Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1033T56 Lonicera japonica HOM05D006796 ORTHO05D008615 1.1e-156 556.6 279 100.0
Actinidia19934 Actinidia chinensis HOM05D006796 ORTHO05D008615 1.6e-104 383.3 283 72.8
Nn4g23271 Nelumbo nucifera HOM05D006796 ORTHO05D008615 4.0e-103 378.6 285 71.9
Manes.05G105900 Manihot esculenta HOM05D006796 ORTHO05D008615 1.3e-101 373.6 289 71.6
CSS0026382 Camellia sinensis var. sinensis HOM05D006796 ORTHO05D008615 3.8e-101 372.1 292 69.9
TAR629G0550 Trochodendron aralioides HOM05D006796 ORTHO05D008615 8.4e-101 370.9 283 68.6
TAR371G0712 Trochodendron aralioides HOM05D006796 ORTHO05D008615 7.1e-100 367.9 291 68.7
FAN07G2185 Fragaria x ananassa HOM05D006796 ORTHO05D008615 2.7e-99 365.9 282 71.3
CiPaw.07G071700 Carya illinoinensis HOM05D006796 ORTHO05D008615 1.0e-98 364.0 294 69.4
Dinv34092 Davidia involucrata HOM05D006796 ORTHO05D008615 1.3e-98 363.6 312 66.7
Cc11_g12630 Coffea canephora HOM05D006796 ORTHO05D008615 3.0e-98 362.5 287 69.0
CAN.G964.30 Capsicum annuum HOM05D006796 ORTHO05D008615 8.7e-98 360.9 284 68.3
FvH4_4g30770 Fragaria vesca HOM05D006796 ORTHO05D008615 1.5e-97 360.1 284 70.1
FAN22G2031 Fragaria x ananassa HOM05D006796 ORTHO05D008615 1.5e-97 360.1 284 70.1
Atru.chr11.1722 Acer truncatum HOM05D006796 ORTHO05D008615 9.6e-97 357.5 284 70.1
Thecc.02G339900 Theobroma cacao HOM05D006796 ORTHO05D008615 9.6e-97 357.5 292 68.2
FAN12G1163 Fragaria x ananassa HOM05D006796 ORTHO05D008615 1.3e-96 357.1 284 69.7
PGSC0003DMG400028345 Solanum tuberosum HOM05D006796 ORTHO05D008615 1.3e-96 357.1 291 66.7
GSVIVG01012496001 Vitis vinifera HOM05D006796 ORTHO05D008615 1.6e-96 356.7 289 69.2
Sopen05g007830 Solanum pennellii HOM05D006796 ORTHO05D008615 2.8e-96 355.9 289 66.8
Haze_11961 Corylus avellana HOM05D006796 ORTHO05D008615 1.1e-95 354.0 302 66.2
Peaxi162Scf00222g00236 Petunia axillaris HOM05D006796 ORTHO05D008615 1.1e-95 354.0 278 70.9
Nitab4.5_0000391g0260 Nicotiana tabacum HOM05D006796 ORTHO05D008615 3.1e-95 352.4 283 68.6
CsaV3_5G022970 Cucumis sativus L. HOM05D006796 ORTHO05D008615 4.0e-95 352.1 283 68.6
Potri.010G164400 Populus trichocarpa HOM05D006796 ORTHO05D008615 4.5e-94 348.6 296 67.2
arahy.Tifrunner.gnm1.ann1.NP20FV Arachis hypogaea HOM05D006796 ORTHO05D008615 5.8e-94 348.2 295 65.1
arahy.Tifrunner.gnm1.ann1.R8NX8D Arachis hypogaea HOM05D006796 ORTHO05D008615 5.8e-94 348.2 295 65.1
Migut.L01249 Erythranthe guttata HOM05D006796 ORTHO05D008615 1.0e-93 347.4 282 66.3
Gorai.012G186400 Gossypium raimondii HOM05D006796 ORTHO05D008615 4.9e-93 345.1 298 64.1
TWI31G0717 Tripterygium wilfordii HOM05D006796 ORTHO05D008615 4.9e-93 345.1 286 68.5
RcHm_v2.0_Chr4g0439161 Rosa chinensis HOM05D006796 ORTHO05D008615 8.4e-93 344.4 285 67.4
ClCG09G022060 Citrullus lanatus HOM05D006796 ORTHO05D008615 1.1e-92 344.0 283 67.8
Duzib268G1785 Durio zibethinus HOM05D006796 ORTHO05D008615 1.1e-92 344.0 294 65.6
Gohir.D04G191000 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.1e-92 344.0 298 63.8
SalBow8G2627 Salvia bowleyana HOM05D006796 ORTHO05D008615 1.4e-92 343.6 281 65.8
Eucgr.B03198 Eucalyptus grandis HOM05D006796 ORTHO05D008615 2.5e-92 342.8 281 68.0
Sabra10G0124800 Salix brachista HOM05D006796 ORTHO05D008615 3.2e-92 342.4 296 65.5
Lj2g0006920 Lotus japonicus HOM05D006796 ORTHO05D008615 5.5e-92 341.7 284 66.2
