Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1053G44 Lonicera japonica HOM05D001015 ORTHO05D000881 1.1e-17 92.0 41 100.0
Dinv15293 Davidia involucrata HOM05D001015 ORTHO05D000881 6.5e-10 66.2 34 88.2
Rhsim12G0046600 Rhododendron simsii HOM05D001015 ORTHO05D000881 2.5e-09 64.3 34 85.3
vmacro01180 Vaccinium macrocarpon HOM05D001015 ORTHO05D000881 4.2e-09 63.5 34 85.3
Hund25351 Selenicereus undatus HOM05D001015 ORTHO05D000881 5.5e-09 63.2 34 82.4
Hma1.2p1_0536F.1_g174050 Hydrangea macrophylla HOM05D001015 ORTHO05D000881 7.2e-09 62.8 34 82.4
CSS0038541 Camellia sinensis var. sinensis HOM05D001015 ORTHO05D000881 2.1e-08 61.2 34 79.4
Actinidia13185 Actinidia chinensis HOM05D001015 ORTHO05D000881 2.7e-08 60.8 34 76.5
Lj2g0002781 Lotus japonicus HOM05D001015 ORTHO05D000881 2.7e-08 60.8 34 79.4
Sed0013021 Sechium edule HOM05D001015 ORTHO05D000881 3.6e-08 60.5 34 73.5
Glyma.01G030600 Glycine max HOM05D001015 ORTHO05D000881 4.7e-08 60.1 34 79.4
Glyma.02G034900 Glycine max HOM05D001015 ORTHO05D000881 4.7e-08 60.1 34 79.4
Lj2g0014762 Lotus japonicus HOM05D001015 ORTHO05D000881 4.7e-08 60.1 34 76.5
Ciclev10033038m.g Citrus clementina HOM05D001015 ORTHO05D000881 6.1e-08 59.7 34 79.4
Lalb_Chr16g0382281 Lupinus albus HOM05D001015 ORTHO05D000881 6.1e-08 59.7 34 79.4
Ca_13996_v3 Cicer arietinum L. HOM05D001015 ORTHO05D000881 8.0e-08 59.3 34 79.4
PSO063G1180 Papaver somniferum HOM05D001015 ORTHO05D000881 8.0e-08 59.3 34 79.4
TWI36G0839 Tripterygium wilfordii HOM05D001015 ORTHO05D000881 8.0e-08 59.3 34 79.4
AUR62005381 Chenopodium quinoa HOM05D001015 ORTHO05D000881 1.0e-07 58.9 34 79.4
AUR62014043 Chenopodium quinoa HOM05D001015 ORTHO05D000881 1.0e-07 58.9 34 79.4
ClCG08G018040 Citrullus lanatus HOM05D001015 ORTHO05D000881 1.0e-07 58.9 34 76.5
MELO3C010663.2 Cucumis melo HOM05D001015 ORTHO05D000881 1.0e-07 58.9 34 76.5
CsaV3_2G024610 Cucumis sativus L. HOM05D001015 ORTHO05D000881 1.0e-07 58.9 34 76.5
Glyma.01G030800 Glycine max HOM05D001015 ORTHO05D000881 1.0e-07 58.9 34 76.5
Glyma.02G034800 Glycine max HOM05D001015 ORTHO05D000881 1.0e-07 58.9 34 76.5
Phvul.002G071400 Phaseolus vulgaris HOM05D001015 ORTHO05D000881 1.0e-07 58.9 34 76.5
VMungo1215G0082 Vigna mungo HOM05D001015 ORTHO05D000881 1.0e-07 58.9 34 76.5
VMungo1215G1348 Vigna mungo HOM05D001015 ORTHO05D000881 1.0e-07 58.9 34 76.5
Ah.03g132710 Amaranthus hybridus HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 76.5
CANSAT01G0727 Cannabis sativa HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 76.5
Cpa.g.sc69.41 Carica papaya HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 76.5
Cfa009146 Carpinus fangiana HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 76.5
CiPaw.05G151200 Carya illinoinensis HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 76.5
COL.COLO4_24169 Corchorus olitorius HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 76.5
Haze_12180 Corylus avellana HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 76.5
FAN12G0485 Fragaria x ananassa HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 76.5
FAN17G1866 Fragaria x ananassa HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 76.5
FAN22G0440 Fragaria x ananassa HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 76.5
MD16G1092700 Malus domestica HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 73.5
