Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 0.0e+00 1791.9 901 100.0
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 0.0e+00 1354.7 916 77.5
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 0.0e+00 1305.0 913 74.8
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 0.0e+00 1278.5 918 73.6
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 0.0e+00 1273.8 915 71.9
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 0.0e+00 1271.9 917 73.2
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 0.0e+00 1267.3 917 72.5
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 0.0e+00 1258.8 935 71.0
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 0.0e+00 1247.3 913 70.8
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 0.0e+00 1245.3 912 71.7
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 0.0e+00 1243.8 905 70.9
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 0.0e+00 1241.9 913 70.9
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 0.0e+00 1240.3 926 70.2
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 0.0e+00 1235.3 939 69.9
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 0.0e+00 1232.2 913 70.8
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 0.0e+00 1231.5 909 70.1
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 0.0e+00 1227.6 915 69.7
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 0.0e+00 1225.7 909 70.0
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 0.0e+00 1224.5 915 69.8
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 0.0e+00 1223.4 915 69.6
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 0.0e+00 1223.4 907 69.8
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 0.0e+00 1221.1 915 69.6
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 0.0e+00 1219.9 908 70.8
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 0.0e+00 1219.5 912 69.7
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 0.0e+00 1216.1 913 69.7
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 0.0e+00 1214.1 917 70.0
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 0.0e+00 1212.6 916 70.6
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 0.0e+00 1210.3 913 68.7
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 0.0e+00 1206.0 907 68.4
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 0.0e+00 1205.7 905 68.6
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 0.0e+00 1202.6 906 68.5
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 0.0e+00 1202.2 940 67.8
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 0.0e+00 1200.7 906 68.3
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1199.9 912 67.9
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1199.9 912 68.2
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 0.0e+00 1199.1 905 69.5
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 0.0e+00 1197.6 911 68.9
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 0.0e+00 1191.8 942 67.5
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 0.0e+00 1188.7 917 69.2
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 0.0e+00 1188.3 912 67.7
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 0.0e+00 1187.6 911 69.0
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 0.0e+00 1186.8 917 68.9
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 0.0e+00 1184.1 919 68.0
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1181.4 910 68.5
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 0.0e+00 1181.4 940 66.8
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 0.0e+00 1181.4 915 68.1
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 0.0e+00 1181.0 911 67.1
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 0.0e+00 1179.5 912 68.2
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 0.0e+00 1179.5 907 67.8
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 0.0e+00 1178.7 901 67.9
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 0.0e+00 1175.2 913 67.0
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 0.0e+00 1172.9 917 68.7
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 0.0e+00 1172.1 913 67.7
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 0.0e+00 1171.8 915 66.4
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 0.0e+00 1170.6 908 68.5
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 0.0e+00 1167.5 910 68.0
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1164.1 905 67.6
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1163.3 905 67.7
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 0.0e+00 1162.5 948 65.8
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 0.0e+00 1162.1 910 67.7
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 0.0e+00 1147.1 898 66.4
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1147.1 905 66.2
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 0.0e+00 1144.8 908 66.3
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 0.0e+00 1141.3 908 66.0
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 0.0e+00 1141.3 1123 57.5
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 0.0e+00 1139.4 908 65.4
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 0.0e+00 1138.3 916 66.0
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 0.0e+00 1136.3 907 66.5
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 0.0e+00 1133.2 908 66.2
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 0.0e+00 1131.7 914 65.5
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 0.0e+00 1131.7 901 66.4
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 0.0e+00 1127.1 914 65.1
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 0.0e+00 1125.5 908 65.3
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 0.0e+00 1125.2 909 65.3
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 0.0e+00 1119.4 962 62.0
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 0.0e+00 1116.3 908 64.3
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 0.0e+00 1112.8 788 74.7
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 0.0e+00 1097.8 914 63.9
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 0.0e+00 1089.7 908 63.8
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 0.0e+00 1087.8 911 63.8
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 0.0e+00 1085.9 901 64.0
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 0.0e+00 1083.6 787 72.2
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 0.0e+00 1080.9 842 67.5
