Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 0.0e+00 1428.7 712 100.0
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 3.0e-304 1048.1 705 72.6
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 2.2e-299 1031.9 718 71.0
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 7.2e-298 1026.9 689 72.9
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 9.4e-298 1026.5 686 73.3
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 1.6e-297 1025.8 708 71.2
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 2.1e-297 1025.4 708 71.2
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 5.2e-296 1020.8 713 70.8
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 4.4e-295 1017.7 721 71.8
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 7.5e-295 1016.9 689 71.6
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 1.7e-294 1015.8 716 69.7
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 1.1e-293 1013.1 738 68.4
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 1.1e-293 1013.1 691 71.2
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 4.5e-292 1007.7 689 71.7
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 1.0e-291 1006.5 717 69.7
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 2.9e-291 1005.0 718 68.9
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 5.0e-291 1004.2 713 69.6
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 5.2e-288 994.2 714 68.8
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 7.5e-287 990.3 718 69.1
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 1.7e-286 989.2 776 64.0
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 3.7e-286 988.0 718 70.6
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 6.3e-286 987.3 713 68.2
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 1.4e-285 986.1 708 68.9
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 1.3e-283 979.5 723 67.5
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 5.0e-283 977.6 658 71.7
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 7.2e-282 973.8 750 65.5
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 9.5e-282 973.4 711 68.1
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 6.1e-281 970.7 717 67.9
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 6.8e-280 967.2 717 67.5
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 3.4e-279 964.9 690 68.3
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.8e-277 959.1 711 67.2
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 3.5e-276 954.9 694 68.6
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 5.9e-276 954.1 737 64.6
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 1.7e-275 952.6 717 66.7
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 3.8e-275 951.4 725 67.2
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 8.6e-275 950.3 688 68.3
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 1.5e-274 949.5 715 66.0
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 2.8e-273 945.3 715 65.7
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 6.1e-273 944.1 720 65.3
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 3.0e-272 941.8 690 66.8
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 5.2e-272 941.0 689 66.8
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 2.6e-271 938.7 715 65.6
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 7.5e-271 937.2 716 65.5
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 7.5e-271 937.2 715 65.2
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.3e-270 936.4 740 64.5
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 4.9e-270 934.5 671 68.6
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 8.3e-270 933.7 714 65.3
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 1.1e-269 933.3 715 65.3
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 1.4e-269 932.9 715 63.9
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 1.8e-269 932.6 719 64.4
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 9.2e-269 930.2 690 66.8
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 1.2e-268 929.9 709 65.2
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 1.6e-268 929.5 714 65.1
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 2.0e-268 929.1 720 63.8
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 2.0e-268 929.1 716 64.0
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 5.9e-268 927.5 734 64.0
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 7.8e-268 927.2 718 63.5
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 7.8e-268 927.2 690 68.6
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 1.0e-267 926.8 734 64.0
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 1.7e-267 926.0 715 64.5
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 8.6e-267 923.7 720 63.5
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 8.6e-267 923.7 718 63.9
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 1.5e-266 922.9 715 64.2
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 1.5e-266 922.9 720 63.3
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 3.3e-266 921.8 715 63.1
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 3.3e-266 921.8 715 63.6
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 4.3e-266 921.4 752 61.8
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 1.2e-265 919.8 715 64.1
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 6.8e-264 914.1 709 63.0
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 3.4e-263 911.8 715 63.6
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 9.8e-263 910.2 716 64.1
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 4.9e-262 907.9 711 64.4
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 1.9e-261 906.0 711 62.2
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 2.4e-261 905.6 742 62.0
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 1.9e-258 896.0 617 71.8
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 8.1e-257 890.6 720 62.6
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 1.9e-250 869.4 653 65.4
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 4.3e-250 868.2 672 64.6
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 7.6e-247 857.4 1016 48.6
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 5.4e-245 851.3 688 63.2
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 6.6e-243 844.3 713 61.3
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 2.1e-241 839.3 716 60.9
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 2.6e-239 832.4 671 60.4
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 2.9e-238 828.9 694 59.4
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 9.0e-232 807.4 717 59.3
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 5.4e-229 798.1 620 66.5
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 2.1e-228 796.2 538 70.4
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 3.9e-227 792.0 575 68.0
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.8e-224 783.1 503 75.3
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 3.1e-224 782.3 533 74.5
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.4e-221 772.7 512 72.1
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 3.2e-221 772.3 637 62.0
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 6.7e-219 764.6 689 56.5
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 1.4e-205 720.3 580 62.8
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 3.0e-203 712.6 708 53.7
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 1.3e-190 670.6 637 54.6
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 2.2e-182 643.3 658 51.5
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 1.4e-176 624.0 435 69.2
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 1.4e-176 624.0 673 48.1
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 2.6e-154 550.1 393 69.5
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 1.9e-144 517.3 420 59.5
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.4e-136 490.3 374 63.1
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 5.1e-134 482.6 498 48.0
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 8.6e-134 481.9 387 63.0
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 6.4e-121 439.1 393 56.5
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 1.4e-115 421.4 440 49.3
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 5.3e-115 419.5 325 64.9
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 2.9e-105 387.1 274 68.2
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 6.0e-103 379.4 315 59.7
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 4.9e-97 359.8 282 60.6
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.4e-96 358.2 289 64.0
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 5.5e-96 356.3 632 37.5
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 8.2e-92 342.4 354 52.0
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 1.0e-86 325.5 429 43.8
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 1.7e-84 318.2 233 66.5
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.1e-79 301.2 283 55.8
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 1.8e-67 261.5 427 38.4
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 1.8e-67 261.5 662 31.9
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-65 254.2 388 38.7
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 4.5e-58 230.3 547 29.3
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 1.4e-43 182.2 355 37.5
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 2.4e-43 181.4 275 40.0
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.9e-41 174.5 142 62.0
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 8.0e-39 166.4 123 65.0
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 5.2e-38 163.7 111 76.6
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 1.7e-33 148.7 103 71.8
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.9e-32 145.2 220 38.6
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.8e-31 141.4 228 36.8
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.5e-29 135.6 225 36.9
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.1e-26 125.2 135 49.6
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 3.3e-24 117.9 84 65.5
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 2.3e-22 111.7 410 27.1
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 2.2e-20 105.1 74 64.9
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 5.6e-16 90.5 88 47.7
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 1.8e-14 85.5 65 67.7
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 2.4e-14 85.1 161 41.6
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 4.0e-14 84.3 381 24.7
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 5.2e-14 84.0 207 31.4
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 8.9e-14 83.2 47 72.3
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.0e-13 82.0 55 63.6
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.3e-12 79.3 57 57.9
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.9e-12 77.4 131 36.6
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.9e-11 75.5 48 64.6
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.2e-11 74.7 54 59.3
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 3.5e-10 71.2 68 48.5
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 1.9e-08 65.5 44 72.7
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 2.5e-08 65.1 66 56.1


User provided reference genes

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