Manes.13G030200 Manihot esculenta HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 76.5
RcHm_v2.0_Chr4g0443871 Rosa chinensis HOM05D001015 ORTHO05D000881 1.4e-07 58.5 34 76.5
arahy.Tifrunner.gnm1.ann1.25ELLY Arachis hypogaea HOM05D001015 ORTHO05D000881 1.8e-07 58.2 34 76.5
arahy.Tifrunner.gnm1.ann1.TWH3WC Arachis hypogaea HOM05D001015 ORTHO05D000881 1.8e-07 58.2 34 76.5
Duzib268G0009 Durio zibethinus HOM05D001015 ORTHO05D000881 1.8e-07 58.2 34 73.5
FvH4_4g34480 Fragaria vesca HOM05D001015 ORTHO05D000881 1.8e-07 58.2 34 76.5
THA.LOC104819465 Tarenaya hassleriana HOM05D001015 ORTHO05D000881 1.8e-07 58.2 34 70.6
Atru.chr11.2031 Acer truncatum HOM05D001015 ORTHO05D000881 2.3e-07 57.8 34 76.5
Aa31LG7G7640 Aethionema arabicum HOM05D001015 ORTHO05D000881 2.3e-07 57.8 34 70.6
Thhalv10009071m.g Eutrema salsugineum HOM05D001015 ORTHO05D000881 2.3e-07 57.8 34 70.6
Lalb_Chr09g0326371 Lupinus albus HOM05D001015 ORTHO05D000881 2.3e-07 57.8 34 76.5
GSVIVG01013724001 Vitis vinifera HOM05D001015 ORTHO05D000881 2.3e-07 57.8 34 76.5
Zm00001eb362020 Zea mays HOM05D001015 ORTHO05D000881 2.3e-07 57.8 34 73.5
ATR0730G094 Amborella trichopoda HOM05D001015 ORTHO05D000881 3.0e-07 57.4 34 73.5
Aqoxy3G01015 Aquilegia oxysepala HOM05D001015 ORTHO05D000881 3.0e-07 57.4 34 73.5
FAN07G2908 Fragaria x ananassa HOM05D001015 ORTHO05D000881 3.0e-07 57.4 34 73.5
Manes.12G028600 Manihot esculenta HOM05D001015 ORTHO05D000881 3.0e-07 57.4 34 76.5
Nn4g22796 Nelumbo nucifera HOM05D001015 ORTHO05D000881 3.0e-07 57.4 34 73.5
Phvul.002G071300 Phaseolus vulgaris HOM05D001015 ORTHO05D000881 3.0e-07 57.4 34 73.5
Potri.008G189900 Populus trichocarpa HOM05D001015 ORTHO05D000881 3.0e-07 57.4 34 73.5
Potri.010G041000 Populus trichocarpa HOM05D001015 ORTHO05D000881 3.0e-07 57.4 34 73.5
QL03p060254 Quercus lobata HOM05D001015 ORTHO05D000881 3.0e-07 57.4 34 73.5
Sc11g0001170 Simmondsia chinensis HOM05D001015 ORTHO05D000881 3.0e-07 57.4 34 76.5
TAR629G1900 Trochodendron aralioides HOM05D001015 ORTHO05D000881 3.0e-07 57.4 34 73.5
Duzib248G1042 Durio zibethinus HOM05D001015 ORTHO05D000881 4.0e-07 57.0 34 73.5
Duzib251G0185 Durio zibethinus HOM05D001015 ORTHO05D000881 4.0e-07 57.0 34 73.5
Gohir.A03G139700 Gossypium hirsutum HOM05D001015 ORTHO05D000881 4.0e-07 57.0 34 73.5
Gohir.A12G142800 Gossypium hirsutum HOM05D001015 ORTHO05D000881 4.0e-07 57.0 34 73.5
Gohir.D12G147600 Gossypium hirsutum HOM05D001015 ORTHO05D000881 4.0e-07 57.0 34 73.5
Gorai.005G182500 Gossypium raimondii HOM05D001015 ORTHO05D000881 4.0e-07 57.0 34 73.5
Gorai.008G158800 Gossypium raimondii HOM05D001015 ORTHO05D000881 4.0e-07 57.0 34 73.5
Sabra08G0144300 Salix brachista HOM05D001015 ORTHO05D000881 4.0e-07 57.0 34 70.6
Thecc.02G250100 Theobroma cacao HOM05D001015 ORTHO05D000881 4.0e-07 57.0 34 73.5
HPP92_019951 Vanilla planifolia HOM05D001015 ORTHO05D000881 4.0e-07 57.0 34 70.6
HPP92_019962 Vanilla planifolia HOM05D001015 ORTHO05D000881 4.0e-07 57.0 34 70.6
EL10Ac6g13675 Beta vulgaris HOM05D001015 ORTHO05D000881 5.2e-07 56.6 34 76.5
Hund05996 Selenicereus undatus HOM05D001015 ORTHO05D000881 6.7e-07 56.2 34 73.5
Actinidia13505 Actinidia chinensis HOM05D001015 ORTHO05D000881 8.8e-07 55.8 30 76.7
Aqoxy3G02972 Aquilegia oxysepala HOM05D001015 ORTHO05D000881 8.8e-07 55.8 34 70.6