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 0.0e+00 1077.8 908 63.3
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 0.0e+00 1075.8 966 60.7
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 6.2e-312 1074.7 909 63.3
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 5.7e-308 1060.8 721 76.4
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 9.7e-308 1060.1 864 65.4
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 1.1e-306 1056.6 914 62.9
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 3.1e-306 1055.0 914 62.8
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 8.2e-299 1030.4 763 70.9
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 2.9e-296 1021.9 713 74.5
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 1.8e-293 1012.7 889 61.0
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 5.2e-293 1011.1 917 59.2
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 1.3e-291 1006.5 889 60.7
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 3.7e-291 1005.0 914 60.7
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 4.8e-291 1004.6 902 61.5
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 3.1e-290 1001.9 902 61.2
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 2.0e-289 999.2 905 60.9
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.5e-287 993.0 912 57.8
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 7.5e-284 980.7 939 57.9
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 4.9e-283 978.0 696 72.8
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 6.4e-275 951.0 914 57.2
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 3.5e-273 945.3 640 77.2
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 5.1e-264 914.8 684 68.7
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.0e-256 890.6 901 54.3
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 3.3e-247 859.0 907 53.9
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 2.5e-210 736.5 912 49.8
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 1.4e-200 704.1 903 47.7
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 3.3e-191 672.9 961 43.6
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 1.9e-186 657.1 975 40.4
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 1.7e-182 644.0 824 46.8
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 4.8e-182 642.5 854 47.0
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 7.7e-180 635.2 491 68.2
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 4.7e-177 625.9 747 48.3
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 4.1e-165 586.3 596 55.0
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.0e-151 540.8 547 57.6
CDE04G0644 Ceratophyllum demersum HOM05D004340 ORTHO05D006363 2.1e-140 504.2 433 64.0
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 3.0e-139 500.4 420 63.3
Glyma.10G070000 Glycine max HOM05D004340 ORTHO05D006363 2.2e-118 431.0 268 78.0
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.6e-116 424.9 448 50.9
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 1.2e-103 382.1 647 39.7
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 1.1e-101 375.6 295 67.5
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 9.7e-98 362.5 676 35.7
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 6.7e-91 339.7 324 57.1
Oeu050624.1 Olea europaea HOM05D004340 ORTHO05D006363 4.5e-79 300.4 197 76.6
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 3.1e-56 224.6 826 24.2
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 7.7e-55 219.9 187 62.0
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 5.0e-54 217.2 156 69.2
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 5.4e-48 197.2 186 59.7
SHI21659 Sapria himalayana HOM05D004340 ORTHO05D006363 2.2e-41 175.3 141 63.8
Eucgr.L00670 Eucalyptus grandis HOM05D004340 ORTHO05D006363 9.2e-40 169.9 178 56.2
Nn1g04521 Nelumbo nucifera HOM05D004340 ORTHO05D006363 3.5e-39 167.9 107 78.5
CBR_g543 Chara braunii HOM05D004340 ORTHO05D006363 6.6e-38 163.7 364 34.9
Eucgr.L00684 Eucalyptus grandis HOM05D004340 ORTHO05D006363 2.8e-36 158.3 193 48.7
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 2.6e-34 151.8 201 45.3
CBR_g545 Chara braunii HOM05D004340 ORTHO05D006363 6.8e-27 127.1 191 34.6
vmacro05170 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 6.4e-25 120.6 82 75.6
Cfa022061 Carpinus fangiana HOM05D004340 ORTHO05D125423 3.2e-24 118.2 556 21.8
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 1.2e-23 116.3 119 52.9
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 3.9e-22 111.3 102 50.0
MBI05_g36411_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D014919 6.6e-22 110.5 220 34.1
Nn1g04520 Nelumbo nucifera HOM05D004340 ORTHO05D006363 1.6e-20 105.9 69 76.8
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 3.2e-16 91.7 60 70.0
BolC2t12024H Brassica oleracea HOM05D004340 ORTHO05D040691 1.0e-14 86.7 139 42.4
SHI21660 Sapria himalayana HOM05D004340 ORTHO05D006363 1.0e-14 86.7 99 47.5
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 2.5e-13 82.0 71 63.4
RcHm_v2.0_Chr1g0372981 Rosa chinensis HOM05D004340 ORTHO05D013606 2.8e-12 78.6 52 63.5
PSO423G0166 Papaver somniferum HOM05D004340 ORTHO05D006363 6.2e-12 77.4 100 50.0
Lalb_Chr05g0220261 Lupinus albus HOM05D004340 ORTHO05D014919 1.4e-11 76.3 74 47.3
BcaC07g37997 Brassica carinata HOM05D004340 ORTHO05D014919 3.1e-11 75.1 90 41.1
Nn1g04518 Nelumbo nucifera HOM05D004340 ORTHO05D014919 4.0e-11 74.7 69 52.2
BolC8t48379H Brassica oleracea HOM05D004340 ORTHO05D014919 5.3e-11 74.3 138 32.6
C02p59600 Brassica napus HOM05D004340 ORTHO05D040691 1.3e-09 69.7 66 56.1
EL10Ac2g03889 Beta vulgaris HOM05D004340 ORTHO05D014919 8.4e-09 67.0 118 33.9
SHI21661 Sapria himalayana HOM05D004340 ORTHO05D006363 8.4e-09 67.0 71 54.9
SHI21663 Sapria himalayana HOM05D004340 ORTHO05D014919 8.4e-09 67.0 72 43.1
C08p42990 Brassica napus HOM05D004340 ORTHO05D014919 2.4e-08 65.5 139 32.4
RcHm_v2.0_Chr1g0327871 Rosa chinensis HOM05D004340 ORTHO05D006363 5.4e-08 64.3 36 83.3
SEGI_26412 Sequoiadendron giganteum HOM05D004340 ORTHO05D014919 7.1e-08 63.9 91 33.0
BolC8t51851H Brassica oleracea HOM05D004340 ORTHO05D014919 4.6e-07 61.2 145 29.7
Lj1g0006325 Lotus japonicus HOM05D000319 ORTHO05D000903 1.0e-06 60.1 179 25.7
MD13G1068900 Malus domestica HOM05D004340 ORTHO05D006363 1.3e-06 59.7 35 77.1


User provided reference genes

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