Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 3.2e-69 265.0 138 100.0
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 2.3e-59 232.3 131 90.1
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 7.4e-58 227.3 131 87.8
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 1.2e-55 219.9 136 80.9
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 3.5e-55 218.4 136 80.1
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 3.5e-55 218.4 133 83.5
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 4.5e-55 218.0 133 84.2
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 5.9e-55 217.6 132 83.3
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.3e-54 216.5 126 86.5
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.2e-54 215.7 132 82.6
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 3.8e-54 214.9 128 85.2
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 6.5e-54 214.2 128 85.2
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 6.5e-54 214.2 128 83.6
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 6.5e-54 214.2 127 81.9
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 1.5e-53 213.0 132 79.5
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.9e-53 212.6 132 82.6
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 2.5e-53 212.2 133 81.2
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 2.5e-53 212.2 134 79.9
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 5.5e-53 211.1 137 78.1
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 7.2e-53 210.7 132 80.3
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 7.2e-53 210.7 132 80.3
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 9.4e-53 210.3 128 80.5
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.2e-52 209.9 127 82.7
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.6e-52 209.5 135 77.0
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 2.1e-52 209.1 135 77.0
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.7e-52 208.8 132 78.8
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.7e-52 208.8 133 79.7
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 3.6e-52 208.4 127 80.3
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 4.7e-52 208.0 133 78.2
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 4.7e-52 208.0 128 81.2
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 4.7e-52 208.0 133 78.9
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 8.0e-52 207.2 128 79.7
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 8.0e-52 207.2 132 78.0
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.0e-51 206.8 133 78.9
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.0e-51 206.8 133 78.9
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.4e-51 206.5 132 78.0
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.4e-51 206.5 132 78.0
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 2.3e-51 205.7 134 77.6
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.9e-51 204.9 132 78.0
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 5.2e-51 204.5 130 80.8
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 5.2e-51 204.5 128 80.5
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 8.8e-51 203.8 130 80.8
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.1e-50 203.4 128 78.1
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.1e-50 203.4 133 75.9
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.5e-50 203.0 132 76.5
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.5e-50 203.0 128 81.2
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.6e-50 202.2 130 80.0
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 5.7e-50 201.1 129 79.8
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 5.7e-50 201.1 128 79.7
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 7.4e-50 200.7 133 75.2
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 1.3e-49 199.9 128 78.9
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 2.2e-49 199.1 127 78.7
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.8e-49 198.7 125 77.6
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 6.3e-49 197.6 130 77.7
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 6.3e-49 197.6 121 79.3
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 8.2e-49 197.2 130 78.5
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.4e-48 196.4 127 78.7
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.4e-48 196.4 118 80.5
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.4e-48 195.7 128 77.3
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 3.1e-48 195.3 122 77.9
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 4.1e-48 194.9 116 83.6
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 4.1e-48 194.9 132 75.8
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 9.1e-48 193.7 190 58.9
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 9.1e-48 193.7 120 80.8
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-47 193.4 126 77.0
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-47 193.4 126 77.0
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.2e-47 193.4 128 74.2
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 2.0e-47 192.6 126 75.4
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 4.5e-47 191.4 132 71.2
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 5.9e-47 191.0 168 63.1
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 1.7e-46 189.5 128 72.7
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 3.8e-46 188.3 112 82.1
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 7.2e-45 184.1 131 69.5
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 7.2e-45 184.1 131 68.7
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 2.1e-44 182.6 132 67.4
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.0e-44 180.6 119 76.5
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.4e-43 179.9 127 74.8
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-43 179.9 113 79.6
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.8e-43 179.5 124 72.6
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 4.0e-43 178.3 134 74.6
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.5e-42 176.4 188 55.3
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 2.0e-42 176.0 137 65.7
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.4e-42 175.3 129 72.9
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 6.3e-41 171.0 125 68.8
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 9.1e-40 167.2 125 67.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 5.9e-39 164.5 125 66.4
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 1.3e-38 163.3 133 61.7
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.2e-38 162.5 133 60.2
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 1.1e-37 160.2 125 66.4
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.9e-37 159.5 133 59.4
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 7.2e-37 157.5 125 64.8
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.2e-36 156.8 125 64.0
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.6e-36 156.4 126 63.5
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.1e-36 156.0 126 62.7
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.7e-36 154.8 125 64.0
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 8.0e-36 154.1 137 57.7
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.0e-35 153.7 127 60.6
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 5.2e-35 151.4 127 62.2
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 5.2e-35 151.4 125 60.8
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.5e-34 149.8 125 61.6
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 2.0e-34 149.4 124 60.5
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 2.0e-34 149.4 124 60.5
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 2.6e-34 149.1 161 54.7
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 5.7e-34 147.9 120 56.7
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.3e-33 146.7 118 63.6
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 3.7e-33 145.2 127 59.8
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 8.3e-33 144.1 121 62.0
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 2.7e-31 139.0 98 70.4
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 7.7e-31 137.5 119 59.7
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 8.6e-30 134.0 119 58.0
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 7.2e-29 131.0 98 69.4
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 2.1e-28 129.4 88 70.5
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.6e-28 128.6 76 84.2
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 9.8e-26 120.6 125 51.2
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 8.3e-25 117.5 83 72.3
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.8e-24 116.3 121 52.1
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.8e-24 116.3 121 52.1
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.8e-24 116.3 75 73.3
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 2.4e-24 115.9 131 48.9
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.4e-24 115.9 126 50.0
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 3.2e-24 115.5 131 48.9
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 3.2e-24 115.5 131 48.9
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 4.1e-24 115.2 76 72.4
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 9.2e-24 114.0 94 63.8
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.2e-23 113.6 75 76.0
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 2.3e-22 109.4 122 49.2
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 5.0e-22 108.2 122 49.2
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 5.0e-22 108.2 125 48.8
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 8.6e-22 107.5 94 59.6
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.4e-19 100.1 122 48.4
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.8e-19 99.8 57 89.5
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.8e-19 99.8 57 89.5
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.3e-19 99.4 72 66.7
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.2e-18 97.1 128 44.5
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 7.5e-18 94.4 52 90.4
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 9.8e-18 94.0 122 43.4
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.3e-17 93.6 57 84.2
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.4e-16 90.1 63 73.0
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.6e-15 86.7 129 35.7
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.0e-15 84.7 52 80.8
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.1e-13 80.5 41 95.1
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.5e-13 80.1 129 38.8
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 2.5e-13 79.3 119 37.8
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 3.3e-13 79.0 94 48.9
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 2.3e-11 72.8 71 56.3
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 6.8e-11 71.2 87 44.8
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 6.6e-06 54.7 66 43.9


User provided reference genes

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