Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 2.9e-218 761.5 369 100.0
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.9e-148 529.6 367 70.3
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 2.1e-144 516.2 367 67.6
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 2.8e-144 515.8 381 66.7
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 2.4e-143 512.7 367 68.4
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 3.1e-143 512.3 368 68.5
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 4.0e-143 511.9 372 67.7
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 5.3e-143 511.5 367 67.6
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 2.0e-142 509.6 367 67.6
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 2.6e-142 509.2 370 66.8
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.2e-141 506.1 368 67.4
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 2.9e-141 505.8 370 67.0
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 6.4e-141 504.6 368 67.4
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 4.2e-140 501.9 368 66.0
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 4.2e-140 501.9 369 65.6
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 1.2e-139 500.4 368 65.8
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 1.6e-139 500.0 367 64.9
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.6e-139 500.0 368 67.1
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 2.7e-139 499.2 368 65.8
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 3.5e-139 498.8 370 65.7
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 1.8e-138 496.5 368 65.5
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 1.8e-138 496.5 368 66.3
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 8.7e-138 494.2 368 65.8
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 1.1e-137 493.8 370 65.7
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.9e-137 493.0 367 65.7
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 2.5e-137 492.7 367 64.9
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.3e-137 491.9 373 63.5
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.6e-137 491.5 366 65.8
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 5.6e-137 491.5 370 64.6
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 7.4e-137 491.1 373 64.9
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.1e-136 489.6 368 64.1
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 2.8e-136 489.2 367 63.2
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 2.8e-136 489.2 367 64.0
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 6.2e-136 488.0 368 63.9
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 8.2e-136 487.6 369 65.6
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 1.1e-135 487.3 367 64.6
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.1e-135 487.3 373 63.3
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.4e-135 486.9 367 65.1
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.4e-135 486.1 373 63.3
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 6.9e-135 484.6 368 63.9
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 1.5e-134 483.4 355 66.8
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 1.5e-134 483.4 368 64.1
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 2.0e-134 483.0 367 62.4
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 2.6e-134 482.6 368 63.6
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 4.5e-134 481.9 368 64.7
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 7.6e-134 481.1 373 64.3
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 7.6e-134 481.1 368 63.3
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.3e-133 480.3 367 64.3
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 1.3e-133 480.3 368 63.0
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 1.7e-133 479.9 367 63.8
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.2e-133 479.6 367 64.0
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.9e-133 479.2 367 63.5
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 6.5e-133 478.0 370 63.5
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 6.5e-133 478.0 368 62.5
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 8.4e-133 477.6 367 64.9
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.1e-132 477.2 366 63.4
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.9e-132 476.5 371 64.2
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.9e-132 476.5 368 62.8
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 1.9e-132 476.5 368 63.0
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 1.9e-132 476.5 390 60.8
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 3.2e-132 475.7 367 63.2
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.2e-132 475.3 367 64.9
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.5e-132 474.9 367 62.4
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 5.5e-132 474.9 367 62.9
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 2.1e-131 473.0 368 62.8
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 2.1e-131 473.0 390 60.8
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 2.7e-131 472.6 372 62.4
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 7.9e-131 471.1 368 61.4
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 7.9e-131 471.1 369 64.2
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 7.9e-131 471.1 369 63.1
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.3e-130 469.5 368 62.2
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 6.7e-130 468.0 368 61.7
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 8.7e-130 467.6 368 62.2
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.5e-129 466.8 369 62.3
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 1.9e-129 466.5 367 62.9
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 3.3e-129 465.7 367 61.9
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 5.7e-129 464.9 369 61.5
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 7.4e-129 464.5 367 61.9
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 1.6e-128 463.4 368 61.4
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.6e-128 463.4 370 61.9
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 2.8e-128 462.6 366 61.7
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.7e-128 462.2 370 63.5
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 3.7e-128 462.2 370 61.4
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 6.3e-128 461.5 365 61.9
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 1.1e-127 460.7 367 61.9