CAN.G507.9 Capsicum annuum HOM05D001015 ORTHO05D000881 8.8e-07 55.8 29 86.2
CDE05G2535 Ceratophyllum demersum HOM05D001015 ORTHO05D000881 8.8e-07 55.8 34 70.6
Lj6C806G10 Lonicera japonica HOM05D001015 ORTHO05D000881 8.8e-07 55.8 29 86.2
MBI10_g11076_MAGBIO Magnolia biondii HOM05D001015 ORTHO05D000881 8.8e-07 55.8 34 70.6
Peaxi162Scf00338g00310 Petunia axillaris HOM05D001015 ORTHO05D000881 8.8e-07 55.8 29 86.2
Solyc05g005510.3 Solanum lycopersicum HOM05D001015 ORTHO05D000881 8.8e-07 55.8 29 86.2
Sopen05g001520 Solanum pennellii HOM05D001015 ORTHO05D000881 8.8e-07 55.8 29 86.2
PGSC0003DMG400030997 Solanum tuberosum HOM05D001015 ORTHO05D000881 8.8e-07 55.8 29 86.2
Sp1g21150 Schrenkiella parvula HOM05D001015 ORTHO05D000881 1.1e-06 55.5 34 61.8
TPR.G21097 Trifolium pratense HOM05D001015 ORTHO05D000881 1.1e-06 55.5 34 76.5
TAR374G1358 Trochodendron aralioides HOM05D001015 ORTHO05D000881 1.1e-06 55.5 34 70.6
A09p41040 Brassica napus HOM05D001015 ORTHO05D000881 1.5e-06 55.1 34 61.8
BraA09t39597Z Brassica rapa HOM05D001015 ORTHO05D000881 1.5e-06 55.1 34 61.8
CSS0012485 Camellia sinensis var. sinensis HOM05D001015 ORTHO05D000881 1.5e-06 55.1 34 70.6
Dinv33494 Davidia involucrata HOM05D001015 ORTHO05D000881 1.5e-06 55.1 34 70.6
Prupe.1G253600 Prunus persica HOM05D001015 ORTHO05D000881 1.5e-06 55.1 34 70.6
AL1G37500 Arabidopsis lyrata HOM05D001015 ORTHO05D000881 2.0e-06 54.7 34 61.8
AT1G23750 Arabidopsis thaliana HOM05D001015 ORTHO05D000881 2.0e-06 54.7 34 61.8
BcaB03g14137 Brassica carinata HOM05D001015 ORTHO05D000881 2.0e-06 54.7 34 61.8
BcaC06g35051 Brassica carinata HOM05D001015 ORTHO05D000881 2.0e-06 54.7 34 61.8
BcaC09g48484 Brassica carinata HOM05D001015 ORTHO05D000881 2.0e-06 54.7 33 72.7
A06p07410 Brassica napus HOM05D001015 ORTHO05D000881 2.0e-06 54.7 33 72.7
C07p20270 Brassica napus HOM05D001015 ORTHO05D000881 2.0e-06 54.7 34 61.8
BolC7t42549H Brassica oleracea HOM05D001015 ORTHO05D000881 2.0e-06 54.7 34 61.8
BraA06t23945Z Brassica rapa HOM05D001015 ORTHO05D000881 2.0e-06 54.7 33 72.7
BraA07t29129Z Brassica rapa HOM05D001015 ORTHO05D000881 2.0e-06 54.7 34 61.8
CARHR010770 Cardamine hirsuta HOM05D001015 ORTHO05D000881 2.0e-06 54.7 33 72.7
CARHR024170 Cardamine hirsuta HOM05D001015 ORTHO05D000881 2.0e-06 54.7 34 61.8
Gohir.D02G162500 Gossypium hirsutum HOM05D001015 ORTHO05D000881 2.0e-06 54.7 34 70.6
Oeu062987.1 Olea europaea HOM05D001015 ORTHO05D000881 2.0e-06 54.7 34 70.6
THA.LOC104823644 Tarenaya hassleriana HOM05D001015 ORTHO05D000881 2.0e-06 54.7 34 70.6
BcaB08g37363 Brassica carinata HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
BcaC05g24859 Brassica carinata HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
BcaC05g24948 Brassica carinata HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
BcaC07g38577 Brassica carinata HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
BcaC07g38614 Brassica carinata HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
A07p13800 Brassica napus HOM05D001015 ORTHO05D000881 2.6e-06 54.3 34 61.8
A08p33870 Brassica napus HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
A09p64960 Brassica napus HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
C05p08910 Brassica napus HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
