Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1032T68 Lonicera japonica HOM05D006961 ORTHO05D008809 8.3e-99 363.6 172 100.0
DCAR_027451 Daucus carota HOM05D006961 ORTHO05D008809 1.1e-45 187.2 131 70.2
SalBow2G3426 Salvia bowleyana HOM05D006961 ORTHO05D008809 1.1e-45 187.2 121 74.4
ECA234G0986 Erigeron canadensis HOM05D006961 ORTHO05D008809 1.4e-45 186.8 121 75.2
SGA_v2.0_scaffold16G07754 Striga asiatica HOM05D006961 ORTHO05D008809 1.4e-45 186.8 121 73.6
Oeu015341.2 Olea europaea HOM05D006961 ORTHO05D008809 3.1e-45 185.7 135 67.4
Prupe.1G282200 Prunus persica HOM05D006961 ORTHO05D008809 9.0e-45 184.1 120 72.5
MSTRG.7764 Avicennia marina HOM05D006961 ORTHO05D008809 1.2e-44 183.7 121 72.7
MELO3C002920.2 Cucumis melo HOM05D006961 ORTHO05D008809 1.2e-44 183.7 121 72.7
ClCG09G020750 Citrullus lanatus HOM05D006961 ORTHO05D008809 1.5e-44 183.3 121 72.7
Nitab4.5_0000334g0230 Nicotiana tabacum HOM05D006961 ORTHO05D008809 2.0e-44 183.0 121 73.6
Atru.chr11.1688 Acer truncatum HOM05D006961 ORTHO05D008809 2.6e-44 182.6 116 76.7
CsaV3_5G025620 Cucumis sativus L. HOM05D006961 ORTHO05D008809 2.6e-44 182.6 120 72.5
Actinidia19920 Actinidia chinensis HOM05D006961 ORTHO05D008809 5.8e-44 181.4 121 73.6
Haze_11979 Corylus avellana HOM05D006961 ORTHO05D004702 5.8e-44 181.4 120 72.5
Eucgr.G02462 Eucalyptus grandis HOM05D006961 ORTHO05D008809 5.8e-44 181.4 121 73.6
Lsat_1_v5_gn_4_10260 Lactuca sativa HOM05D006961 ORTHO05D008809 7.6e-44 181.0 121 72.7
CiPaw.06G090400 Carya illinoinensis HOM05D006961 ORTHO05D008809 1.3e-43 180.3 121 71.9
Cc11_g12360 Coffea canephora HOM05D006961 ORTHO05D008809 1.3e-43 180.3 120 71.7
RcHm_v2.0_Chr4g0438851 Rosa chinensis HOM05D006961 ORTHO05D008809 1.7e-43 179.9 120 71.7
CAN.G1340.11 Capsicum annuum HOM05D006961 ORTHO05D008809 2.2e-43 179.5 121 71.9
Peaxi162Scf00314g00025 Petunia axillaris HOM05D006961 ORTHO05D008809 2.2e-43 179.5 121 71.1
PGSC0003DMG400028327 Solanum tuberosum HOM05D006961 ORTHO05D008809 3.8e-43 178.7 121 71.9
CANSAT64G0471 Cannabis sativa HOM05D006961 ORTHO05D008809 4.9e-43 178.3 120 71.7
HanXRQChr12g0379241 Helianthus annuus HOM05D006961 ORTHO05D008809 6.4e-43 177.9 121 71.9
TAR622G0866 Trochodendron aralioides HOM05D006961 ORTHO05D008809 6.4e-43 177.9 121 71.9
COL.COLO4_27931 Corchorus olitorius HOM05D006961 ORTHO05D008809 8.4e-43 177.6 123 68.3
Sed0005182 Sechium edule HOM05D006961 ORTHO05D008809 8.4e-43 177.6 123 69.1
unitig_22.g6499 Utricularia gibba HOM05D006961 ORTHO05D008809 8.4e-43 177.6 126 65.9
TWI75G1056 Tripterygium wilfordii HOM05D006961 ORTHO05D008809 1.1e-42 177.2 119 70.6
Ciclev10032810m.g Citrus clementina HOM05D006961 ORTHO05D008809 1.4e-42 176.8 120 72.5
MD16G1064700 Malus domestica HOM05D006961 ORTHO05D008809 1.4e-42 176.8 120 71.7
Duzib268G0330 Durio zibethinus HOM05D006961 ORTHO05D008809 1.9e-42 176.4 123 68.3
Medtr5g043580 Medicago truncatula HOM05D006961 ORTHO05D008809 1.9e-42 176.4 118 70.3
Potri.010G161400 Populus trichocarpa HOM05D006961 ORTHO05D008809 1.9e-42 176.4 121 67.8
Solyc05g012600.3 Solanum lycopersicum HOM05D006961 ORTHO05D008809 1.9e-42 176.4 121 71.1
Sopen05g007430 Solanum pennellii HOM05D006961 ORTHO05D008809 1.9e-42 176.4 121 71.1
Cpa.g.sc1.93 Carica papaya HOM05D006961 ORTHO05D008809 2.4e-42 176.0 120 70.8
