Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 3.2e-136 488.4 249 100.0
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 5.8e-61 238.4 234 56.8
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 2.2e-60 236.5 241 55.2
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 2.4e-59 233.0 238 53.4
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 3.2e-59 232.6 238 53.4
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 7.1e-59 231.5 240 54.6
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.0e-57 227.6 236 51.3
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 3.0e-57 226.1 231 55.8
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 5.1e-57 225.3 184 60.9
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 6.7e-57 224.9 248 52.0
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 6.7e-57 224.9 248 50.8
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.1e-56 224.2 152 71.1
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 1.5e-56 223.8 179 62.0
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 2.5e-56 223.0 156 71.2
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 2.5e-56 223.0 184 61.4
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 3.3e-56 222.6 186 61.3
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 7.4e-56 221.5 233 52.8
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 2.8e-55 219.5 210 54.3
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 3.7e-55 219.2 232 51.7
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 3.7e-55 219.2 210 53.8
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 1.8e-54 216.9 245 51.4
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 3.1e-54 216.1 239 50.2
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 5.3e-54 215.3 240 48.3
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 9.0e-54 214.5 183 59.6
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 1.2e-53 214.2 238 53.4
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 1.5e-53 213.8 185 59.5
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.0e-53 213.4 208 60.1
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 2.0e-53 213.4 185 58.9
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 2.0e-53 213.4 210 52.9
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 3.4e-53 212.6 235 50.6
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 3.4e-53 212.6 188 57.4
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 3.4e-53 212.6 257 48.2
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 3.4e-53 212.6 225 51.1
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 4.5e-53 212.2 187 57.8
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 5.8e-53 211.8 188 57.4
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 7.6e-53 211.5 183 57.9
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 1.3e-52 210.7 185 58.4
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 1.3e-52 210.7 209 55.0
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 1.3e-52 210.7 236 50.8
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.7e-52 210.3 183 59.0
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 2.2e-52 209.9 158 63.9
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 2.2e-52 209.9 154 65.6
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 3.8e-52 209.1 241 48.1
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 3.8e-52 209.1 155 65.8
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 3.8e-52 209.1 256 47.3
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 3.8e-52 209.1 185 57.8
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 4.9e-52 208.8 151 66.2
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 4.9e-52 208.8 210 52.9
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 6.4e-52 208.4 158 63.3
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 8.4e-52 208.0 184 60.3
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 1.1e-51 207.6 221 53.8
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 1.1e-51 207.6 251 50.6
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 1.9e-51 206.8 250 49.6
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 3.2e-51 206.1 187 56.1
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 3.2e-51 206.1 210 53.3
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 4.2e-51 205.7 165 64.2
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 5.5e-51 205.3 236 49.2
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 5.5e-51 205.3 185 57.3
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 7.1e-51 204.9 151 64.2
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 1.2e-50 204.1 151 66.9
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 2.1e-50 203.4 157 64.3
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 3.5e-50 202.6 198 53.0
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 4.6e-50 202.2 242 51.2
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 6.0e-50 201.8 246 46.7
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 1.0e-49 201.1 249 46.2
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.8e-49 200.3 186 57.0
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 2.3e-49 199.9 221 52.0
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 3.0e-49 199.5 200 53.5
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 3.9e-49 199.1 192 54.2
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 3.9e-49 199.1 155 65.2
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 3.9e-49 199.1 238 48.3
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 3.9e-49 199.1 152 63.8
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 5.1e-49 198.7 250 46.4
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 6.7e-49 198.4 155 63.2
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 6.7e-49 198.4 245 48.6
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 6.7e-49 198.4 150 62.7
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 1.5e-48 197.2 189 54.0
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 2.5e-48 196.4 161 61.5
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 2.5e-48 196.4 153 62.7
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 2.5e-48 196.4 153 62.1
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 4.3e-48 195.7 223 48.9
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 1.3e-47 194.1 186 57.0
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 2.1e-47 193.4 232 50.0
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 2.1e-47 193.4 229 49.8
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 2.8e-47 193.0 151 60.9
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.8e-47 192.2 286 43.7
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 6.2e-47 191.8 224 49.1
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 2.4e-46 189.9 154 62.3
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 5.3e-46 188.7 156 61.5
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 5.3e-46 188.7 155 59.4
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 6.9e-46 188.3 155 59.4
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 9.0e-46 188.0 157 61.8
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 1.2e-45 187.6 174 56.3
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 1.5e-45 187.2 218 49.5
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 2.6e-45 186.4 153 63.4
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 4.5e-45 185.7 158 63.9
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 4.5e-45 185.7 158 63.9
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 2.2e-44 183.3 185 55.7
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 2.2e-44 183.3 185 55.7
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 2.2e-44 183.3 158 62.7
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 2.9e-44 183.0 156 62.8
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 3.8e-44 182.6 156 62.8
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 3.8e-44 182.6 156 62.8
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 3.8e-44 182.6 157 60.5
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 3.8e-44 182.6 191 51.8
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 3.8e-44 182.6 158 58.9
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 8.4e-44 181.4 156 59.0
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 1.4e-43 180.6 185 55.1
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 1.4e-43 180.6 185 54.1
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 5.5e-43 178.7 196 49.5
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 9.3e-43 177.9 160 58.1
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 1.2e-42 177.6 165 58.8
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 1.6e-42 177.2 160 60.6
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 2.1e-42 176.8 193 53.4
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 2.1e-42 176.8 152 59.9
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 3.5e-42 176.0 158 59.5
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 6.0e-42 175.3 153 59.5
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 1.0e-41 174.5 222 47.3
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 1.8e-41 173.7 157 56.1
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 3.0e-41 172.9 222 47.3
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 8.7e-41 171.4 184 54.3
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 4.3e-40 169.1 229 45.0
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 4.3e-40 169.1 229 45.0
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 5.7e-40 168.7 230 44.8
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 7.4e-40 168.3 226 45.1
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 7.4e-40 168.3 231 44.6
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 6.3e-39 165.2 303 35.0
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 8.2e-39 164.9 171 51.5
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 2.9e-36 156.4 198 53.5
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 7.9e-34 148.3 154 51.3
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 7.9e-34 148.3 154 51.3
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 1.9e-32 143.7 164 47.6
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.7e-28 130.6 122 54.9
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 1.9e-27 127.1 180 41.7
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 6.3e-23 112.1 91 58.2
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.5e-21 107.5 73 68.5
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 2.6e-21 106.7 80 66.2
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 1.1e-19 101.3 77 64.9
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.5e-19 100.1 68 69.1
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 4.2e-19 99.4 68 67.6
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 5.5e-11 72.4 92 42.4
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 4.0e-09 66.2 65 52.3
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 1.5e-08 64.3 68 47.1


User provided reference genes

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