Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 1.2e-47 193.0 107 100.0
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 7.9e-23 110.5 129 58.1
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 1.1e-21 106.7 126 59.5
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.1e-21 106.7 166 45.8
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.3e-21 105.1 96 67.7
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.6e-20 102.8 122 59.0
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 2.1e-20 102.4 120 59.2
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.8e-20 102.1 163 47.2
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.7e-20 101.7 126 57.1
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 4.8e-20 101.3 122 58.2
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 4.8e-20 101.3 120 60.0
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 6.2e-20 100.9 120 58.3
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 1.8e-19 99.4 97 66.0
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 1.8e-19 99.4 120 57.5
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 2.4e-19 99.0 122 55.7
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 3.1e-19 98.6 120 58.3
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 6.9e-19 97.4 118 57.6
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 9.0e-19 97.1 122 54.9
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.2e-18 96.7 119 56.3
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.2e-18 96.7 120 57.5
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.5e-18 96.3 120 57.5
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.5e-18 96.3 120 57.5
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.5e-18 96.3 119 57.1
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.5e-18 96.3 119 57.1
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.5e-18 96.3 123 53.7
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.0e-18 95.9 119 56.3
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.6e-18 95.5 129 44.2
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.6e-18 95.5 121 56.2
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.6e-18 95.5 120 55.8
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.4e-18 95.1 119 56.3
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.4e-18 95.1 121 57.9
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 3.4e-18 95.1 122 54.1
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 3.4e-18 95.1 118 57.6
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 3.4e-18 95.1 118 57.6
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 3.4e-18 95.1 118 57.6
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 4.5e-18 94.7 120 55.8
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.5e-18 94.7 120 56.7
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 5.8e-18 94.4 120 55.8
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 5.8e-18 94.4 121 56.2
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 9.9e-18 93.6 118 56.8
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 9.9e-18 93.6 122 53.3
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 9.9e-18 93.6 120 55.8
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.3e-17 93.2 120 55.8
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 2.2e-17 92.4 118 56.8
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.2e-17 92.4 118 55.1
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-17 92.4 120 56.7
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.2e-17 92.4 122 51.6
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 2.2e-17 92.4 118 55.1
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 2.9e-17 92.0 118 55.9
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 2.9e-17 92.0 119 56.3
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 2.9e-17 92.0 120 54.2
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.9e-17 92.0 118 54.2
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 2.9e-17 92.0 120 55.0
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 2.9e-17 92.0 120 56.7
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 3.8e-17 91.7 118 55.1
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 3.8e-17 91.7 120 54.2
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.9e-17 91.3 120 55.0
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 4.9e-17 91.3 118 55.1
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 6.4e-17 90.9 120 54.2
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 1.1e-16 90.1 120 54.2
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 1.1e-16 90.1 118 55.9
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.1e-16 90.1 118 55.1
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.1e-16 90.1 120 54.2
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.4e-16 89.7 120 55.0
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.4e-16 89.7 120 55.0
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.4e-16 89.7 118 54.2
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 1.9e-16 89.4 51 86.3
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.9e-16 89.4 119 53.8
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 2.4e-16 89.0 121 52.1
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.2e-16 88.6 118 55.1
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 3.2e-16 88.6 120 53.3
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.2e-16 88.6 118 53.4
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.2e-16 88.2 120 53.3
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 5.5e-16 87.8 118 54.2
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 5.5e-16 87.8 118 54.2
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 5.5e-16 87.8 118 53.4
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 5.5e-16 87.8 118 53.4
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 5.5e-16 87.8 118 55.9
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 7.1e-16 87.4 118 53.4
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 7.1e-16 87.4 118 53.4
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 7.1e-16 87.4 118 53.4
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 7.1e-16 87.4 118 53.4
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 9.3e-16 87.0 118 54.2
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 9.3e-16 87.0 118 52.5
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 1.2e-15 86.7 122 50.8
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.6e-15 86.3 120 52.5
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 1.6e-15 86.3 51 84.3
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.6e-15 86.3 118 52.5
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.1e-15 85.9 121 51.2
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 2.1e-15 85.9 118 52.5
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 2.1e-15 85.9 118 53.4
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.5e-15 85.1 72 77.8
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 7.9e-15 84.0 118 51.7
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 7.9e-15 84.0 118 51.7
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 7.9e-15 84.0 118 51.7
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.0e-14 83.6 118 52.5
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.3e-14 83.2 118 51.7
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.3e-14 83.2 46 82.6
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 3.0e-14 82.0 118 50.8
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 3.9e-14 81.6 120 51.7
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 3.9e-14 81.6 121 50.4
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 3.9e-14 81.6 117 51.3
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.9e-14 81.6 118 51.7
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 5.1e-14 81.3 118 50.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.1e-13 80.1 132 46.2
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.1e-13 80.1 118 49.2
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.5e-13 79.7 103 54.4
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.5e-13 79.0 41 87.8
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.4e-13 77.4 121 47.1
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.4e-13 77.4 121 47.1
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 7.4e-13 77.4 121 47.1
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.3e-12 76.6 119 48.7
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.3e-12 76.6 118 48.3
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.6e-12 76.3 121 44.6
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.8e-12 75.5 121 49.6
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.7e-12 75.1 136 36.8
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 3.7e-12 75.1 118 48.3
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.8e-12 74.7 98 56.1
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.8e-12 74.7 98 56.1
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 6.2e-12 74.3 117 48.7
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 6.2e-12 74.3 117 48.7
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 6.2e-12 74.3 117 48.7
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 6.2e-12 74.3 117 48.7
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 6.2e-12 74.3 117 48.7
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 6.2e-12 74.3 117 48.7
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 4.0e-11 71.6 43 74.4
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 4.0e-11 71.6 117 47.9
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 4.0e-11 71.6 117 47.9
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 4.0e-11 71.6 117 47.9
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 4.0e-11 71.6 117 47.9
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 4.0e-11 71.6 117 47.9
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 4.0e-11 71.6 117 47.9
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 5.3e-11 71.2 121 47.9
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 9.0e-11 70.5 118 46.6
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.2e-10 70.1 42 73.8
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.5e-10 69.7 118 46.6
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 1.5e-10 69.7 120 49.2
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.0e-10 69.3 118 46.6
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.0e-10 69.3 42 71.4
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.6e-10 68.9 118 46.6
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 4.5e-10 68.2 122 47.5
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 4.5e-10 68.2 120 46.7
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 2.2e-09 65.9 43 74.4
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 6.5e-09 64.3 41 68.3
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 8.4e-09 63.9 125 43.2
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 3.2e-08 62.0 118 44.9
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.5e-08 61.2 118 44.1
Oeu027875.1 Olea europaea HOM05D003751 ORTHO05D004765 5.5e-08 61.2 66 51.5
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 7.1e-08 60.8 119 43.7
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 7.1e-08 60.8 118 44.1
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 9.3e-08 60.5 41 73.2
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 1.6e-07 59.7 123 44.7
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 2.1e-07 59.3 41 61.0
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.8e-06 56.2 120 42.5


User provided reference genes

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