HOM05D003068 ORTHO05D003444 2.0e-13 80.5 221 30.3
Zm00001eb364080 Zea mays HOM05D003068 ORTHO05D003444 2.6e-13 80.1 242 28.9
Gohir.D11G058700 Gossypium hirsutum HOM05D003068 ORTHO05D003444 4.4e-13 79.3 221 30.3
Zm00001eb364090 Zea mays HOM05D003068 ORTHO05D003444 4.4e-13 79.3 243 29.6
Aa31LG3G14530 Aethionema arabicum HOM05D003068 ORTHO05D003444 3.7e-12 76.3 188 30.3
BraA08t34590Z Brassica rapa HOM05D003068 ORTHO05D003444 3.7e-12 76.3 250 28.4
Gohir.A11G062500 Gossypium hirsutum HOM05D003068 ORTHO05D003444 3.7e-12 76.3 221 29.0
Sp1g23470 Schrenkiella parvula HOM05D006964 ORTHO05D008861 3.7e-12 76.3 182 30.8
Lalb_Chr22g0360251 Lupinus albus HOM05D003068 ORTHO05D003444 9.2e-11 71.6 215 27.0
ATR0582G309 Amborella trichopoda HOM05D003068 ORTHO05D003444 1.2e-10 71.2 196 32.1
Lalb_Chr00c01g0403831 Lupinus albus HOM05D003068 ORTHO05D003444 1.3e-09 67.8 215 28.8
HanXRQChr12g0362261 Helianthus annuus HOM05D003068 ORTHO05D003444 1.7e-09 67.4 160 33.1
Manes.04G088200 Manihot esculenta HOM05D003068 ORTHO05D003444 1.7e-09 67.4 250 28.8
Atru.chr11.2378 Acer truncatum HOM05D003068 ORTHO05D003444 2.9e-09 66.6 81 48.1
A08p26380 Brassica napus HOM05D003068 ORTHO05D003444 2.9e-09 66.6 161 31.1
C03p73700 Brassica napus HOM05D003068 ORTHO05D003444 1.9e-08 63.9 283 27.2
BcaC01g01619 Brassica carinata HOM05D003068 ORTHO05D003444 2.5e-08 63.5 281 26.0
C03p73680 Brassica napus HOM05D003068 ORTHO05D003444 9.5e-08 61.6 275 27.3
BcaB03g12075 Brassica carinata HOM05D003068 ORTHO05D003444 1.6e-07 60.8 283 25.1
BcaB03g12076 Brassica carinata HOM05D003068 ORTHO05D003444 1.6e-07 60.8 287 25.1
BolC3t19659H Brassica oleracea HOM05D003068 ORTHO05D003444 2.8e-07 60.1 283 26.9
Prupe.3G309100 Prunus persica HOM05D003068 ORTHO05D003444 2.8e-07 60.1 153 31.4
A08p26390 Brassica napus HOM05D003068 ORTHO05D003444 1.4e-06 57.8 279 25.4


User provided reference genes

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