Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 1.7e-120 436.0 222 100.0
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 1.4e-95 353.2 222 76.6
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 4.6e-94 348.2 221 78.3
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 6.1e-94 347.8 222 75.7
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 1.0e-93 347.1 223 76.2
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 3.9e-93 345.1 223 78.0
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 3.9e-93 345.1 222 77.0
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 3.9e-93 345.1 219 77.2
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 8.8e-93 344.0 222 74.3
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.5e-92 343.2 218 78.0
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 3.3e-92 342.0 219 76.7
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 4.3e-92 341.7 222 74.8
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 4.3e-92 341.7 219 75.8
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 5.7e-92 341.3 219 75.8
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 9.7e-92 340.5 219 75.8
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.3e-91 340.1 222 76.1
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.7e-91 339.7 223 75.8
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.8e-91 339.0 219 74.9
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 2.8e-91 339.0 222 73.9
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 1.8e-90 336.3 222 73.4
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 3.1e-90 335.5 224 76.3
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 5.3e-90 334.7 221 73.3
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 6.9e-90 334.3 220 74.1
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 6.9e-90 334.3 222 73.9
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 2.0e-89 332.8 222 73.9
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 4.5e-89 331.6 223 73.5
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 3.8e-88 328.6 222 72.1
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 8.5e-88 327.4 222 72.5
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 8.5e-88 327.4 221 71.0
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.1e-87 327.0 222 73.0
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.4e-87 326.6 223 72.6
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 7.2e-87 324.3 222 72.5
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 2.7e-86 322.4 221 69.7
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 4.7e-86 321.6 222 70.7
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 6.1e-86 321.2 220 69.1
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 7.9e-86 320.9 222 69.8
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 7.9e-86 320.9 222 69.8
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.0e-85 320.5 231 69.7
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.0e-85 320.5 221 70.1
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 1.4e-85 320.1 221 70.1
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.8e-85 319.7 215 71.6
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 8.8e-85 317.4 221 71.0
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.1e-84 317.0 218 68.8
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.1e-84 317.0 220 67.7
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.5e-84 316.6 222 70.3
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 2.0e-84 316.2 213 71.8
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 5.7e-84 314.7 222 69.4
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 7.4e-84 314.3 222 68.9
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.3e-83 313.5 223 68.2
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.7e-83 313.2 222 69.4
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 4.8e-83 311.6 221 71.0
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.4e-82 310.1 223 68.2
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.8e-82 309.7 221 68.3
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.4e-82 309.3 222 67.6
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 4.1e-82 308.5 223 66.8
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.2e-81 307.0 223 67.7
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.6e-81 306.6 222 67.1
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.6e-81 306.6 260 61.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 2.0e-81 306.2 223 65.9
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 7.7e-81 304.3 223 67.7
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.3e-80 303.5 221 67.0
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 1.3e-80 303.5 223 66.8
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.3e-80 303.5 222 67.6
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 5.0e-80 301.6 222 66.7
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 6.5e-80 301.2 214 69.6
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 3.2e-79 298.9 221 65.2
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 5.5e-79 298.1 241 61.4
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 9.4e-79 297.4 222 64.4
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 9.4e-79 297.4 220 65.5
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.6e-78 296.6 222 64.9
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 8.0e-78 294.3 240 62.9
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 2.3e-77 292.7 251 59.0
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 3.0e-77 292.4 291 53.6
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 3.0e-77 292.4 222 64.0
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 5.2e-77 291.6 251 59.0
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 8.8e-77 290.8 223 62.8
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 7.5e-76 287.7 298 53.7
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.8e-75 285.8 222 61.7
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 3.7e-75 285.4 222 64.0
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 9.1e-74 280.8 303 51.2
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 2.7e-73 279.3 245 58.0
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.5e-73 278.9 219 63.9
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 3.8e-72 275.4 216 63.4
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 8.5e-72 274.2 220 60.0
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.1e-71 273.9 251 56.6
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.2e-71 271.9 223 61.4
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 4.2e-71 271.9 223 61.4
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 5.5e-71 271.6 216 62.0