PGR119G1669 Punica granatum HOM05D006961 ORTHO05D008809 3.2e-42 175.6 121 70.2
Cfa008905 Carpinus fangiana HOM05D006961 ORTHO05D008809 4.2e-42 175.3 120 70.0
FvH4_4g30480 Fragaria vesca HOM05D006961 ORTHO05D008809 4.2e-42 175.3 120 70.0
Gohir.A05G306100 Gossypium hirsutum HOM05D006961 ORTHO05D008809 4.2e-42 175.3 123 67.5
Gohir.D05G306100 Gossypium hirsutum HOM05D006961 ORTHO05D008809 4.2e-42 175.3 123 67.5
Ca_04910_v3 Cicer arietinum L. HOM05D006961 ORTHO05D008809 5.5e-42 174.9 118 68.6
FAN07G0372 Fragaria x ananassa HOM05D006961 ORTHO05D008809 5.5e-42 174.9 120 69.2
FAN17G2308 Fragaria x ananassa HOM05D006961 ORTHO05D008809 5.5e-42 174.9 120 69.2
vmacro01328 Vaccinium macrocarpon HOM05D006961 ORTHO05D008809 5.5e-42 174.9 121 70.2
FAN22G0366 Fragaria x ananassa HOM05D006961 ORTHO05D008809 7.1e-42 174.5 120 69.2
Lalb_Chr17g0341001 Lupinus albus HOM05D006961 ORTHO05D008809 7.1e-42 174.5 118 68.6
TPR.G24476 Trifolium pratense HOM05D006961 ORTHO05D008809 7.1e-42 174.5 118 68.6
Migut.L01221 Erythranthe guttata HOM05D006961 ORTHO05D008809 9.3e-42 174.1 121 69.4
Dinv34116 Davidia involucrata HOM05D006961 ORTHO05D008809 1.6e-41 173.3 121 70.2
Hma1.2p1_0357F.1_g134450 Hydrangea macrophylla HOM05D006961 ORTHO05D008809 1.6e-41 173.3 120 66.7
GSVIVG01012179001 Vitis vinifera HOM05D006961 ORTHO05D008809 1.6e-41 173.3 118 69.5
arahy.Tifrunner.gnm1.ann1.T2VQ83 Arachis hypogaea HOM05D006961 ORTHO05D008809 3.5e-41 172.2 117 68.4
arahy.Tifrunner.gnm1.ann1.TP0XC6 Arachis hypogaea HOM05D006961 ORTHO05D008809 3.5e-41 172.2 117 68.4
CSS0004568 Camellia sinensis var. sinensis HOM05D006961 ORTHO05D008809 3.5e-41 172.2 127 67.7
Rhsim12G0076500 Rhododendron simsii HOM05D006961 ORTHO05D008809 6.0e-41 171.4 133 65.4
VMungo1215G1627 Vigna mungo HOM05D006961 ORTHO05D008809 1.0e-40 170.6 121 66.1
Carub.0005s0238 Capsella rubella HOM05D006961 ORTHO05D008809 1.3e-40 170.2 122 68.0
Psat2g128160 Pisum sativum HOM05D006961 ORTHO05D008809 3.0e-40 169.1 118 67.8
Ah.03g139190 Amaranthus hybridus HOM05D006961 ORTHO05D008809 3.9e-40 168.7 116 68.1
AL5G13170 Arabidopsis lyrata HOM05D006961 ORTHO05D008809 3.9e-40 168.7 126 65.9
Thecc.02G336300 Theobroma cacao HOM05D006961 ORTHO05D008809 6.7e-40 167.9 127 65.4
Glyma.02G113800 Glycine max HOM05D006961 ORTHO05D008809 8.7e-40 167.5 121 64.5
AT2G03420 Arabidopsis thaliana HOM05D006961 ORTHO05D008809 1.1e-39 167.2 121 66.9
AUR62003136 Chenopodium quinoa HOM05D006961 ORTHO05D008809 1.5e-39 166.8 121 65.3
AUR62007955 Chenopodium quinoa HOM05D006961 ORTHO05D008809 1.5e-39 166.8 121 66.1
Manes.05G107700 Manihot esculenta HOM05D006961 ORTHO05D008809 1.5e-39 166.8 121 63.6
QL03p070935 Quercus lobata HOM05D006961 ORTHO05D008809 1.5e-39 166.8 120 66.7
THA.LOC104824066 Tarenaya hassleriana HOM05D006961 ORTHO05D008809 1.5e-39 166.8 117 68.4
Glyma.01G055400 Glycine max HOM05D006961 ORTHO05D008809 5.6e-39 164.9 121 62.8
CARHR145760 Cardamine hirsuta HOM05D006961 ORTHO05D008809 9.6e-39 164.1 121 66.9
MD13G1065900 Malus domestica HOM05D006961 ORTHO05D008809 9.6e-39 164.1 108 71.3
PSO478G0730 Papaver somniferum HOM05D006961 ORTHO05D008809 9.6e-39 164.1 118 66.1
Aqoxy3G00448 Aquilegia oxysepala HOM05D006961 ORTHO05D008809 1.3e-38 163.7 115 67.0