MSTRG.13431 Avicennia marina HOM05D006796 ORTHO05D008615 9.3e-92 340.9 284 65.1
MELO3C002984.2 Cucumis melo HOM05D006796 ORTHO05D008615 4.6e-91 338.6 321 61.1
Prupe.1G279300 Prunus persica HOM05D006796 ORTHO05D008615 4.6e-91 338.6 293 66.2
VMungo1215G0648 Vigna mungo HOM05D006796 ORTHO05D008615 6.0e-91 338.2 284 65.1
Phvul.002G103200 Phaseolus vulgaris HOM05D006796 ORTHO05D008615 7.9e-91 337.8 284 65.1
Ca_04876_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 1.3e-90 337.0 283 65.0
Glyma.01G052700 Glycine max HOM05D006796 ORTHO05D008615 1.8e-90 336.7 285 64.9
Ciclev10032381m.g Citrus clementina HOM05D006796 ORTHO05D008615 2.3e-90 336.3 298 65.8
Psat2g126440 Pisum sativum HOM05D006796 ORTHO05D008615 3.0e-90 335.9 283 65.4
Glyma.02G111300 Glycine max HOM05D006796 ORTHO05D008615 2.5e-89 332.8 284 64.1
Cpa.g.sc1.63 Carica papaya HOM05D006796 ORTHO05D008615 9.6e-89 330.9 282 66.3
CANSAT64G1871 Cannabis sativa HOM05D006796 ORTHO05D008615 1.3e-88 330.5 289 65.1
Gohir.D04G190901 Gossypium hirsutum HOM05D006796 ORTHO05D008615 8.2e-88 327.8 291 61.9
Lsat_1_v5_gn_4_10660 Lactuca sativa HOM05D006796 ORTHO05D008615 2.4e-87 326.2 298 64.4
TPR.G19931 Trifolium pratense HOM05D006796 ORTHO05D008615 1.5e-86 323.6 283 64.7
Hma1.2p1_0354F.1_g133830 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 2.6e-86 322.8 205 81.5
MD13G1068600 Malus domestica HOM05D006796 ORTHO05D008615 3.4e-86 322.4 289 63.7
MD16G1067400 Malus domestica HOM05D006796 ORTHO05D008615 5.9e-86 321.6 283 66.1
Oeu055099.3 Olea europaea HOM05D006796 ORTHO05D008615 1.7e-85 320.1 349 55.9
MSTRG.2332 Avicennia marina HOM05D006796 ORTHO05D008615 2.2e-85 319.7 236 69.1
PGR102G1583 Punica granatum HOM05D006796 ORTHO05D008615 2.2e-85 319.7 285 63.9
SGA_v2.0_scaffold63G21639 Striga asiatica HOM05D006796 ORTHO05D008615 8.5e-85 317.8 293 62.8
PSO017G7370 Papaver somniferum HOM05D006796 ORTHO05D008615 2.5e-84 316.2 284 61.6
Lalb_Chr10g0098461 Lupinus albus HOM05D006796 ORTHO05D008615 3.2e-84 315.8 289 63.0
Sc11g0002140 Simmondsia chinensis HOM05D006796 ORTHO05D008615 3.2e-84 315.8 277 62.1
THA.LOC104805179 Tarenaya hassleriana HOM05D006796 ORTHO05D008615 7.2e-84 314.7 280 62.5
EL10Ac6g13260 Beta vulgaris HOM05D006796 ORTHO05D008615 9.3e-84 314.3 283 62.5
ECA234G4054 Erigeron canadensis HOM05D006796 ORTHO05D008615 1.2e-83 313.9 208 77.9
QL03p069702 Quercus lobata HOM05D006796 ORTHO05D008615 1.2e-83 313.9 368 52.4
Aqoxy3G00482 Aquilegia oxysepala HOM05D006796 ORTHO05D008615 6.1e-83 311.6 303 57.4
Cfa008932 Carpinus fangiana HOM05D006796 ORTHO05D008615 7.9e-83 311.2 411 48.9
PSO478G1165 Papaver somniferum HOM05D006796 ORTHO05D008615 1.0e-82 310.8 284 61.6
CiPaw.05G129900 Carya illinoinensis HOM05D006796 ORTHO05D008615 6.7e-82 308.1 293 61.8
Hund25209 Selenicereus undatus HOM05D006796 ORTHO05D008615 8.7e-82 307.8 289 60.2
CARHR014360 Cardamine hirsuta HOM05D006796 ORTHO05D008615 4.3e-81 305.4 283 60.8
vmacro01347 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 4.3e-81 305.4 307 58.0
Thhalv10008453m.g Eutrema salsugineum HOM05D006796 ORTHO05D008615 3.7e-80 302.4 284 60.2
AT1G13990 Arabidopsis thaliana HOM05D006796 ORTHO05D008615 1.5e-78 297.0 286 59.4
CDE02G1750 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 7.7e-78 294.7 292 57.5
Aa31LG1G1040 Aethionema arabicum HOM05D006796 ORTHO05D008615 1.7e-77 293.5 325 54.2