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.5e-71 271.6 220 59.5
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.2e-70 270.4 219 61.2
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.6e-70 270.0 250 56.8
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 4.7e-70 268.5 222 59.9
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.1e-70 268.1 222 59.0
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 8.0e-70 267.7 224 61.2
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 8.0e-70 267.7 219 60.7
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 8.0e-70 267.7 224 61.2
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 8.0e-70 267.7 224 61.2
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 8.0e-70 267.7 224 61.2
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-69 267.3 224 61.2
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.0e-69 267.3 224 61.2
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.8e-69 266.5 222 59.5
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-69 266.2 224 61.2
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.0e-69 265.4 216 60.6
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.8e-69 264.6 219 59.8
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.2e-68 263.8 223 58.3
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 2.0e-68 263.1 217 59.9
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 2.6e-68 262.7 214 60.7
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 5.7e-68 261.5 217 59.9
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 9.8e-68 260.8 223 58.7
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 9.8e-68 260.8 223 58.3
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.7e-67 260.0 216 59.7
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.8e-67 259.2 231 56.3
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.1e-66 255.4 216 59.7
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.1e-66 255.4 218 59.6
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 2.7e-65 252.7 214 58.9
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 2.9e-64 249.2 195 63.1
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.1e-63 247.3 221 57.5
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 9.5e-63 244.2 200 62.5
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 3.6e-62 242.3 218 56.4
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 8.0e-62 241.1 187 64.2
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 9.8e-60 234.2 157 70.7
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.3e-59 233.8 157 71.3
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.1e-58 230.7 157 69.4
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.4e-58 230.3 221 52.9
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 4.1e-58 228.8 157 70.1
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.1e-54 216.5 217 52.1
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 4.7e-54 215.3 217 53.5
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.2e-52 210.7 218 52.3
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.3e-51 207.2 205 52.7
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 2.2e-51 206.5 205 52.2
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.2e-51 206.5 201 54.2
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.9e-51 206.1 201 53.7
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 4.9e-51 205.3 205 52.2
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.9e-51 205.3 216 51.9
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 6.4e-51 204.9 205 52.7
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-50 204.1 205 52.7
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.0e-48 197.6 223 49.3
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.7e-48 196.8 136 69.9
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.6e-46 190.3 136 69.1
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.0e-45 185.7 195 47.7
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 1.2e-44 184.1 126 74.6
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 2.6e-44 183.0 134 67.9
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 5.8e-44 181.8 227 45.8
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.0e-40 171.0 235 44.3
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.3e-40 169.9 143 61.5
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 2.8e-38 162.9 105 73.3
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 4.7e-38 162.2 127 65.4
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-37 160.2 136 58.1
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 4.0e-37 159.1 129 64.3
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 7.5e-36 154.8 120 66.7
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.7e-35 153.7 142 57.0
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-35 153.3 120 66.7
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 2.3e-32 143.3 234 39.7
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 6.6e-32 141.7 214 38.8
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.1e-31 141.0 89 73.0
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.8e-29 133.7 84 75.0
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.6e-28 129.8 144 48.6
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.4e-28 129.0 77 76.6
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 4.4e-28 129.0 172 43.6
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 5.8e-28 128.6 251 35.1
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.3e-27 127.5 197 39.6
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.4e-26 122.1 105 56.2
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 6.4e-19 98.6 93 55.9
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 7.1e-18 95.1 85 51.8
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 2.1e-17 93.6 84 51.2
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.8e-14 83.2 85 50.6
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.8e-11 72.8 162 31.5
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 9.3e-10 68.2 138 32.6
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 1.0e-08 64.7 186 31.7
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 1.0e-08 64.7 68 54.4
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 1.3e-08 64.3 179 32.4
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.3e-08 63.5 59 54.2
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.0e-08 63.2 182 26.4
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 4.8e-06 55.8 133 33.1
HanXRQChr14g0429031 Helianthus annuus HOM05D001860 ORTHO05D223518 8.1e-06 55.1 33 72.7


User provided reference genes

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