BcaB07g30670 Brassica carinata HOM05D006961 ORTHO05D008809 1.3e-38 163.7 121 63.6
BcaC04g21488 Brassica carinata HOM05D006961 ORTHO05D008809 1.6e-38 163.3 121 63.6
A09p24430 Brassica napus HOM05D006961 ORTHO05D008809 1.6e-38 163.3 121 63.6
C09p31220 Brassica napus HOM05D006961 ORTHO05D008809 1.6e-38 163.3 121 63.6
BolC9t55978H Brassica oleracea HOM05D006961 ORTHO05D008809 1.6e-38 163.3 121 63.6
BraA09t38036Z Brassica rapa HOM05D006961 ORTHO05D008809 1.6e-38 163.3 121 63.6
MBI16_g15564_MAGBIO Magnolia biondii HOM05D006961 ORTHO05D008809 1.6e-38 163.3 117 63.2
Lj2g0005939 Lotus japonicus HOM05D006961 ORTHO05D008809 2.1e-38 162.9 116 66.4
PSO017G3353 Papaver somniferum HOM05D006961 ORTHO05D008809 3.7e-38 162.2 118 65.3
Hund05862 Selenicereus undatus HOM05D006961 ORTHO05D008809 6.2e-38 161.4 121 63.6
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 8.2e-38 161.0 119 64.7
EL10Ac6g14957 Beta vulgaris HOM05D006961 ORTHO05D008809 8.2e-38 161.0 117 64.1
A02p33440 Brassica napus HOM05D006961 ORTHO05D008809 1.1e-37 160.6 121 62.0
Thhalv10005024m.g Eutrema salsugineum HOM05D006961 ORTHO05D008809 1.4e-37 160.2 121 62.0
ATR0111G017 Amborella trichopoda HOM05D006961 ORTHO05D008809 5.3e-37 158.3 116 62.9
Sp2g14330 Schrenkiella parvula HOM05D006961 ORTHO05D008809 6.9e-37 157.9 121 61.2
Sc04g0007750 Simmondsia chinensis HOM05D006961 ORTHO05D008809 1.2e-36 157.1 112 65.2
Nn3g17372 Nelumbo nucifera HOM05D006961 ORTHO05D008809 2.6e-36 156.0 116 63.8
CDE07G0364 Ceratophyllum demersum HOM05D006961 ORTHO05D008809 1.7e-35 153.3 118 61.0
HPP92_023640 Vanilla planifolia HOM05D006961 ORTHO05D008809 2.5e-34 149.4 114 62.3
Zm00001eb400470 Zea mays HOM05D006961 ORTHO05D008809 5.5e-34 148.3 132 55.3
CDE04G0363 Ceratophyllum demersum HOM05D006961 ORTHO05D008809 3.5e-33 145.6 116 59.5
SEGI_13566 Sequoiadendron giganteum HOM05D006961 ORTHO05D008809 1.9e-31 139.8 116 57.8
HPP92_023624 Vanilla planifolia HOM05D006961 ORTHO05D008809 7.2e-26 121.3 92 63.0
BcaC03g17213 Brassica carinata HOM05D006961 ORTHO05D008809 1.0e-24 117.5 90 64.4
C02p51430 Brassica napus HOM05D006961 ORTHO05D008809 1.0e-24 117.5 90 64.4
BolC2t11231H Brassica oleracea HOM05D006961 ORTHO05D008809 1.0e-24 117.5 90 64.4
Mapoly0047s0086 Marchantia polymorpha HOM05D006961 ORTHO05D008809 1.7e-22 110.2 114 47.4
Zm00001eb176890 Zea mays HOM05D006961 ORTHO05D008809 3.1e-21 105.9 93 54.8
AagrBONN_evm.TU.Sc2ySwM_228.3757 Anthoceros agrestis HOM05D006961 ORTHO05D008809 9.1e-21 104.4 118 46.6
Actinidia31945 Actinidia chinensis HOM05D006961 ORTHO05D008809 3.4e-20 102.4 62 80.6
SalBow2G3119 Salvia bowleyana HOM05D006961 ORTHO05D008809 3.4e-20 102.4 86 62.8
Gorai.009G326100 Gossypium raimondii HOM05D006961 ORTHO05D008809 7.7e-20 101.3 64 75.0
Pp3c5_22460 Physcomitrium patens HOM05D006961 ORTHO05D008809 1.0e-19 100.9 116 43.1
SMO356G0726 Selaginella moellendorffii HOM05D006961 ORTHO05D008809 1.6e-17 93.6 119 42.0
FAN12G0580 Fragaria x ananassa HOM05D006961 ORTHO05D008809 2.6e-15 86.3 46 76.1
CBR_g50745 Chara braunii HOM05D006961 ORTHO05D008809 2.4e-13 79.7 126 32.5
Cre02.g114450 Chlamydomonas reinhardtii HOM05D006961 ORTHO05D008809 8.2e-06 54.7 120 30.8


User provided reference genes

Program Settings