C08p48730 Brassica napus HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
BolC5t29639H Brassica oleracea HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
BolC8t49018H Brassica oleracea HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
BraA09t41839Z Brassica rapa HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
Carub.0001s1006 Capsella rubella HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
Ca_22720_v3 Cicer arietinum L. HOM05D001015 ORTHO05D000881 2.6e-06 54.3 34 73.5
Thhalv10008819m.g Eutrema salsugineum HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
Medtr8g064590 Medicago truncatula HOM05D001015 ORTHO05D000881 2.6e-06 54.3 34 73.5
Psat4g123880 Pisum sativum HOM05D001015 ORTHO05D000881 2.6e-06 54.3 34 73.5
Rhsim10G0022700 Rhododendron simsii HOM05D001015 ORTHO05D000881 2.6e-06 54.3 34 67.6
Sp1g09270 Schrenkiella parvula HOM05D001015 ORTHO05D000881 2.6e-06 54.3 33 72.7
SEGI_23552 Sequoiadendron giganteum HOM05D001015 ORTHO05D000881 2.6e-06 54.3 34 67.6
vmacro05820 Vaccinium macrocarpon HOM05D004440 ORTHO05D005183 2.6e-06 54.3 34 67.6
Dinv35059 Davidia involucrata HOM05D001015 ORTHO05D000881 3.3e-06 53.9 34 67.6
HanXRQChr12g0383491 Helianthus annuus HOM05D001015 ORTHO05D000881 3.3e-06 53.9 30 73.3
HanXRQChr17g0569831 Helianthus annuus HOM05D001015 ORTHO05D000881 3.3e-06 53.9 30 73.3
RcHm_v2.0_Chr2g0171421 Rosa chinensis HOM05D001015 ORTHO05D000881 3.3e-06 53.9 34 70.6
THA.LOC104822144 Tarenaya hassleriana HOM05D001015 ORTHO05D000881 3.3e-06 53.9 34 64.7
TAR622G1348 Trochodendron aralioides HOM05D001015 ORTHO05D000881 3.3e-06 53.9 34 67.6
Cc07_g02280 Coffea canephora HOM05D001015 ORTHO05D000881 4.4e-06 53.5 34 67.6
Lj7A591T82 Lonicera japonica HOM05D001015 ORTHO05D000881 4.4e-06 53.5 34 70.6
MD13G1092100 Malus domestica HOM05D001015 ORTHO05D000881 4.4e-06 53.5 34 67.6
Nitab4.5_0000203g0080 Nicotiana tabacum HOM05D001015 ORTHO05D000881 4.4e-06 53.5 29 82.8
Nitab4.5_0005523g0010 Nicotiana tabacum HOM05D001015 ORTHO05D000881 4.4e-06 53.5 29 82.8
AL1G21440 Arabidopsis lyrata HOM05D001015 ORTHO05D000881 5.7e-06 53.1 33 72.7
AT1G10590 Arabidopsis thaliana HOM05D001015 ORTHO05D000881 5.7e-06 53.1 33 72.7
Prupe.3G283900 Prunus persica HOM05D001015 ORTHO05D000881 5.7e-06 53.1 34 70.6
Actinidia16932 Actinidia chinensis HOM05D001015 ORTHO05D000881 7.5e-06 52.8 34 64.7
Aa31LG1G4310 Aethionema arabicum HOM05D001015 ORTHO05D000881 7.5e-06 52.8 34 67.6
MSTRG.15511 Avicennia marina HOM05D001015 ORTHO05D000881 7.5e-06 52.8 34 64.7
BcaC07g41811 Brassica carinata HOM05D001015 ORTHO05D000881 7.5e-06 52.8 33 69.7
BolC8t52412H Brassica oleracea HOM05D001015 ORTHO05D000881 7.5e-06 52.8 33 69.7
Carub.0001s2326 Capsella rubella HOM05D001015 ORTHO05D000881 7.5e-06 52.8 34 55.9
DCAR_026541 Daucus carota HOM05D001015 ORTHO05D000881 7.5e-06 52.8 27 85.2
Lsat_1_v5_gn_2_92280 Lactuca sativa HOM05D001015 ORTHO05D000881 7.5e-06 52.8 34 67.6
TPR.G11773 Trifolium pratense HOM05D001015 ORTHO05D000881 7.5e-06 52.8 34 70.6
Lalb_Chr05g0216881 Lupinus albus HOM05D001015 ORTHO05D000881 9.7e-06 52.4 34 67.6
Rhsim08G0055100 Rhododendron simsii HOM05D001015 ORTHO05D000881 9.7e-06 52.4 34 64.7
vmacro18242 Vaccinium macrocarpon HOM05D001015 ORTHO05D000881 9.7e-06 52.4 34 64.7


User provided reference genes

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