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 4.1e-127 458.8 368 60.9
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.1e-127 458.8 367 60.5
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 4.1e-127 458.8 367 60.5
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 2.0e-126 456.4 367 61.0
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 4.5e-126 455.3 368 60.6
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 7.7e-126 454.5 368 60.3
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.7e-125 453.4 368 60.6
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 2.2e-125 453.0 369 60.2
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 2.9e-125 452.6 368 60.3
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 2.9e-125 452.6 368 60.3
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 5.0e-125 451.8 368 60.3
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 5.0e-125 451.8 363 61.4
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 6.5e-125 451.4 368 60.3
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 6.5e-125 451.4 367 61.0
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 6.5e-125 451.4 367 61.3
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 6.5e-125 451.4 368 59.8
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 8.5e-125 451.1 368 59.5
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 8.5e-125 451.1 370 59.5
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 1.4e-124 450.3 368 60.3
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.9e-124 449.9 370 61.6
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.2e-124 449.1 363 60.3
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 4.2e-124 448.7 368 60.3
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 9.4e-124 447.6 368 59.2
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.4e-122 443.7 367 60.5
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 2.3e-122 443.0 359 60.7
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 3.0e-122 442.6 369 59.6
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.3e-121 439.1 367 59.4
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.7e-120 436.8 367 58.3
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.2e-120 436.4 372 59.9
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 2.8e-120 436.0 367 58.9
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.1e-119 434.1 344 60.2
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 1.4e-116 423.7 375 57.3
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 3.2e-116 422.5 387 55.8
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.4e-114 417.2 319 64.3
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 5.7e-113 411.8 378 55.0
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 1.3e-112 410.6 369 58.0
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.7e-112 410.2 452 49.3
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.1e-111 407.5 331 62.5
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 3.5e-110 402.5 341 60.4
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 4.5e-110 402.1 381 53.0
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 3.2e-108 396.0 341 58.4
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.7e-107 392.9 367 54.5
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 6.3e-104 381.7 370 52.7
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.8e-103 380.2 369 53.7
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 4.7e-99 365.5 369 50.9
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 8.0e-99 364.8 370 50.0
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 8.8e-98 361.3 355 54.6
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 2.0e-97 360.1 369 53.4
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 2.0e-97 360.1 373 49.3
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 7.0e-95 351.7 367 48.8
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 6.5e-93 345.1 344 52.9
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 4.7e-91 339.0 286 60.1
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 7.7e-86 321.6 277 56.7
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 6.1e-83 312.0 405 41.2
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 8.0e-75 285.0 270 52.2
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 2.3e-74 283.5 251 57.4
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.2e-71 273.1 224 61.2
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 5.0e-69 265.8 226 58.4
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.6e-65 253.4 165 70.9
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 1.0e-61 241.5 151 73.5
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.3e-61 240.4 356 44.4
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 4.3e-60 236.1 144 76.4
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 1.7e-56 224.2 229 50.2
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 8.3e-56 221.9 134 73.1
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 3.6e-43 179.9 145 62.8
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.1e-39 168.3 200 45.0
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 5.3e-34 149.4 80 86.2
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 9.0e-34 148.7 110 62.7
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 1.4e-31 141.4 90 72.2
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 7.9e-30 135.6 69 82.6
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 5.1e-29 132.9 147 46.3
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.5e-28 130.6 176 43.8
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 3.7e-27 126.7 105 58.1
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 4.8e-27 126.3 140 48.6
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 8.1e-27 125.6 90 63.3
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.1e-23 115.2 67 74.6
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 6.0e-22 109.4 74 68.9
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 7.9e-22 109.0 165 38.8
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 1.9e-15 87.8 72 56.9
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 8.2e-11 72.4 42 69.0
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.1e-10 72.0 109 38.5
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 9.0e-10 68.9 51 58.8
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 1.2e-09 68.6 88 44.3
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 4.6e-06 56.6 80 46.2


User provided reference genes

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