AUR62032832 Chenopodium quinoa HOM05D006796 ORTHO05D008615 3.8e-77 292.4 285 59.6
COL.COLO4_27978 Corchorus olitorius HOM05D006796 ORTHO05D008615 2.5e-76 289.7 284 57.7
Carub.0001s1368 Capsella rubella HOM05D006796 ORTHO05D008615 5.5e-76 288.5 283 58.3
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 1.6e-75 287.0 284 58.1
AL1G25830 Arabidopsis lyrata HOM05D006796 ORTHO05D008615 2.7e-75 286.2 286 58.7
C05p11750 Brassica napus HOM05D006796 ORTHO05D008615 4.6e-75 285.4 195 75.9
ATR0564G337 Amborella trichopoda HOM05D006796 ORTHO05D008615 1.0e-74 284.3 198 73.7
BolC5t29921H Brassica oleracea HOM05D006796 ORTHO05D008615 1.4e-74 283.9 296 56.8
BcaC05g25295 Brassica carinata HOM05D006796 ORTHO05D008615 8.8e-74 281.2 280 58.9
HPP92_016903 Vanilla planifolia HOM05D006796 ORTHO05D008615 3.7e-72 275.8 279 56.6
BraA06t24185Z Brassica rapa HOM05D006796 ORTHO05D008615 6.9e-71 271.6 312 52.6
AUR62005838 Chenopodium quinoa HOM05D006796 ORTHO05D008615 5.9e-70 268.5 279 58.1
Zm00001eb402440 Zea mays HOM05D006796 ORTHO05D008615 1.1e-68 264.2 198 66.7
Sed0012383 Sechium edule HOM05D006796 ORTHO05D008615 2.5e-68 263.1 238 62.2
HanXRQChr12g0379181 Helianthus annuus HOM05D006796 ORTHO05D008615 2.1e-67 260.0 243 61.3
Nitab4.5_0004906g0020 Nicotiana tabacum HOM05D006796 ORTHO05D008615 7.9e-67 258.1 150 84.7
Os03g0168200 Oryza sativa ssp. japonica HOM05D006796 ORTHO05D008615 5.2e-66 255.4 191 67.5
Mapoly0042s0065 Marchantia polymorpha HOM05D006796 ORTHO05D008615 1.3e-61 240.7 219 59.4
A06p09990 Brassica napus HOM05D006796 ORTHO05D008615 1.2e-59 234.2 318 47.8
Potri.008G090900 Populus trichocarpa HOM05D006796 ORTHO05D008615 6.5e-53 211.8 285 49.5
arahy.Tifrunner.gnm1.ann1.T4YGUP Arachis hypogaea HOM05D006796 ORTHO05D008615 3.6e-51 206.1 161 70.2
Actinidia31964 Actinidia chinensis HOM05D006796 ORTHO05D008615 1.4e-50 204.1 133 82.0
Gohir.1Z049816 Gossypium hirsutum HOM05D006796 ORTHO05D008615 6.3e-48 195.3 131 76.3
Medtr5g042520 Medicago truncatula HOM05D006796 ORTHO05D008615 8.3e-48 194.9 206 56.3
Rhsim12G0078900 Rhododendron simsii HOM05D006796 ORTHO05D008615 1.8e-47 193.7 401 37.2
CBR_g41640 Chara braunii HOM05D006796 ORTHO05D008615 7.2e-44 181.8 232 47.8
Solyc05g013060.4 Solanum lycopersicum HOM05D006796 ORTHO05D008615 1.6e-43 180.6 182 56.6
SMO271G0176 Selaginella moellendorffii HOM05D006796 ORTHO05D008615 1.0e-42 177.9 207 50.2
Hma1.2p1_0354F.1_g133820 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 1.1e-39 167.9 113 76.1
AagrBONN_evm.TU.Sc2ySwM_344.1473 Anthoceros agrestis HOM05D006796 ORTHO05D008615 9.2e-31 138.3 148 54.7
vmacro01341 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 7.8e-30 135.2 226 42.0
CDE09G0941 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 5.2e-26 122.5 80 71.2
SEGI_14917 Sequoiadendron giganteum HOM05D006796 ORTHO05D008615 6.8e-26 122.1 75 78.7
Oeu021077.1 Olea europaea HOM05D006796 ORTHO05D008615 3.2e-23 113.2 284 36.3
Nn2g13928 Nelumbo nucifera HOM05D006796 ORTHO05D008615 4.6e-22 109.4 98 61.2
PRCOL_00001264 Prasinoderma coloniale HOM05D006796 ORTHO05D008615 1.6e-11 74.3 240 29.2
Gohir.A12G247950 Gossypium hirsutum HOM05D006796 ORTHO05D008615 5.2e-10 69.3 84 45.2
SalBow1G4829 Salvia bowleyana HOM05D006796 ORTHO05D000018 1.2e-09 68.2 71 50.7
Nn2g11199 Nelumbo nucifera HOM05D006796 ORTHO05D008615 2.2e-08 63.9 61 59.0


User provided reference genes

Program Settings